Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc02g0002900 Simmondsia chinensis HOM05D004539 ORTHO05D005482 1.5e-276 955.7 513 100.0
Hund17219 Selenicereus undatus HOM05D004539 ORTHO05D005482 9.8e-180 634.0 533 64.5
Hund26867 Selenicereus undatus HOM05D004539 ORTHO05D005482 2.3e-173 612.8 527 63.0
AUR62042221 Chenopodium quinoa HOM05D004539 ORTHO05D005482 1.1e-149 534.3 517 61.9
AUR62034567 Chenopodium quinoa HOM05D004539 ORTHO05D005482 6.8e-149 531.6 517 61.9
EL10Ac1g00555 Beta vulgaris HOM05D004539 ORTHO05D005482 3.8e-147 525.8 517 61.9
TAR629G0090 Trochodendron aralioides HOM05D004539 ORTHO05D005482 3.5e-145 519.2 559 54.7
CiPaw.08G062700 Carya illinoinensis HOM05D004539 ORTHO05D005482 1.9e-143 513.5 543 58.0
AUR62014430 Chenopodium quinoa HOM05D004539 ORTHO05D005482 5.6e-143 511.9 519 60.7
Nn6g32243 Nelumbo nucifera HOM05D004539 ORTHO05D005482 7.6e-140 501.5 553 51.9
MD08G1018100 Malus domestica HOM05D004539 ORTHO05D005482 2.2e-139 500.0 544 57.0
Prupe.1G370700 Prunus persica HOM05D004539 ORTHO05D005482 2.7e-137 493.0 537 55.3
Ah.02g124950 Amaranthus hybridus HOM05D004539 ORTHO05D005482 3.5e-137 492.7 519 58.4
Dinv39486 Davidia involucrata HOM05D004539 ORTHO05D005482 6.0e-137 491.9 536 54.9
Duzib192G0399 Durio zibethinus HOM05D004539 ORTHO05D005482 1.0e-136 491.1 536 52.2
Atru.chr13.359 Acer truncatum HOM05D004539 ORTHO05D005482 1.7e-136 490.3 538 55.9
Thecc.04G277100 Theobroma cacao HOM05D004539 ORTHO05D005482 3.0e-136 489.6 539 55.7
Dinv31810 Davidia involucrata HOM05D004539 ORTHO05D005482 3.9e-136 489.2 540 52.6
GSVIVG01009825001 Vitis vinifera HOM05D004539 ORTHO05D005482 5.1e-136 488.8 525 56.8
Manes.05G152500 Manihot esculenta HOM05D004539 ORTHO05D005482 1.1e-135 487.6 545 54.5
Potri.005G234800 Populus trichocarpa HOM05D004539 ORTHO05D005482 2.8e-134 483.0 549 55.9
COL.COLO4_38586 Corchorus olitorius HOM05D004539 ORTHO05D005482 6.2e-134 481.9 537 52.0
MD15G1017400 Malus domestica HOM05D004539 ORTHO05D005482 8.1e-134 481.5 545 56.3
Cpa.g.sc147.12 Carica papaya HOM05D004539 ORTHO05D005482 3.1e-133 479.6 550 50.9
COL.COLO4_16338 Corchorus olitorius HOM05D004539 ORTHO05D005482 6.9e-133 478.4 534 51.7
Sabra05G0181000 Salix brachista HOM05D004539 ORTHO05D005482 1.7e-131 473.8 549 54.3
vmacro21700 Vaccinium macrocarpon HOM05D004539 ORTHO05D005482 2.2e-131 473.4 547 54.5
Gohir.D07G219000 Gossypium hirsutum HOM05D004539 ORTHO05D005482 1.9e-130 470.3 539 50.6
Sed0008828 Sechium edule HOM05D004539 ORTHO05D005482 2.4e-130 469.9 534 54.5
Rhsim06G0026400 Rhododendron simsii HOM05D004539 ORTHO05D005482 3.2e-130 469.5 546 54.4
