Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc02g0002800 Simmondsia chinensis HOM05D006954 ORTHO05D008729 1.0e-261 906.4 526 100.0
Hund17048 Selenicereus undatus HOM05D006954 ORTHO05D008729 1.9e-69 267.7 526 42.6
EL10Ac1g00835 Beta vulgaris HOM05D006954 ORTHO05D008729 1.8e-59 234.6 508 40.0
Ah.05g173790 Amaranthus hybridus HOM05D006954 ORTHO05D008729 6.7e-59 232.6 517 42.0
AUR62013686 Chenopodium quinoa HOM05D006954 ORTHO05D008729 1.9e-53 214.5 396 40.4
AUR62004161 Chenopodium quinoa HOM05D006954 ORTHO05D008729 2.3e-51 207.6 363 41.9
Ciclev10023836m.g Citrus clementina HOM05D006638 ORTHO05D008246 6.1e-44 183.0 461 35.1
QL04p036098 Quercus lobata HOM05D006954 ORTHO05D008729 3.0e-43 180.6 455 38.0
Dinv43668 Davidia involucrata HOM05D006954 ORTHO05D008729 8.8e-43 179.1 441 36.5
CiPaw.14G025200 Carya illinoinensis HOM05D006954 ORTHO05D008729 2.6e-42 177.6 347 40.1
QL04p036667 Quercus lobata HOM05D006954 ORTHO05D008729 1.4e-40 171.8 455 36.5
QL04p036448 Quercus lobata HOM05D006954 ORTHO05D008729 1.8e-40 171.4 455 38.5
GSVIVG01018156001 Vitis vinifera HOM05D006638 ORTHO05D008246 1.8e-40 171.4 429 36.8
Prupe.2G137000 Prunus persica HOM05D006954 ORTHO05D008729 7.0e-40 169.5 266 43.6
Atru.chr5.233 Acer truncatum HOM05D006954 ORTHO05D008729 1.6e-39 168.3 409 39.9
Duzib133G0753 Durio zibethinus HOM05D006954 ORTHO05D008729 2.7e-39 167.5 319 39.8
Cfa011147 Carpinus fangiana HOM05D001088 ORTHO05D002099 1.3e-38 165.2 467 34.9
Haze_02712 Corylus avellana HOM05D006954 ORTHO05D008729 1.3e-38 165.2 450 35.8
COL.COLO4_12483 Corchorus olitorius HOM05D006954 ORTHO05D008729 1.7e-38 164.9 319 39.2
Oeu031219.1 Olea europaea HOM05D006954 ORTHO05D008729 2.3e-38 164.5 211 49.3
Dinv21639 Davidia involucrata HOM05D006954 ORTHO05D008729 3.8e-38 163.7 264 41.3
TAR375G1092 Trochodendron aralioides HOM05D006954 ORTHO05D008729 6.6e-38 162.9 343 37.0
FAN06G0609 Fragaria x ananassa HOM05D006954 ORTHO05D008729 8.6e-38 162.5 227 48.0
FAN10G2562 Fragaria x ananassa HOM05D006954 ORTHO05D008729 8.6e-38 162.5 214 49.1
Gohir.A07G147000 Gossypium hirsutum HOM05D006954 ORTHO05D008729 1.5e-37 161.8 355 38.6
Solyc01g090850.3 Solanum lycopersicum HOM05D006954 ORTHO05D008729 1.5e-37 161.8 416 34.9
Gorai.001G175100 Gossypium raimondii HOM05D006954 ORTHO05D008729 1.9e-37 161.4 357 41.2
Thecc.01G384400 Theobroma cacao HOM05D006954 ORTHO05D008729 1.9e-37 161.4 578 32.7
MD02G1210900 Malus domestica HOM05D006954 ORTHO05D008729 3.3e-37 160.6 297 40.7
Oeu009770.1 Olea europaea HOM05D006954 ORTHO05D008729 5.6e-37 159.8 362 36.5
Rhsim07G0108500 Rhododendron simsii HOM05D001088 ORTHO05D002099 7.3e-37 159.5 240 45.0
Gohir.D07G153000 Gossypium hirsutum HOM05D006954 ORTHO05D008729 9.5e-37 159.1 355 41.4
FAN10G3525 Fragaria x ananassa HOM05D006954 ORTHO05D008729 1.2e-36 158.7 205 48.8
