Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc02g0003120 Simmondsia chinensis HOM05D006946 ORTHO05D008634 6.5e-210 733.8 367 100.0
EL10Ac1g00757 Beta vulgaris HOM05D006946 ORTHO05D008634 1.0e-101 374.4 362 57.2
Duzib133G0968 Durio zibethinus HOM05D006946 ORTHO05D008634 6.7e-98 361.7 366 51.9
Thecc.01G395400 Theobroma cacao HOM05D006946 ORTHO05D008634 8.2e-96 354.8 364 51.1
Actinidia32506 Actinidia chinensis HOM05D006946 ORTHO05D008634 4.5e-94 349.0 361 51.8
QL04p030124 Quercus lobata HOM05D006946 ORTHO05D008634 5.0e-93 345.5 356 50.8
GSVIVG01018284001 Vitis vinifera HOM05D006946 ORTHO05D008634 8.5e-93 344.7 366 50.0
COL.COLO4_12403 Corchorus olitorius HOM05D006946 ORTHO05D008634 1.4e-92 344.0 365 49.6
CSS0010598 Camellia sinensis var. sinensis HOM05D006946 ORTHO05D008634 2.1e-91 340.1 365 51.2
AUR62023403 Chenopodium quinoa HOM05D006946 ORTHO05D008634 3.6e-91 339.3 323 56.0
vmacro13499 Vaccinium macrocarpon HOM05D006946 ORTHO05D008634 4.7e-91 339.0 365 50.7
Atru.chr5.122 Acer truncatum HOM05D006946 ORTHO05D008634 6.1e-91 338.6 365 49.0
TAR629G0179 Trochodendron aralioides HOM05D006946 ORTHO05D008634 1.0e-90 337.8 372 50.0
Gorai.008G109100 Gossypium raimondii HOM05D006946 ORTHO05D008634 1.4e-90 337.4 366 49.2
Gohir.D12G100200 Gossypium hirsutum HOM05D006946 ORTHO05D008634 3.0e-90 336.3 298 56.4
Rhsim07G0036200 Rhododendron simsii HOM05D006946 ORTHO05D008634 3.0e-90 336.3 365 50.1
Ah.05g177890 Amaranthus hybridus HOM05D006946 ORTHO05D008634 1.5e-89 334.0 372 51.6
VMungo0331G1797 Vigna mungo HOM05D006946 ORTHO05D008634 2.0e-89 333.6 344 50.6
Glyma.03G110700 Glycine max HOM05D006946 ORTHO05D008634 7.4e-89 331.6 346 49.7
Haze_02851 Corylus avellana HOM05D006946 ORTHO05D008634 9.7e-89 331.3 364 48.6
arahy.Tifrunner.gnm1.ann1.4A1F8H Arachis hypogaea HOM05D006946 ORTHO05D008634 1.3e-88 330.9 365 48.2
Cfa011066 Carpinus fangiana HOM05D006946 ORTHO05D008634 2.2e-88 330.1 368 49.2
RcHm_v2.0_Chr1g0347961 Rosa chinensis HOM05D006946 ORTHO05D008634 4.8e-88 328.9 288 55.9
Phvul.010G049700 Phaseolus vulgaris HOM05D006946 ORTHO05D008634 1.8e-87 327.0 360 47.5
arahy.Tifrunner.gnm1.ann1.GB8G30 Arachis hypogaea HOM05D006946 ORTHO05D008634 3.1e-87 326.2 365 47.4
Ciclev10020918m.g Citrus clementina HOM05D006946 ORTHO05D008634 3.1e-87 326.2 366 50.0
Lj3g0014310 Lotus japonicus HOM05D006946 ORTHO05D008634 9.1e-87 324.7 347 49.6
FAN10G0617 Fragaria x ananassa HOM05D006946 ORTHO05D008634 1.2e-86 324.3 366 48.1
FAN03G2893 Fragaria x ananassa HOM05D006946 ORTHO05D008634 1.6e-86 323.9 369 48.0