Gorai.001G253500 Gossypium raimondii HOM05D004539 ORTHO05D005482 4.2e-130 469.2 539 50.6
Glyma.17G076700 Glycine max HOM05D004539 ORTHO05D005482 5.5e-130 468.8 541 55.5
Cfa013903 Carpinus fangiana HOM05D004539 ORTHO05D005482 7.1e-130 468.4 544 56.4
Gohir.A07G212900 Gossypium hirsutum HOM05D004539 ORTHO05D005482 7.9e-129 464.9 539 50.5
PGR031G2058 Punica granatum HOM05D004539 ORTHO05D005482 2.3e-128 463.4 540 52.8
TWI60G0405 Tripterygium wilfordii HOM05D004539 ORTHO05D005482 2.3e-128 463.4 554 52.9
Haze_22584 Corylus avellana HOM05D004539 ORTHO05D005482 6.7e-128 461.8 527 57.1
CANSAT54G2989 Cannabis sativa HOM05D004539 ORTHO05D005482 8.7e-128 461.5 551 50.6
TAR628G0025 Trochodendron aralioides HOM05D004539 ORTHO05D005482 3.3e-127 459.5 560 50.5
Ciclev10004791m.g Citrus clementina HOM05D004539 ORTHO05D005482 1.3e-126 457.6 537 55.5
Hma1.2p1_0773F.1_g216150 Hydrangea macrophylla HOM05D004539 ORTHO05D005482 1.6e-126 457.2 559 49.9
VMungo1215G0403 Vigna mungo HOM05D004539 ORTHO05D005482 1.6e-126 457.2 540 54.8
Phvul.003G186400 Phaseolus vulgaris HOM05D004539 ORTHO05D005482 2.8e-126 456.4 537 55.1
Sed0017053 Sechium edule HOM05D004539 ORTHO05D005482 6.2e-126 455.3 547 52.8
Glyma.05G023000 Glycine max HOM05D004539 ORTHO05D005482 4.0e-125 452.6 540 51.7
DCAR_013849 Daucus carota HOM05D004539 ORTHO05D005482 4.5e-124 449.1 548 48.7
Sabra02G0022100 Salix brachista HOM05D004539 ORTHO05D005482 7.6e-124 448.4 552 52.4
CsaV3_3G001200 Cucumis sativus L. HOM05D004539 ORTHO05D005482 2.9e-123 446.4 550 52.5
Cpa.g.sc140.19 Carica papaya HOM05D004539 ORTHO05D005482 9.3e-122 441.4 554 50.9
Lj1g0010849 Lotus japonicus HOM05D004539 ORTHO05D005482 1.0e-120 438.0 541 51.9
arahy.Tifrunner.gnm1.ann1.D3BLAG Arachis hypogaea HOM05D004539 ORTHO05D005482 3.0e-120 436.4 565 49.9
Cc10_g02110 Coffea canephora HOM05D004539 ORTHO05D005482 8.7e-120 434.9 532 52.3
Ciclev10011488m.g Citrus clementina HOM05D004539 ORTHO05D005482 2.5e-119 433.3 525 55.4
MELO3C013810.2 Cucumis melo HOM05D004539 ORTHO05D005482 1.3e-118 431.0 542 50.2
THA.LOC104813189 Tarenaya hassleriana HOM05D004539 ORTHO05D005482 1.6e-118 430.6 534 50.7
Thhalv10010315m.g Eutrema salsugineum HOM05D004539 ORTHO05D005482 3.7e-118 429.5 519 52.0
Ca_11952_v3 Cicer arietinum L. HOM05D004539 ORTHO05D005482 1.8e-117 427.2 544 52.0
ClCG05G018590 Citrullus lanatus HOM05D004539 ORTHO05D005482 4.1e-117 426.0 621 47.0
SalBow6G1219 Salvia bowleyana HOM05D004539 ORTHO05D005482 4.1e-117 426.0 545 49.0
Lj4A486G10 Lonicera japonica HOM05D004539 ORTHO05D005482 9.0e-117 424.9 602 48.7