FAN01G1544 Fragaria x ananassa HOM05D006954 ORTHO05D008729 3.6e-36 157.1 357 38.1
TAR375G0455 Trochodendron aralioides HOM05D006954 ORTHO05D008729 4.7e-36 156.8 386 34.2
Nitab4.5_0011151g0020 Nicotiana tabacum HOM05D006954 ORTHO05D008729 1.4e-35 155.2 292 39.4
QL12p012133 Quercus lobata HOM05D006954 ORTHO05D008729 2.3e-35 154.5 285 38.9
vmacro14083 Vaccinium macrocarpon HOM05D006954 ORTHO05D008729 4.0e-35 153.7 240 43.8
FAN06G1022 Fragaria x ananassa HOM05D006954 ORTHO05D008729 5.2e-35 153.3 224 47.8
Peaxi162Scf00803g00025 Petunia axillaris HOM05D006954 ORTHO05D008729 8.9e-35 152.5 350 34.6
TWI59G0609 Tripterygium wilfordii HOM05D006954 ORTHO05D008729 1.5e-34 151.8 647 29.8
Sopen01g036590 Solanum pennellii HOM05D006954 ORTHO05D008729 2.6e-34 151.0 413 34.1
CAN.G1872.2 Capsicum annuum HOM05D006954 ORTHO05D008729 4.4e-34 150.2 289 38.8
PGSC0003DMG400026019 Solanum tuberosum HOM05D006954 ORTHO05D008729 9.8e-34 149.1 387 34.9
Aqoxy7G00762 Aquilegia oxysepala HOM05D006954 ORTHO05D008729 4.9e-33 146.7 281 37.0
Nitab4.5_0000859g0170 Nicotiana tabacum HOM05D006954 ORTHO05D008729 1.8e-32 144.8 282 39.4
Rhsim07G0031700 Rhododendron simsii HOM05D001088 ORTHO05D002099 1.8e-32 144.8 305 39.3
ECA233G0962 Erigeron canadensis HOM05D006954 ORTHO05D008729 4.1e-32 143.7 318 41.2
FAN03G1627 Fragaria x ananassa HOM05D006954 ORTHO05D008729 5.4e-32 143.3 407 36.6
Manes.01G080700 Manihot esculenta HOM05D006954 ORTHO05D008729 7.0e-32 142.9 243 41.6
Actinidia27466 Actinidia chinensis HOM05D001088 ORTHO05D002099 5.9e-31 139.8 210 43.8
Lj8P262T33 Lonicera japonica HOM05D006954 ORTHO05D008729 1.3e-30 138.7 238 39.9
RcHm_v2.0_Chr1g0349021 Rosa chinensis HOM05D006954 ORTHO05D008729 5.0e-30 136.7 345 36.5
Lj6C70T9 Lonicera japonica HOM05D006954 ORTHO05D008729 6.6e-30 136.3 236 41.1
Hma1.2p1_0041F.1_g025380 Hydrangea macrophylla HOM05D006954 ORTHO05D008729 3.3e-29 134.0 416 31.2
MD07G1114400 Malus domestica HOM05D006954 ORTHO05D008729 1.2e-28 132.1 537 30.4
SHI20280 Sapria himalayana HOM05D006954 ORTHO05D008729 3.6e-28 130.6 249 35.7
SalBow5G1520 Salvia bowleyana HOM05D006954 ORTHO05D008729 6.2e-28 129.8 220 40.5
Glyma.11G167382 Glycine max HOM05D006954 ORTHO05D008729 1.0e-27 129.0 413 35.4
Lalb_Chr01g0021361 Lupinus albus HOM05D006954 ORTHO05D008729 4.0e-27 127.1 322 35.4
arahy.Tifrunner.gnm1.ann1.UR8A7Q Arachis hypogaea HOM05D006954 ORTHO05D008729 5.2e-27 126.7 253 36.8
Lj3g0019070 Lotus japonicus HOM05D006954 ORTHO05D008729 2.0e-26 124.8 398 35.7
Eucgr.E00424 Eucalyptus grandis HOM05D006954 ORTHO05D008729 5.8e-26 123.2 296 33.1
arahy.Tifrunner.gnm1.ann1.LN378K Arachis hypogaea HOM05D006954 ORTHO05D008729 1.7e-25 121.7 410 34.6
Ciclev10019520m.g Citrus clementina HOM05D006954 ORTHO05D008729 1.7e-25 121.7 283 36.0
