Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc02g0002770 Simmondsia chinensis HOM05D005802 ORTHO05D006992 1.0e-143 513.5 270 100.0
AUR62013665 Chenopodium quinoa HOM05D005802 ORTHO05D006992 8.4e-106 387.5 271 74.2
GSVIVG01027639001 Vitis vinifera HOM05D005802 ORTHO05D006992 1.5e-102 376.7 270 71.1
COL.COLO4_12497 Corchorus olitorius HOM05D005802 ORTHO05D006992 1.9e-102 376.3 274 72.3
Nn6g34003 Nelumbo nucifera HOM05D005802 ORTHO05D006992 3.3e-102 375.6 270 71.5
Duzib133G1160 Durio zibethinus HOM05D005802 ORTHO05D006992 4.3e-102 375.2 275 73.5
Thecc.01G381900 Theobroma cacao HOM05D005802 ORTHO05D006992 5.6e-102 374.8 275 72.7
TAR375G0577 Trochodendron aralioides HOM05D005802 ORTHO05D006992 3.7e-101 372.1 268 70.1
CiPaw.13G033000 Carya illinoinensis HOM05D005802 ORTHO05D006992 4.8e-101 371.7 270 70.7
PGR042G3152 Punica granatum HOM05D005802 ORTHO05D006992 8.1e-101 370.9 271 71.2
MD02G1209900 Malus domestica HOM05D005802 ORTHO05D006992 1.4e-100 370.2 267 69.7
Manes.05G048500 Manihot esculenta HOM05D005802 ORTHO05D006992 2.4e-100 369.4 270 70.7
Potri.014G060000 Populus trichocarpa HOM05D005802 ORTHO05D006992 2.4e-100 369.4 270 72.2
Atru.chr5.259 Acer truncatum HOM05D005802 ORTHO05D006992 6.9e-100 367.9 271 74.2
Gohir.A12G094400 Gossypium hirsutum HOM05D005802 ORTHO05D006992 9.0e-100 367.5 270 71.9
Haze_02673 Corylus avellana HOM05D005802 ORTHO05D006992 1.5e-99 366.7 274 68.6
Gohir.D12G097200 Gossypium hirsutum HOM05D005802 ORTHO05D006992 2.0e-99 366.3 270 71.9
Eucgr.D02489 Eucalyptus grandis HOM05D005802 ORTHO05D006992 2.6e-99 365.9 271 70.5
QL04p039160 Quercus lobata HOM05D005802 ORTHO05D006992 4.5e-99 365.2 272 70.2
CANSAT56G0664 Cannabis sativa HOM05D005802 ORTHO05D006992 5.8e-99 364.8 272 69.9
Rhsim01G0150000 Rhododendron simsii HOM05D005802 ORTHO05D006992 2.2e-98 362.8 270 70.0
Lj3g0015572 Lotus japonicus HOM05D005802 ORTHO05D006992 3.8e-98 362.1 271 69.7
Ciclev10021687m.g Citrus clementina HOM05D005802 ORTHO05D006992 6.5e-98 361.3 270 71.5
Prupe.2G138600 Prunus persica HOM05D005802 ORTHO05D006992 6.5e-98 361.3 267 68.9
Hund27376 Selenicereus undatus HOM05D005802 ORTHO05D006992 1.4e-97 360.1 270 72.2
Gorai.008G105800 Gossypium raimondii HOM05D005802 ORTHO05D006992 2.5e-97 359.4 270 70.7
Cpa.g.sc49.162 Carica papaya HOM05D005802 ORTHO05D006992 3.2e-97 359.0 272 70.6
PSO017G7043 Papaver somniferum HOM05D005802 ORTHO05D006992 3.2e-97 359.0 272 69.1
PSO478G1061 Papaver somniferum HOM05D005802 ORTHO05D006992 1.2e-96 357.1 272 68.8
Sabra14G0043900 Salix brachista HOM05D005802 ORTHO05D006992 2.1e-96 356.3 279 68.5
