Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc02g0002980 Simmondsia chinensis HOM05D001638 ORTHO05D005197 7.0e-249 863.6 472 100.0
AUR62023428 Chenopodium quinoa HOM05D001638 ORTHO05D005197 1.4e-127 460.7 424 62.0
Gohir.A13G033800 Gossypium hirsutum HOM05D001638 ORTHO05D005197 1.4e-127 460.7 326 71.2
EL10Ac1g00784 Beta vulgaris HOM05D001638 ORTHO05D005197 4.0e-127 459.1 416 63.0
Ah.03g133920 Amaranthus hybridus HOM05D001638 ORTHO05D005197 6.8e-127 458.4 416 61.5
GSVIVG01018246001 Vitis vinifera HOM05D001638 ORTHO05D005197 4.9e-125 452.2 335 70.1
Hund17077 Selenicereus undatus HOM05D001638 ORTHO05D005197 8.3e-125 451.4 459 60.3
Manes.01G272000 Manihot esculenta HOM05D001638 ORTHO05D005197 1.8e-124 450.3 348 66.7
Rhsim07G0034600 Rhododendron simsii HOM05D001638 ORTHO05D005197 7.0e-124 448.4 330 68.8
Dinv44076 Davidia involucrata HOM05D001638 ORTHO05D005197 2.7e-123 446.4 407 61.4
CSS0022011 Camellia sinensis var. sinensis HOM05D001638 ORTHO05D005197 4.5e-123 445.7 404 62.1
Ciclev10015475m.g Citrus clementina HOM05D001638 ORTHO05D005197 4.5e-123 445.7 409 62.3
Gorai.013G036600 Gossypium raimondii HOM05D001638 ORTHO05D005197 5.9e-123 445.3 319 70.5
SGA_v2.0_scaffold5G02962 Striga asiatica HOM05D001638 ORTHO05D005197 1.0e-122 444.5 334 68.3
Duzib132G0757 Durio zibethinus HOM05D001638 ORTHO05D005197 1.7e-122 443.7 329 69.6
Dinv43635 Davidia involucrata HOM05D001638 ORTHO05D005197 1.1e-121 441.0 331 69.2
vmacro16776 Vaccinium macrocarpon HOM05D001638 ORTHO05D005197 1.1e-121 441.0 403 60.8
Gohir.D13G032100 Gossypium hirsutum HOM05D001638 ORTHO05D005197 7.3e-121 438.3 316 69.9
Thecc.02G084000 Theobroma cacao HOM05D001638 ORTHO05D005197 7.3e-121 438.3 326 68.4
TAR629G0136 Trochodendron aralioides HOM05D001638 ORTHO05D005197 1.2e-120 437.6 418 59.6
Eucgr.F04452 Eucalyptus grandis HOM05D001638 ORTHO05D005197 2.8e-120 436.4 419 58.5
Nn6g33853 Nelumbo nucifera HOM05D001638 ORTHO05D005197 2.0e-118 430.3 334 67.4
Actinidia40391 Actinidia chinensis HOM05D001638 ORTHO05D005197 2.6e-118 429.9 403 59.1
CiPaw.14G021800 Carya illinoinensis HOM05D001638 ORTHO05D005197 4.4e-118 429.1 374 63.6
COL.COLO4_25944 Corchorus olitorius HOM05D001638 ORTHO05D005197 7.5e-118 428.3 320 69.4
Potri.019G085100 Populus trichocarpa HOM05D001638 ORTHO05D005197 7.5e-118 428.3 321 66.7
Prupe.2G127200 Prunus persica HOM05D001638 ORTHO05D005197 9.8e-118 427.9 344 66.0
MSTRG.12501 Avicennia marina HOM05D001638 ORTHO05D005197 1.7e-117 427.2 334 65.0
TAR636G3630 Trochodendron aralioides HOM05D001638 ORTHO05D005197 2.2e-117 426.8 325 69.5