Lj2A217G32 Lonicera japonica HOM05D006954 ORTHO05D008729 2.2e-25 121.3 222 39.2
PGR042G3906 Punica granatum HOM05D006954 ORTHO05D008729 2.9e-25 120.9 267 36.7
VMungo1383G2724 Vigna mungo HOM05D006954 ORTHO05D008729 3.7e-25 120.6 317 35.3
PSO017G4363 Papaver somniferum HOM05D006954 ORTHO05D008729 8.3e-25 119.4 261 36.0
Lsat_1_v5_gn_7_8881 Lactuca sativa HOM05D006954 ORTHO05D008729 7.0e-24 116.3 185 40.5
SGA_v2.0_scaffold11G05525 Striga asiatica HOM05D006954 ORTHO05D008729 7.0e-24 116.3 217 39.6
Glyma.01G134400 Glycine max HOM05D006954 ORTHO05D008729 9.2e-24 115.9 498 33.5
Phvul.010G071500 Phaseolus vulgaris HOM05D006954 ORTHO05D008729 1.2e-23 115.5 481 33.1
DCAR_006832 Daucus carota HOM05D001088 ORTHO05D002099 2.0e-23 114.8 237 37.1
Hma1.2p1_0316F.1_g123150 Hydrangea macrophylla HOM05D006954 ORTHO05D008729 2.0e-23 114.8 310 35.5
Glyma.03G033300 Glycine max HOM05D006954 ORTHO05D008729 2.7e-23 114.4 491 34.0
PSO170G0413 Papaver somniferum HOM05D006954 ORTHO05D008729 3.5e-23 114.0 262 38.2
Phvul.008G143700 Phaseolus vulgaris HOM05D006954 ORTHO05D008729 1.0e-22 112.5 316 33.2
HanXRQChr16g0511611 Helianthus annuus HOM05D006954 ORTHO05D008729 3.9e-22 110.5 252 37.3
Oeu026406.1 Olea europaea HOM05D006954 ORTHO05D008729 5.0e-22 110.2 252 34.1
Ca_19859_v3 Cicer arietinum L. HOM05D006954 ORTHO05D008729 3.3e-21 107.5 515 30.9
FvH4_5g18930 Fragaria vesca HOM05D006954 ORTHO05D008729 5.6e-21 106.7 213 32.9
FAN04G0536 Fragaria x ananassa HOM05D006954 ORTHO05D008729 7.3e-21 106.3 230 32.6
FAN13G0002 Fragaria x ananassa HOM05D006954 ORTHO05D008729 2.8e-20 104.4 230 30.9
HanXRQChr06g0168891 Helianthus annuus HOM05D006954 ORTHO05D008729 4.7e-20 103.6 186 38.7
HanXRQChr06g0169051 Helianthus annuus HOM05D006954 ORTHO05D008729 4.7e-20 103.6 186 38.7
ECA236G3196 Erigeron canadensis HOM05D006954 ORTHO05D008729 6.2e-20 103.2 356 31.5
FAN18G2950 Fragaria x ananassa HOM05D006954 ORTHO05D008729 8.1e-20 102.8 230 31.7
TPR.G4994 Trifolium pratense HOM05D006954 ORTHO05D008246 1.8e-19 101.7 448 31.2
Lalb_Chr07g0190311 Lupinus albus HOM05D006954 ORTHO05D008729 8.9e-19 99.4 511 29.2
TAR636G1544 Trochodendron aralioides HOM05D006954 ORTHO05D008729 1.5e-18 98.6 145 42.8
Duzib205G0178 Durio zibethinus HOM05D006954 ORTHO05D008729 3.4e-18 97.4 244 34.4
RcHm_v2.0_Chr7g0203321 Rosa chinensis HOM05D006954 ORTHO05D008729 9.8e-18 95.9 392 27.8
MBI04_g09501_MAGBIO Magnolia biondii HOM05D006954 ORTHO05D008729 4.9e-17 93.6 199 34.7
CDE11G0492 Ceratophyllum demersum HOM05D006954 ORTHO05D008729 6.4e-17 93.2 213 33.3
Duzib136G0004 Durio zibethinus HOM05D006954 ORTHO05D008729 8.3e-17 92.8 243 32.5
Psat0s3685g0160 Pisum sativum HOM05D006954 ORTHO05D008729 1.1e-16 92.4 406 30.5
COL.COLO4_37173 Corchorus olitorius HOM05D006954 ORTHO05D008729 5.4e-16 90.1 220 30.5
HPP92_008568 Vanilla planifolia HOM05D006954 ORTHO05D008729 9.2e-16 89.4 312 31.7