Psat7g263720 Pisum sativum HOM05D004539 ORTHO05D005482 5.9e-116 422.2 556 52.2
Lalb_Chr03g0033831 Lupinus albus HOM05D004539 ORTHO05D005482 1.7e-115 420.6 536 50.4
Aqoxy7G01402 Aquilegia oxysepala HOM05D004539 ORTHO05D005482 5.0e-115 419.1 491 49.7
Nitab4.5_0012730g0010 Nicotiana tabacum HOM05D004539 ORTHO05D005482 3.2e-114 416.4 538 52.2
PSO675G8916 Papaver somniferum HOM05D004539 ORTHO05D005482 3.2e-114 416.4 551 49.2
PSO541G3108 Papaver somniferum HOM05D004539 ORTHO05D005482 7.9e-113 411.8 550 48.7
Aa31LG4G18400 Aethionema arabicum HOM05D004539 ORTHO05D005482 1.1e-111 407.9 526 52.3
Lj4C484T3 Lonicera japonica HOM05D004539 ORTHO05D005482 1.5e-111 407.5 506 51.0
Ca_22519_v3 Cicer arietinum L. HOM05D004539 ORTHO05D005482 3.3e-111 406.4 552 49.8
SGA_v2.0_scaffold92G28288 Striga asiatica HOM05D004539 ORTHO05D005482 1.1e-109 401.4 547 46.8
CAN.G851.13 Capsicum annuum HOM05D004539 ORTHO05D005482 3.1e-109 399.8 542 52.0
SGA_v2.0_scaffold4G01895 Striga asiatica HOM05D004539 ORTHO05D005482 4.1e-109 399.4 545 45.9
Lsat_1_v5_gn_4_116341 Lactuca sativa HOM05D004539 ORTHO05D005482 3.4e-108 396.4 544 47.1
Actinidia29798 Actinidia chinensis HOM05D004539 ORTHO05D005482 1.7e-107 394.0 541 47.7
Carub.0005s1635 Capsella rubella HOM05D004539 ORTHO05D005482 2.9e-107 393.3 520 52.5
Lj2g0012026 Lotus japonicus HOM05D004539 ORTHO05D005482 2.9e-107 393.3 547 49.0
arahy.Tifrunner.gnm1.ann1.ME0SR7 Arachis hypogaea HOM05D004539 ORTHO05D005482 5.0e-107 392.5 555 45.6
Medtr4g022890 Medicago truncatula HOM05D004539 ORTHO05D005482 8.5e-107 391.7 550 51.3
MSTRG.25219 Avicennia marina HOM05D004539 ORTHO05D005482 1.1e-106 391.3 536 47.8
Migut.C00791 Erythranthe guttata HOM05D004539 ORTHO05D005482 4.2e-106 389.4 534 45.5
BcaC06g33116 Brassica carinata HOM05D004539 ORTHO05D005482 5.5e-106 389.0 530 51.7
ECA232G1826 Erigeron canadensis HOM05D004539 ORTHO05D005482 5.5e-106 389.0 527 47.1
Oeu036929.3 Olea europaea HOM05D004539 ORTHO05D005482 7.2e-106 388.7 576 43.6
TPR.G5561 Trifolium pratense HOM05D004539 ORTHO05D005482 9.4e-106 388.3 551 49.9
AT3G49990 Arabidopsis thaliana HOM05D004539 ORTHO05D005482 1.6e-105 387.5 519 49.1
Sp5g12110 Schrenkiella parvula HOM05D004539 ORTHO05D005482 3.6e-105 386.3 517 51.1
AL5G30050 Arabidopsis lyrata HOM05D004539 ORTHO05D005482 6.7e-104 382.1 523 47.4
BraA03t13876Z Brassica rapa HOM05D004539 ORTHO05D005482 4.3e-103 379.4 528 50.0
A03p47640 Brassica napus HOM05D004539 ORTHO05D005482 5.7e-103 379.0 525 50.9
ATR0691G247 Amborella trichopoda HOM05D004539 ORTHO05D005482 2.2e-102 377.1 550 47.1