HanXRQChr14g0428901 Helianthus annuus HOM05D001638 ORTHO05D005197 2.9e-117 426.4 330 67.3
Cfa011091 Carpinus fangiana HOM05D001638 ORTHO05D005197 1.1e-116 424.5 332 66.3
arahy.Tifrunner.gnm1.ann1.9JI82G Arachis hypogaea HOM05D001638 ORTHO05D005197 1.9e-116 423.7 331 66.8
MD02G1217000 Malus domestica HOM05D001638 ORTHO05D005197 3.2e-116 422.9 338 66.3
arahy.Tifrunner.gnm1.ann1.MQ0E05 Arachis hypogaea HOM05D001638 ORTHO05D005197 4.1e-116 422.5 331 66.8
Migut.N01781 Erythranthe guttata HOM05D001638 ORTHO05D005197 5.4e-116 422.2 336 63.7
CANSAT56G0649 Cannabis sativa HOM05D001638 ORTHO05D005197 7.8e-115 418.3 324 65.1
DCAR_023354 Daucus carota HOM05D001638 ORTHO05D005197 3.0e-114 416.4 348 62.9
MBI04_g36329_MAGBIO Magnolia biondii HOM05D001638 ORTHO05D005197 1.1e-113 414.5 427 55.0
Ca_04112_v3 Cicer arietinum L. HOM05D001638 ORTHO05D005197 9.5e-113 411.4 332 64.8
TWI23G0567 Tripterygium wilfordii HOM05D001638 ORTHO05D005197 1.2e-112 411.0 331 64.0
Medtr5g064850 Medicago truncatula HOM05D001638 ORTHO05D005197 6.2e-112 408.7 334 63.5
Lj9C558G6 Lonicera japonica HOM05D001638 ORTHO05D001875 1.1e-111 407.9 357 59.9
HanXRQChr01g0007441 Helianthus annuus HOM05D001638 ORTHO05D005197 1.4e-111 407.5 400 57.5
Cc02_g24880 Coffea canephora HOM05D001638 ORTHO05D005197 1.8e-111 407.1 417 55.2
Glyma.18G253900 Glycine max HOM05D001638 ORTHO05D005197 2.3e-111 406.8 330 65.2
Psat0s3614g0040 Pisum sativum HOM05D001638 ORTHO05D005197 3.1e-111 406.4 409 57.5
RcHm_v2.0_Chr1g0346971 Rosa chinensis HOM05D001638 ORTHO05D005197 6.8e-111 405.2 339 63.1
QL04p031108 Quercus lobata HOM05D001638 ORTHO05D005197 2.0e-110 403.7 404 56.9
PGR031G2794 Punica granatum HOM05D001638 ORTHO05D005197 3.4e-110 402.9 328 62.8
Glyma.09G089400 Glycine max HOM05D001638 ORTHO05D005197 9.8e-110 401.4 325 64.3
Medtr7g007890 Medicago truncatula HOM05D001638 ORTHO05D005197 1.3e-109 401.0 397 59.2
MELO3C005976.2 Cucumis melo HOM05D001638 ORTHO05D005197 1.7e-109 400.6 407 57.0
LjContig00564g0006049 Lotus japonicus HOM05D001638 ORTHO05D005197 3.7e-109 399.4 362 59.7
Phvul.008G045000 Phaseolus vulgaris HOM05D001638 ORTHO05D005197 6.4e-109 398.7 383 58.0
Sed0004454 Sechium edule HOM05D001638 ORTHO05D005197 1.1e-108 397.9 409 54.8
unitig_37.g13004 Utricularia gibba HOM05D000186 ORTHO05D001124 1.9e-108 397.1 382 57.1
FAN10G1788 Fragaria x ananassa HOM05D001638 ORTHO05D005197 2.4e-108 396.7 338 61.5
VMungo1383G3402 Vigna mungo HOM05D001638 ORTHO05D005197 2.4e-108 396.7 410 55.9
Lalb_Chr19g0127051 Lupinus albus HOM05D001638 ORTHO05D005197 7.0e-108 395.2 315 64.4
FvH4_7g09810 Fragaria vesca HOM05D001638 ORTHO05D005197 1.6e-107 394.0 338 61.5