FAN06G0853 Fragaria x ananassa HOM05D006946 ORTHO05D008634 1.6e-86 323.9 369 48.2
FvH4_7g10220 Fragaria vesca HOM05D006946 ORTHO05D008634 2.0e-86 323.6 369 48.2
FAN10G1802 Fragaria x ananassa HOM05D006946 ORTHO05D008634 2.6e-86 323.2 366 48.1
HanXRQChr13g0423251 Helianthus annuus HOM05D006946 ORTHO05D008634 4.5e-86 322.4 327 51.7
FAN06G0591 Fragaria x ananassa HOM05D006946 ORTHO05D008634 5.9e-86 322.0 369 48.2
Aqoxy1G01627 Aquilegia oxysepala HOM05D006946 ORTHO05D008634 1.7e-85 320.5 365 48.2
Potri.002G138000 Populus trichocarpa HOM05D006946 ORTHO05D008634 2.2e-85 320.1 368 46.7
Medtr8g006950 Medicago truncatula HOM05D006946 ORTHO05D008634 2.9e-85 319.7 344 46.5
Aqoxy5G04137 Aquilegia oxysepala HOM05D006946 ORTHO05D008634 6.5e-85 318.5 365 47.9
TPR.G33124 Trifolium pratense HOM05D006946 ORTHO05D008634 1.1e-84 317.8 363 44.6
PGR042G0965 Punica granatum HOM05D006946 ORTHO05D008634 1.5e-84 317.4 361 47.9
Cc02_g25140 Coffea canephora HOM05D006946 ORTHO05D008634 2.5e-84 316.6 369 49.9
Gohir.A12G097300 Gossypium hirsutum HOM05D006946 ORTHO05D008634 3.2e-84 316.2 252 61.1
Ca_25802_v3 Cicer arietinum L. HOM05D006946 ORTHO05D008634 7.2e-84 315.1 375 44.8
PSO675G1257 Papaver somniferum HOM05D006946 ORTHO05D008634 1.6e-83 313.9 365 48.5
ECA240G0199 Erigeron canadensis HOM05D006946 ORTHO05D008634 3.6e-83 312.8 345 50.1
CANSAT25G1232 Cannabis sativa HOM05D006946 ORTHO05D008634 8.0e-83 311.6 369 48.5
PSO717G0092 Papaver somniferum HOM05D006946 ORTHO05D008634 6.7e-82 308.5 365 47.9
AUR62013748 Chenopodium quinoa HOM05D006946 ORTHO05D008634 8.8e-82 308.1 369 48.8
THA.LOC104817188 Tarenaya hassleriana HOM05D006946 ORTHO05D008634 1.2e-81 307.8 345 47.8
TWI14G0580 Tripterygium wilfordii HOM05D006946 ORTHO05D008634 1.5e-81 307.4 320 51.2
Hma1.2p1_0072F.1_g038310 Hydrangea macrophylla HOM05D006946 ORTHO05D008634 2.0e-81 307.0 367 46.9
vmacro13524 Vaccinium macrocarpon HOM05D006946 ORTHO05D008634 4.4e-81 305.8 425 43.1
Lsat_1_v5_gn_3_126900 Lactuca sativa HOM05D006946 ORTHO05D008634 9.1e-79 298.1 366 46.2
Migut.B01532 Erythranthe guttata HOM05D006946 ORTHO05D008634 1.2e-78 297.7 369 45.8
Sp5g02920 Schrenkiella parvula HOM05D006946 ORTHO05D008634 1.7e-77 293.9 278 50.7
MSTRG.20688 Avicennia marina HOM05D006946 ORTHO05D008634 5.0e-77 292.4 362 45.9
Lalb_Chr07g0195411 Lupinus albus HOM05D006946 ORTHO05D008634 8.5e-77 291.6 363 44.9
CARHR170620 Cardamine hirsuta HOM05D006946 ORTHO05D008634 2.5e-76 290.0 274 50.7
AT3G60300 Arabidopsis thaliana HOM05D006946 ORTHO05D008634 3.2e-76 289.7 286 49.7