Lj9P565T15 Lonicera japonica HOM05D006954 ORTHO05D008729 2.1e-15 88.2 71 60.6
Nitab4.5_0000618g0050 Nicotiana tabacum HOM05D020458 ORTHO05D022160 1.7e-14 85.1 194 31.4
Prupe.5G069800 Prunus persica HOM05D006954 ORTHO05D008729 8.6e-14 82.8 225 30.2
Zm00001eb023500 Zea mays HOM05D006954 ORTHO05D008729 2.8e-12 77.8 272 26.8
Nn6g33957 Nelumbo nucifera HOM05D006954 ORTHO05D008729 5.2e-11 73.6 59 61.0
Zm00001eb391500 Zea mays HOM05D006954 ORTHO05D008729 5.2e-11 73.6 268 26.5
TAR636G1204 Trochodendron aralioides HOM05D005220 ORTHO05D006082 1.5e-10 72.0 168 34.5
Haze_07684 Corylus avellana HOM05D005220 ORTHO05D006082 5.8e-10 70.1 166 30.1
Lalb_Chr17g0337031 Lupinus albus HOM05D005220 ORTHO05D006082 5.8e-10 70.1 164 31.1
Nitab4.5_0001076g0060 Nicotiana tabacum HOM05D020458 ORTHO05D022160 5.8e-10 70.1 188 28.2
Cfa019301 Carpinus fangiana HOM05D005220 ORTHO05D006082 7.6e-10 69.7 166 30.7
Cc07_g04000 Coffea canephora HOM05D005220 ORTHO05D006082 9.9e-10 69.3 174 32.8
Nn3g17397 Nelumbo nucifera HOM05D005220 ORTHO05D006082 2.2e-09 68.2 163 33.1
CDE09G0910 Ceratophyllum demersum HOM05D006954 ORTHO05D008729 2.9e-09 67.8 194 31.4
TAR629G0541 Trochodendron aralioides HOM05D005220 ORTHO05D006082 3.8e-09 67.4 163 31.9
Dinv34960 Davidia involucrata HOM05D005220 ORTHO05D006082 1.1e-08 65.9 165 28.5
Oeu010241.1 Olea europaea HOM05D005220 ORTHO05D006082 1.4e-08 65.5 163 32.5
TAR622G0939 Trochodendron aralioides HOM05D005220 ORTHO05D006082 1.4e-08 65.5 164 29.9
CSS0002601 Camellia sinensis var. sinensis HOM05D005220 ORTHO05D006082 1.9e-08 65.1 168 31.0
Glyma.08G242800 Glycine max HOM05D005220 ORTHO05D006082 1.9e-08 65.1 170 27.6
Potri.017G091700 Populus trichocarpa HOM05D005220 ORTHO05D006082 1.9e-08 65.1 170 30.0
MSTRG.3015 Avicennia marina HOM05D005220 ORTHO05D006082 3.2e-08 64.3 171 28.1
CiPaw.11G050100 Carya illinoinensis HOM05D005220 ORTHO05D006082 3.2e-08 64.3 196 27.6
arahy.Tifrunner.gnm1.ann1.ADMQ1S Arachis hypogaea HOM05D006954 ORTHO05D008729 4.1e-08 63.9 285 27.4
ATR0317G083 Amborella trichopoda HOM05D006954 ORTHO05D008729 9.2e-08 62.8 331 27.5
TAR374G0076 Trochodendron aralioides HOM05D005220 ORTHO05D006082 9.2e-08 62.8 163 31.9
ATR0064G106 Amborella trichopoda HOM05D005220 ORTHO05D006082 1.2e-07 62.4 168 31.0
Dinv33817 Davidia involucrata HOM05D005220 ORTHO05D006082 1.2e-07 62.4 176 29.0
Lalb_Chr23g0273001 Lupinus albus HOM05D005220 ORTHO05D006082 1.2e-07 62.4 183 25.1
Sabra17G0080700 Salix brachista HOM05D005220 ORTHO05D006082 1.2e-07 62.4 164 30.5
Actinidia01983 Actinidia chinensis HOM05D005220 ORTHO05D006082 1.6e-07 62.0 185 28.1
DCAR_011050 Daucus carota HOM05D005220 ORTHO05D006082 1.6e-07 62.0 193 26.9
Manes.01G098100 Manihot esculenta HOM05D005220 ORTHO05D006082 1.6e-07 62.0 163 31.3