Aqoxy7G00848 Aquilegia oxysepala HOM05D001638 ORTHO05D005197 2.1e-107 393.7 342 61.4
Lsat_1_v5_gn_4_15080 Lactuca sativa HOM05D001638 ORTHO05D005197 6.0e-107 392.1 438 53.7
Sabra19G0096200 Salix brachista HOM05D001638 ORTHO05D005197 1.0e-106 391.3 371 56.9
Sp2g24540 Schrenkiella parvula HOM05D001638 ORTHO05D005197 2.3e-106 390.2 326 61.7
BraA03t13813Z Brassica rapa HOM05D001638 ORTHO05D005197 8.6e-106 388.3 331 61.6
FAN01G1872 Fragaria x ananassa HOM05D001638 ORTHO05D005197 8.6e-106 388.3 332 61.1
ClCG05G000380 Citrullus lanatus HOM05D001638 ORTHO05D005197 1.1e-105 387.9 417 55.6
Thhalv10004255m.g Eutrema salsugineum HOM05D001638 ORTHO05D005197 1.1e-105 387.9 330 60.6
C07p44980 Brassica napus HOM05D001638 ORTHO05D005197 1.5e-105 387.5 327 61.8
A09p07280 Brassica napus HOM05D001638 ORTHO05D005197 4.3e-105 386.0 327 60.9
PSO541G3735 Papaver somniferum HOM05D001638 ORTHO05D005197 4.3e-105 386.0 312 62.8
CsaV3_3G007540 Cucumis sativus L. HOM05D001638 ORTHO05D005197 5.6e-105 385.6 407 55.5
PSO170G6800 Papaver somniferum HOM05D001638 ORTHO05D005197 2.8e-104 383.3 301 65.1
BcaB04g19906 Brassica carinata HOM05D001638 ORTHO05D005197 3.6e-104 382.9 335 59.7
BcaC04g23457 Brassica carinata HOM05D001638 ORTHO05D005197 3.6e-104 382.9 323 60.4
AT5G61330 Arabidopsis thaliana HOM05D001638 ORTHO05D005197 6.2e-104 382.1 328 59.5
BolC7t45021H Brassica oleracea HOM05D001638 ORTHO05D005197 8.1e-104 381.7 323 60.7
FAN10G2339 Fragaria x ananassa HOM05D001638 ORTHO05D005197 1.1e-103 381.3 411 54.3
AL8G37990 Arabidopsis lyrata HOM05D001638 ORTHO05D005197 1.8e-103 380.6 326 59.5
Carub.0008s2200 Capsella rubella HOM05D001638 ORTHO05D005197 2.3e-103 380.2 331 58.6
Os01g0526200 Oryza sativa ssp. japonica HOM05D001638 ORTHO05D005197 4.0e-103 379.4 330 58.2
C09p08140 Brassica napus HOM05D001638 ORTHO05D005197 6.8e-103 378.6 324 60.8
BolC9t53726H Brassica oleracea HOM05D001638 ORTHO05D005197 6.8e-103 378.6 324 60.8
DCAR_029773 Daucus carota HOM05D001638 ORTHO05D005197 6.8e-103 378.6 284 67.3
Sopen01g036260 Solanum pennellii HOM05D001638 ORTHO05D005197 6.8e-103 378.6 335 62.1
Solyc01g090470.3 Solanum lycopersicum HOM05D001638 ORTHO05D005197 1.2e-102 377.9 335 61.5
Peaxi162Scf00392g00227 Petunia axillaris HOM05D001638 ORTHO05D005197 2.6e-102 376.7 288 67.0
SalBow6G5432 Salvia bowleyana HOM05D001638 ORTHO05D005197 1.7e-101 374.0 345 59.1
CAN.G362.16 Capsicum annuum HOM05D001638 ORTHO05D005197 2.9e-101 373.2 286 67.5
A03p46940 Brassica napus HOM05D001638 ORTHO05D005197 6.4e-101 372.1 425 53.2
CARHR275090 Cardamine hirsuta HOM05D001638 ORTHO05D005197 8.3e-101 371.7 327 59.0