Hund27407 Selenicereus undatus HOM05D006946 ORTHO05D008634 4.7e-75 285.8 565 36.5
CAN.G1473.5 Capsicum annuum HOM05D006946 ORTHO05D008634 8.0e-75 285.0 328 49.4
SalBow5G3575 Salvia bowleyana HOM05D006946 ORTHO05D008634 8.0e-75 285.0 380 44.7
PGSC0003DMG400025996 Solanum tuberosum HOM05D006946 ORTHO05D008634 8.0e-75 285.0 313 48.9
Eucgr.E01546 Eucalyptus grandis HOM05D006946 ORTHO05D008634 1.0e-74 284.6 361 44.9
Psat4g224200 Pisum sativum HOM05D006946 ORTHO05D008634 2.3e-74 283.5 342 45.0
Nitab4.5_0007027g0020 Nicotiana tabacum HOM05D006946 ORTHO05D008634 3.0e-74 283.1 358 45.5
Carub.0005s2704 Capsella rubella HOM05D006946 ORTHO05D008634 5.2e-74 282.3 278 48.9
Solyc01g090220.4 Solanum lycopersicum HOM05D006946 ORTHO05D008634 6.8e-74 282.0 322 48.4
Aa31LG10G14420 Aethionema arabicum HOM05D006946 ORTHO05D008634 8.8e-74 281.6 306 48.0
HPP92_022105 Vanilla planifolia HOM05D006946 ORTHO05D008634 2.6e-73 280.0 321 48.0
Nn1g00836 Nelumbo nucifera HOM05D006946 ORTHO05D008634 4.4e-73 279.3 364 44.5
Thhalv10006060m.g Eutrema salsugineum HOM05D006946 ORTHO05D008634 5.7e-73 278.9 279 49.5
HPP92_022132 Vanilla planifolia HOM05D006946 ORTHO05D008634 1.3e-72 277.7 321 48.0
Sopen01g036020 Solanum pennellii HOM05D006946 ORTHO05D008634 4.8e-72 275.8 369 43.9
ATR0057G021 Amborella trichopoda HOM05D006946 ORTHO05D008634 8.3e-72 275.0 341 45.2
SGA_v2.0_scaffold340G49324 Striga asiatica HOM05D006946 ORTHO05D008634 1.8e-71 273.9 386 43.5
Zm00001eb200010 Zea mays HOM05D006946 ORTHO05D008634 9.1e-71 271.6 368 42.1
CiPaw.14G020200 Carya illinoinensis HOM05D006946 ORTHO05D008634 1.7e-69 267.3 204 60.3
C04p32350 Brassica napus HOM05D006946 ORTHO05D008634 6.1e-67 258.8 277 47.3
AL5G42520 Arabidopsis lyrata HOM05D006946 ORTHO05D008634 3.0e-66 256.5 274 46.7
Sabra02G0106500 Salix brachista HOM05D006946 ORTHO05D008634 5.2e-66 255.8 447 37.8
A04p01710 Brassica napus HOM05D006946 ORTHO05D008634 8.9e-66 255.0 274 46.4
BolC4t24784H Brassica oleracea HOM05D006946 ORTHO05D008634 2.8e-64 250.0 295 44.7
BraA04t15895Z Brassica rapa HOM05D006946 ORTHO05D008634 2.7e-62 243.4 292 43.5
Actinidia18349 Actinidia chinensis HOM05D006946 ORTHO05D008634 1.8e-58 230.7 265 48.7
Nitab4.5_0000920g0010 Nicotiana tabacum HOM05D006946 ORTHO05D008634 4.0e-58 229.6 375 40.3
unitig_750.g28410 Utricularia gibba HOM05D006946 ORTHO05D008634 2.7e-54 216.9 380 40.8
Prupe.2G132200 Prunus persica HOM05D006946 ORTHO05D008634 2.1e-51 207.2 269 44.2
Mapoly0040s0025 Marchantia polymorpha HOM05D006946 ORTHO05D008634 1.1e-50 204.9 358 38.3