Sopen06g020850 Solanum pennellii HOM05D020458 ORTHO05D022160 1.6e-07 62.0 88 38.6
Ah.11g047990 Amaranthus hybridus HOM05D005220 ORTHO05D006082 2.1e-07 61.6 205 26.3
arahy.Tifrunner.gnm1.ann1.Y71GGS Arachis hypogaea HOM05D005220 ORTHO05D006082 2.1e-07 61.6 186 28.0
ClCG06G015820 Citrullus lanatus HOM05D005220 ORTHO05D006082 2.1e-07 61.6 204 25.0
Glyma.18G265000 Glycine max HOM05D005220 ORTHO05D006082 2.1e-07 61.6 180 27.2
Hma1.2p1_0481F.1_g161950 Hydrangea macrophylla HOM05D005220 ORTHO05D006082 2.1e-07 61.6 164 29.3
TWI34G1812 Tripterygium wilfordii HOM05D005220 ORTHO05D006082 2.1e-07 61.6 163 33.1
arahy.Tifrunner.gnm1.ann1.UWUI2N Arachis hypogaea HOM05D005220 ORTHO05D006082 2.7e-07 61.2 186 27.4
Thecc.03G251300 Theobroma cacao HOM05D006954 ORTHO05D008729 2.7e-07 61.2 82 42.7
QL04p036188 Quercus lobata HOM05D006954 ORTHO05D008729 3.5e-07 60.8 379 28.0
Sed0003803 Sechium edule HOM05D005220 ORTHO05D006082 3.5e-07 60.8 181 23.2
Actinidia07816 Actinidia chinensis HOM05D005220 ORTHO05D006082 4.6e-07 60.5 173 27.2
Lsat_1_v5_gn_2_87740 Lactuca sativa HOM05D005220 ORTHO05D006082 4.6e-07 60.5 163 28.8
Prupe.5G201200 Prunus persica HOM05D005220 ORTHO05D006082 4.6e-07 60.5 163 30.7
MELO3C017209.2 Cucumis melo HOM05D005220 ORTHO05D006082 6.0e-07 60.1 184 29.3
Lju41C5T5 Lonicera japonica HOM05D005220 ORTHO05D006082 6.0e-07 60.1 162 27.8
arahy.Tifrunner.gnm1.ann1.7WP6A4 Arachis hypogaea HOM05D006954 ORTHO05D008729 7.8e-07 59.7 285 26.0
Solyc06g060730.3 Solanum lycopersicum HOM05D020458 ORTHO05D022160 1.0e-06 59.3 104 38.5
Ciclev10020317m.g Citrus clementina HOM05D005220 ORTHO05D006082 1.3e-06 58.9 171 31.0
Oeu062150.1 Olea europaea HOM05D005220 ORTHO05D006082 1.7e-06 58.5 173 26.0
VMungo1383G2795 Vigna mungo HOM05D005220 ORTHO05D006082 1.7e-06 58.5 217 24.0
Lj1g0008070 Lotus japonicus HOM05D005220 ORTHO05D006082 3.0e-06 57.8 170 26.5
Sc04g0003090 Simmondsia chinensis HOM05D005220 ORTHO05D006082 3.0e-06 57.8 174 28.7
CiPaw.04G057500 Carya illinoinensis HOM05D005220 ORTHO05D006082 5.1e-06 57.0 166 26.5
AUR62021593 Chenopodium quinoa HOM05D005220 ORTHO05D006082 6.6e-06 56.6 185 27.6
Sc10g0003210 Simmondsia chinensis HOM05D005220 ORTHO05D006082 6.6e-06 56.6 164 29.3
TWI60G0661 Tripterygium wilfordii HOM05D005220 ORTHO05D006082 6.6e-06 56.6 163 38.7
Aqoxy3G03583 Aquilegia oxysepala HOM05D005220 ORTHO05D006082 8.6e-06 56.2 175 30.9
CDE10G0382 Ceratophyllum demersum HOM05D005220 ORTHO05D006082 8.6e-06 56.2 163 30.7
Rhsim10G0044300 Rhododendron simsii HOM05D005220 ORTHO05D006082 8.6e-06 56.2 190 28.4
vmacro18154 Vaccinium macrocarpon HOM05D005220 ORTHO05D006082 8.6e-06 56.2 162 27.2
GSVIVG01011505001 Vitis vinifera HOM05D005220 ORTHO05D006082 8.6e-06 56.2 171 28.7


User provided reference genes

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