PGSC0003DMG400026041 Solanum tuberosum HOM05D001638 ORTHO05D005197 4.1e-100 369.4 418 53.8
Lsat_1_v5_gn_4_70960 Lactuca sativa HOM05D001638 ORTHO05D005197 9.2e-100 368.2 448 50.9
BcaC06g33229 Brassica carinata HOM05D001638 ORTHO05D005197 1.2e-99 367.9 332 59.0
THA.LOC104818326 Tarenaya hassleriana HOM05D001638 ORTHO05D005197 1.2e-99 367.9 329 59.9
BraA09t36377Z Brassica rapa HOM05D001638 ORTHO05D005197 2.7e-99 366.7 403 53.6
TPR.G11809 Trifolium pratense HOM05D001638 ORTHO05D005197 2.7e-99 366.7 360 56.4
PSO017G3357 Papaver somniferum HOM05D001638 ORTHO05D005197 6.0e-99 365.5 293 63.5
CDE03G0227 Ceratophyllum demersum HOM05D001638 ORTHO05D005197 3.9e-98 362.8 335 57.9
Aa31LG11G2080 Aethionema arabicum HOM05D001638 ORTHO05D005197 2.9e-93 346.7 311 60.8
FAN06G3795 Fragaria x ananassa HOM05D001638 ORTHO05D005197 6.4e-93 345.5 445 46.3
ATR0057G068 Amborella trichopoda HOM05D001638 ORTHO05D005197 5.4e-92 342.4 308 59.4
ECA234G3220 Erigeron canadensis HOM05D001638 ORTHO05D005197 1.2e-91 341.3 305 61.3
HPP92_024242 Vanilla planifolia HOM05D001638 ORTHO05D005197 4.6e-91 339.3 413 50.6
Zm00001eb333990 Zea mays HOM05D001638 ORTHO05D005197 4.6e-91 339.3 298 58.7
QL01p011221 Quercus lobata HOM05D001638 ORTHO05D005197 1.7e-90 337.4 424 51.4
Zm00001eb127190 Zea mays HOM05D001638 ORTHO05D005197 1.2e-88 331.3 298 57.4
SEGI_12976 Sequoiadendron giganteum HOM05D001638 ORTHO05D005197 9.0e-87 325.1 363 51.2
AL1G10102 Arabidopsis lyrata HOM05D001638 ORTHO05D005197 1.7e-77 294.3 308 53.2
Thhalv10020921m.g Eutrema salsugineum HOM05D001638 ORTHO05D005197 2.9e-77 293.5 305 53.1
Nitab4.5_0000914g0150 Nicotiana tabacum HOM05D001638 ORTHO05D005197 6.7e-74 282.3 293 55.6
Nitab4.5_0010229g0010 Nicotiana tabacum HOM05D001638 ORTHO05D005197 1.3e-69 268.1 225 63.1
SGA_v2.0_scaffold131G34466 Striga asiatica HOM05D001638 ORTHO05D005197 9.3e-68 261.9 226 61.9
Pp3c5_7370 Physcomitrium patens HOM05D001638 ORTHO05D005197 1.7e-61 241.1 329 41.9
Mapoly0029s0122 Marchantia polymorpha HOM05D001638 ORTHO05D005197 6.5e-61 239.2 390 39.0
SHI03505 Sapria himalayana HOM05D001638 ORTHO05D005197 3.5e-59 233.4 313 47.3
MD07G1102000 Malus domestica HOM05D001638 ORTHO05D005197 1.3e-56 224.9 217 56.7
AUR62013726 Chenopodium quinoa HOM05D001638 ORTHO05D005197 1.4e-52 211.5 140 75.7
Atru.chr5.164 Acer truncatum HOM05D001638 ORTHO05D005197 8.5e-45 185.7 235 51.5
Cre13.g587000 Chlamydomonas reinhardtii HOM05D001638 ORTHO05D005197 1.5e-38 164.9 387 31.3
MCO04G285 Micromonas commoda HOM05D001638 ORTHO05D005197 2.6e-38 164.1 350 31.4
FAN06G4892 Fragaria x ananassa HOM05D001638 ORTHO05D005197 7.7e-38 162.5 154 56.5