MBI05_g04844_MAGBIO Magnolia biondii HOM05D004539 ORTHO05D005482 4.8e-102 375.9 710 40.8
HPP92_016110 Vanilla planifolia HOM05D004539 ORTHO05D005482 9.1e-101 371.7 545 44.0
BolC7t45082H Brassica oleracea HOM05D004539 ORTHO05D005482 2.0e-100 370.5 519 49.9
CARHR159060 Cardamine hirsuta HOM05D004539 ORTHO05D005482 2.0e-100 370.5 522 50.4
Peaxi162Scf00287g00122 Petunia axillaris HOM05D004539 ORTHO05D005482 3.4e-100 369.8 543 49.5
BcaC06g33276 Brassica carinata HOM05D004539 ORTHO05D005482 1.3e-99 367.9 526 49.4
C07p45610 Brassica napus HOM05D004539 ORTHO05D005482 1.3e-99 367.9 526 49.4
Solyc04g081030.3 Solanum lycopersicum HOM05D004539 ORTHO05D005482 2.5e-98 363.6 543 49.9
unitig_578.g16661 Utricularia gibba HOM05D004539 ORTHO05D005482 1.1e-95 354.8 535 45.4
FAN20G1687 Fragaria x ananassa HOM05D004539 ORTHO05D005482 1.3e-94 351.3 542 46.3
Sopen04g034650 Solanum pennellii HOM05D004539 ORTHO05D005482 1.1e-93 348.2 461 49.2
Oeu030391.1 Olea europaea HOM05D004539 ORTHO05D005482 5.3e-93 345.9 524 46.4
FAN15G3183 Fragaria x ananassa HOM05D004539 ORTHO05D005482 1.2e-92 344.7 550 45.5
FvH4_2g39030 Fragaria vesca HOM05D004539 ORTHO05D005482 4.5e-92 342.8 546 45.6
PGSC0003DMG400003712 Solanum tuberosum HOM05D004539 ORTHO05D005482 1.3e-91 341.3 510 45.5
FAN27G2077 Fragaria x ananassa HOM05D004539 ORTHO05D005482 1.7e-91 340.9 550 45.3
CDE12G0120 Ceratophyllum demersum HOM05D004539 ORTHO05D005482 9.4e-90 335.1 565 39.5
RcHm_v2.0_Chr6g0302141 Rosa chinensis HOM05D004539 ORTHO05D005482 9.4e-90 335.1 548 46.5
Lj4C792T1 Lonicera japonica HOM05D004539 ORTHO05D005482 4.0e-88 329.7 554 44.4
HanXRQChr09g0269371 Helianthus annuus HOM05D004539 ORTHO05D005482 1.1e-87 328.2 415 48.2
Os03g0372700 Oryza sativa ssp. japonica HOM05D004539 ORTHO05D005482 2.0e-79 300.8 514 44.6
SEGI_17236 Sequoiadendron giganteum HOM05D004539 ORTHO05D005482 1.3e-78 298.1 590 38.5
Zm00001eb394100 Zea mays HOM05D004539 ORTHO05D005482 2.5e-74 283.9 509 44.8
Zm00001eb394110 Zea mays HOM05D004539 ORTHO05D005482 2.5e-74 283.9 509 44.8
Zm00001eb018110 Zea mays HOM05D004539 ORTHO05D005482 3.2e-74 283.5 509 45.2
CAN.G851.15 Capsicum annuum HOM05D004539 ORTHO05D005482 1.2e-71 275.0 392 45.7
QL02p010726 Quercus lobata HOM05D004539 ORTHO05D005482 4.9e-70 269.6 294 53.4
Cpa.g.sc1191.1 Carica papaya HOM05D004539 ORTHO05D005482 4.7e-65 253.1 297 52.2
Eucgr.E04075 Eucalyptus grandis HOM05D004539 ORTHO05D005482 5.7e-63 246.1 318 47.8
FvH4_7g07450 Fragaria vesca HOM05D004539 ORTHO05D005482 1.0e-56 225.3 403 43.7
QL02p010735 Quercus lobata HOM05D004539 ORTHO05D005482 1.0e-56 225.3 251 61.8