Manes.05G055200 Manihot esculenta HOM05D006946 ORTHO05D008634 2.0e-49 200.7 270 42.2
Medtr5g027110 Medicago truncatula HOM05D006946 ORTHO05D008634 2.0e-49 200.7 234 44.4
Dinv43613 Davidia involucrata HOM05D006946 ORTHO05D008634 2.9e-48 196.8 254 44.9
Peaxi162Scf00475g00422 Petunia axillaris HOM05D000253 ORTHO05D000149 1.6e-46 191.0 425 33.2
Lj9A556T13 Lonicera japonica HOM05D006946 ORTHO05D008634 1.7e-45 187.6 262 41.6
Hma1.2p1_0072F.1_g038320 Hydrangea macrophylla HOM05D006946 ORTHO05D008634 3.9e-45 186.4 168 53.6
AagrBONN_evm.TU.Sc2ySwM_117.2461 Anthoceros agrestis HOM05D006946 ORTHO05D008634 2.8e-43 180.3 309 36.9
PSO017G5203 Papaver somniferum HOM05D006946 ORTHO05D008634 8.3e-40 168.7 182 48.4
Potri.014G048000 Populus trichocarpa HOM05D006946 ORTHO05D008634 9.2e-39 165.2 213 43.7
SMO352G0084 Selaginella moellendorffii HOM05D006946 ORTHO05D008634 6.6e-37 159.1 165 48.5
Cpa.g.sc22.64 Carica papaya HOM05D006946 ORTHO05D008634 2.9e-32 143.7 104 65.4
CBR_g38735 Chara braunii HOM05D000019 ORTHO05D000353 2.4e-31 140.6 356 29.8
AUR62044571 Chenopodium quinoa HOM05D006946 ORTHO05D008634 7.1e-31 139.0 378 31.5
MCO13G420 Micromonas commoda HOM05D006946 ORTHO05D008634 7.1e-23 112.5 173 33.5
Cre13.g581801 Chlamydomonas reinhardtii HOM05D006946 ORTHO05D008634 6.2e-19 99.4 234 29.5
MD02G1213400 Malus domestica HOM05D006946 ORTHO05D008634 4.5e-17 93.2 112 44.6
Psat2g026240 Pisum sativum HOM05D006946 ORTHO05D008634 2.4e-15 87.4 103 42.7
Psat1g142640 Pisum sativum HOM05D006946 ORTHO05D008634 1.6e-14 84.7 110 41.8
Psat1g142600 Pisum sativum HOM05D006946 ORTHO05D008634 2.3e-13 80.9 85 45.9
Cpa.g.sc22.65 Carica papaya HOM05D006946 ORTHO05D008634 5.6e-12 76.3 239 27.2
Psat5g300840 Pisum sativum HOM05D006946 ORTHO05D008634 4.0e-10 70.1 79 44.3
Hma1.2p1_0072F.1_g038330 Hydrangea macrophylla HOM05D006946 ORTHO05D008634 1.3e-08 65.1 44 63.6
Os11g0565400 Oryza sativa ssp. japonica HOM05D006946 ORTHO05D008634 2.9e-08 63.9 47 61.7
SEGI_22555 Sequoiadendron giganteum HOM05D006946 ORTHO05D000002 3.8e-08 63.5 119 38.7
Psat6g138360 Pisum sativum HOM05D000346 ORTHO05D008634 8.4e-08 62.4 67 46.3
CiPaw.16G011700 Carya illinoinensis HOM05D001336 ORTHO05D034236 2.4e-07 60.8 50 54.0
QL04p089514 Quercus lobata HOM05D006946 ORTHO05D008634 7.1e-07 59.3 37 70.3
PRCOL_00003801 Prasinoderma coloniale HOM05D013257 ORTHO05D015313 9.3e-07 58.9 223 22.9
HPP92_022101 Vanilla planifolia HOM05D006946 ORTHO05D008634 6.0e-06 56.2 52 46.2
Psat0s4856g0040 Pisum sativum HOM05D006946 ORTHO05D008634 7.9e-06 55.8 56 44.6


User provided reference genes

Program Settings