SMO141G0070 Selaginella moellendorffii HOM05D001638 ORTHO05D005197 1.0e-37 162.2 352 35.5
Atru.chr5.165 Acer truncatum HOM05D001638 ORTHO05D005197 3.8e-37 160.2 112 75.0
Actinidia12156 Actinidia chinensis HOM05D001638 ORTHO05D005197 5.5e-36 156.4 116 64.7
FAN03G2111 Fragaria x ananassa HOM05D001638 ORTHO05D001690 9.4e-36 155.6 149 55.7
AL4G38750 Arabidopsis lyrata HOM05D001638 ORTHO05D005197 1.6e-35 154.8 156 56.4
Haze_17173 Corylus avellana HOM05D001638 ORTHO05D005197 1.1e-33 148.7 217 45.6
arahy.Tifrunner.gnm1.ann1.XG8PKW Arachis hypogaea HOM05D001638 ORTHO05D005197 1.7e-32 144.8 178 47.2
Actinidia12157 Actinidia chinensis HOM05D001638 ORTHO05D005197 5.7e-25 119.8 73 78.1
MD02G1263900 Malus domestica HOM05D001638 ORTHO05D005197 2.4e-23 114.4 96 61.5
MD07G1101900 Malus domestica HOM05D001638 ORTHO05D005197 1.6e-22 111.7 168 41.7
CBR_g1066 Chara braunii HOM05D001638 ORTHO05D005197 1.2e-19 102.1 160 43.8
AagrBONN_evm.TU.Sc2ySwM_368.1521 Anthoceros agrestis HOM05D001638 ORTHO05D005197 1.6e-19 101.7 92 58.7
Oeu051899.1 Olea europaea HOM05D001638 ORTHO05D005197 2.7e-19 100.9 65 76.9
arahy.Tifrunner.gnm1.ann1.XV6DNZ Arachis hypogaea HOM05D001638 ORTHO05D005197 8.0e-19 99.4 60 80.0
Cpa.g.c42599 Carica papaya HOM05D001638 ORTHO05D005197 8.0e-19 99.4 57 84.2
Actinidia12155 Actinidia chinensis HOM05D001638 ORTHO05D005197 1.0e-18 99.0 81 60.5
MD02G1264000 Malus domestica HOM05D001638 ORTHO05D005197 1.4e-18 98.6 71 70.4
Cpa.g.sc116.74 Carica papaya HOM05D001638 ORTHO05D005197 1.8e-18 98.2 68 70.6
MD07G1102300 Malus domestica HOM05D001638 ORTHO05D005197 2.3e-18 97.8 116 47.4
PRCOL_00005874 Prasinoderma coloniale HOM05D001638 ORTHO05D005197 5.2e-18 96.7 337 30.0
Oeu021607.1 Olea europaea HOM05D001638 ORTHO05D005197 6.8e-18 96.3 63 74.6
arahy.Tifrunner.gnm1.ann1.HIFV4E Arachis hypogaea HOM05D001638 ORTHO05D005197 1.5e-17 95.1 184 35.3
FAN06G4261 Fragaria x ananassa HOM05D001638 ORTHO05D005197 2.6e-17 94.4 177 39.5
FvH4_7g09370 Fragaria vesca HOM05D001638 ORTHO05D005197 2.4e-15 87.8 135 43.0
arahy.Tifrunner.gnm1.ann1.11FR17 Arachis hypogaea HOM05D001638 ORTHO05D005197 1.6e-14 85.1 61 65.6
MD02G1264200 Malus domestica HOM05D001638 ORTHO05D005197 1.6e-14 85.1 71 64.8
FAN06G2650 Fragaria x ananassa HOM05D001638 ORTHO05D005197 1.4e-10 72.0 89 49.4
MD07G1073400 Malus domestica HOM05D001638 ORTHO05D005197 9.2e-07 59.3 61 52.5
Sed0021805 Sechium edule HOM05D001638 ORTHO05D005197 2.0e-06 58.2 110 36.4
Cfa024988 Carpinus fangiana HOM05D001638 ORTHO05D124161 5.9e-06 56.6 420 25.0


User provided reference genes

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