BolC8t51149H Brassica oleracea HOM05D005802 ORTHO05D006992 4.6e-96 355.1 270 69.3
arahy.Tifrunner.gnm1.ann1.I9SF1K Arachis hypogaea HOM05D005802 ORTHO05D006992 6.0e-96 354.8 267 69.3
AUR62004168 Chenopodium quinoa HOM05D005802 ORTHO05D006992 6.0e-96 354.8 271 69.4
Actinidia12678 Actinidia chinensis HOM05D005802 ORTHO05D006992 7.9e-96 354.4 265 69.4
TWI23G1076 Tripterygium wilfordii HOM05D005802 ORTHO05D006992 1.0e-95 354.0 269 70.3
Glyma.01G137000 Glycine max HOM05D005802 ORTHO05D006992 1.3e-95 353.6 271 67.5
Cfa011175 Carpinus fangiana HOM05D005802 ORTHO05D006992 2.3e-95 352.8 260 68.1
DCAR_025098 Daucus carota HOM05D005802 ORTHO05D006992 5.1e-95 351.7 263 70.3
C08p35600 Brassica napus HOM05D005802 ORTHO05D006992 1.1e-94 350.5 273 67.8
CSS0000774 Camellia sinensis var. sinensis HOM05D005802 ORTHO05D006992 2.5e-94 349.4 270 67.8
THA.LOC104802463 Tarenaya hassleriana HOM05D005802 ORTHO05D006992 3.3e-94 349.0 274 69.7
FAN06G1875 Fragaria x ananassa HOM05D005802 ORTHO05D006992 4.3e-94 348.6 286 64.0
Phvul.010G077700 Phaseolus vulgaris HOM05D005802 ORTHO05D006992 4.3e-94 348.6 271 66.4
A09p52850 Brassica napus HOM05D005802 ORTHO05D006992 1.3e-93 347.1 273 67.4
FAN06G3617 Fragaria x ananassa HOM05D005802 ORTHO05D006992 3.7e-93 345.5 276 65.9
FAN10G1300 Fragaria x ananassa HOM05D005802 ORTHO05D006992 3.7e-93 345.5 276 66.7
AT3G60660 Arabidopsis thaliana HOM05D005802 ORTHO05D006992 6.2e-93 344.7 274 67.2
RcHm_v2.0_Chr5g0028911 Rosa chinensis HOM05D005802 ORTHO05D006992 6.2e-93 344.7 275 65.8
BcaC07g40584 Brassica carinata HOM05D005802 ORTHO05D006992 1.1e-92 344.0 276 67.4
Aa31LG10G14950 Aethionema arabicum HOM05D005802 ORTHO05D006992 1.4e-92 343.6 274 66.8
CAN.G106.25 Capsicum annuum HOM05D005802 ORTHO05D006992 1.4e-92 343.6 270 68.5
CARHR171060 Cardamine hirsuta HOM05D005802 ORTHO05D006992 9.0e-92 340.9 273 66.7
TPR.G5024 Trifolium pratense HOM05D005802 ORTHO05D006992 9.0e-92 340.9 271 66.4
MSTRG.17165 Avicennia marina HOM05D005802 ORTHO05D006992 1.2e-91 340.5 268 67.2
Thhalv10006164m.g Eutrema salsugineum HOM05D005802 ORTHO05D006992 1.2e-91 340.5 274 66.4
Sp5g02580 Schrenkiella parvula HOM05D005802 ORTHO05D006992 1.2e-91 340.5 273 65.2
AL5G42970 Arabidopsis lyrata HOM05D005802 ORTHO05D006992 2.0e-91 339.7 275 66.2
FAN10G3200 Fragaria x ananassa HOM05D005802 ORTHO05D006992 2.6e-91 339.3 276 65.6
Peaxi162Scf01052g00014 Petunia axillaris HOM05D005802 ORTHO05D006992 5.8e-91 338.2 270 66.7
FAN03G1851 Fragaria x ananassa HOM05D005802 ORTHO05D006992 1.7e-90 336.7 276 65.2