FAN10G3704 Fragaria x ananassa HOM05D004539 ORTHO05D005482 4.1e-53 213.4 396 44.9
Pp3c26_3100 Physcomitrium patens HOM05D004539 ORTHO05D005482 3.1e-48 197.2 569 31.3
Mapoly0079s0035 Marchantia polymorpha HOM05D004539 ORTHO05D005482 1.2e-44 185.3 594 30.0
CDE04G1317 Ceratophyllum demersum HOM05D004539 ORTHO05D009003 1.7e-43 181.4 501 35.3
SEGI_09517 Sequoiadendron giganteum HOM05D004539 ORTHO05D005482 8.6e-43 179.1 417 34.8
SHI27908 Sapria himalayana HOM05D004539 ORTHO05D005482 4.0e-40 170.2 289 39.8
TAR628G0156 Trochodendron aralioides HOM05D004539 ORTHO05D005482 1.7e-38 164.9 150 58.0
FAN22G0834 Fragaria x ananassa HOM05D004539 ORTHO05D005482 9.2e-37 159.1 284 41.2
Nitab4.5_0006718g0010 Nicotiana tabacum HOM05D004539 ORTHO05D005482 4.6e-36 156.8 180 50.0
FAN06G2453 Fragaria x ananassa HOM05D004539 ORTHO05D005482 1.7e-35 154.8 262 46.6
AagrBONN_evm.TU.Sc2ySwM_344.1857 Anthoceros agrestis HOM05D004539 ORTHO05D005482 5.1e-35 153.3 530 29.4
FAN01G2597 Fragaria x ananassa HOM05D004539 ORTHO05D005482 3.1e-32 144.1 224 48.7
CBR_g23809 Chara braunii HOM05D004539 ORTHO05D005482 2.6e-31 141.0 720 26.8
Zm00001eb328540 Zea mays HOM05D004539 ORTHO05D005482 3.3e-26 124.0 450 27.1
Os07g0634300 Oryza sativa ssp. japonica HOM05D004539 ORTHO05D005482 4.8e-25 120.2 226 39.8
FAN05G0730 Fragaria x ananassa HOM05D000664 ORTHO05D000491 4.5e-23 113.6 99 61.6
AagrBONN_evm.TU.Sc2ySwM_344.3799 Anthoceros agrestis HOM05D004539 ORTHO05D005482 3.3e-18 97.4 462 27.1
MELO3C004859.2 Cucumis melo HOM05D004539 ORTHO05D005482 2.1e-17 94.7 98 52.0
Rhsim06G0016800 Rhododendron simsii HOM05D004539 ORTHO05D005482 4.0e-16 90.5 140 46.4
Rhsim06G0017000 Rhododendron simsii HOM05D004539 ORTHO05D005482 4.5e-15 87.0 108 49.1
TAR369G0231 Trochodendron aralioides HOM05D004539 ORTHO05D005482 1.1e-13 82.4 102 42.2
SMO367G1003 Selaginella moellendorffii HOM05D004539 ORTHO05D005482 9.3e-13 79.3 175 31.4
PRCOL_00001157 Prasinoderma coloniale HOM05D004539 ORTHO05D005482 1.0e-11 75.9 368 26.9
Potri.002G028100 Populus trichocarpa HOM05D004539 ORTHO05D005482 6.7e-11 73.2 124 41.1
BcaB05g23177 Brassica carinata HOM05D004539 ORTHO05D005482 4.3e-10 70.5 108 42.6
MELO3C014949.2 Cucumis melo HOM05D004539 ORTHO05D005482 4.8e-09 67.0 124 35.5
AagrBONN_evm.TU.Sc2ySwM_344.1880 Anthoceros agrestis HOM05D004539 ORTHO05D005482 2.4e-08 64.7 231 26.8
Actinidia15387 Actinidia chinensis HOM05D004539 ORTHO05D005482 4.0e-08 63.9 105 36.2
MELO3C034665.2 Cucumis melo HOM05D004539 ORTHO05D005482 1.7e-06 58.5 165 30.3


User provided reference genes

Program Settings