Lsat_1_v5_gn_4_44621 Lactuca sativa HOM05D005802 ORTHO05D006992 2.9e-90 335.9 271 64.2
arahy.Tifrunner.gnm1.ann1.GQKS8P Arachis hypogaea HOM05D005802 ORTHO05D006992 1.1e-89 334.0 303 61.1
Psat7g217800 Pisum sativum HOM05D005802 ORTHO05D006992 1.1e-89 334.0 272 64.0
FAN01G2984 Fragaria x ananassa HOM05D005802 ORTHO05D006992 1.9e-89 333.2 286 63.3
Medtr4g026180 Medicago truncatula HOM05D005802 ORTHO05D006992 1.9e-89 333.2 267 65.9
PGSC0003DMG400007022 Solanum tuberosum HOM05D005802 ORTHO05D006992 7.1e-89 331.3 270 65.9
Dinv44124 Davidia involucrata HOM05D005802 ORTHO05D006992 2.1e-88 329.7 261 67.8
Migut.B01600 Erythranthe guttata HOM05D005802 ORTHO05D006992 2.1e-88 329.7 268 64.9
HanXRQChr03g0088101 Helianthus annuus HOM05D005802 ORTHO05D006992 3.5e-88 328.9 273 63.0
Solyc05g050900.4 Solanum lycopersicum HOM05D005802 ORTHO05D006992 4.6e-88 328.6 270 65.2
Sed0027573 Sechium edule HOM05D005802 ORTHO05D006992 6.1e-88 328.2 270 63.3
Aqoxy7G00743 Aquilegia oxysepala HOM05D005802 ORTHO05D006992 1.3e-87 327.0 274 65.7
Sopen05g029380 Solanum pennellii HOM05D005802 ORTHO05D006992 1.8e-87 326.6 270 64.8
ClCG09G008930 Citrullus lanatus HOM05D005802 ORTHO05D006992 3.9e-87 325.5 273 63.4
ECA234G0875 Erigeron canadensis HOM05D005802 ORTHO05D006992 5.1e-87 325.1 265 62.6
FvH4_7g11150 Fragaria vesca HOM05D005802 ORTHO05D006992 1.9e-86 323.2 245 68.2
CsaV3_7G026130 Cucumis sativus L. HOM05D005802 ORTHO05D006992 4.3e-86 322.0 273 63.7
Carub.0005s2750 Capsella rubella HOM05D005802 ORTHO05D006992 7.4e-86 321.2 261 65.5
BraA09t40717Z Brassica rapa HOM05D005802 ORTHO05D006992 1.4e-84 317.0 338 54.4
Cc02_g24280 Coffea canephora HOM05D005802 ORTHO05D006992 4.1e-84 315.5 271 61.6
SalBow5G5068 Salvia bowleyana HOM05D005802 ORTHO05D006992 6.9e-84 314.7 268 61.9
VMungo0331G0187 Vigna mungo HOM05D005802 ORTHO05D006992 1.3e-82 310.5 246 65.9
Carub.0005s2739 Capsella rubella HOM05D005802 ORTHO05D006992 1.7e-82 310.1 265 64.5
Nitab4.5_0001329g0060 Nicotiana tabacum HOM05D005802 ORTHO05D006992 1.7e-82 310.1 260 62.7
vmacro21028 Vaccinium macrocarpon HOM05D005802 ORTHO05D006992 5.5e-81 305.1 272 62.5
Os07g0484500 Oryza sativa ssp. japonica HOM05D005802 ORTHO05D006992 3.7e-77 292.4 273 57.1
Actinidia28320 Actinidia chinensis HOM05D005802 ORTHO05D006992 2.4e-76 289.7 219 68.0
ATR1153G072 Amborella trichopoda HOM05D005802 ORTHO05D006992 4.1e-76 288.9 267 59.2
EL10Ac1g00841 Beta vulgaris HOM05D005802 ORTHO05D006992 1.0e-74 284.3 270 58.9
SGA_v2.0_scaffold153G36973 Striga asiatica HOM05D005802 ORTHO05D006992 1.6e-72 276.9 245 60.0
Zm00001eb321530 Zea mays HOM05D005802 ORTHO05D006992 2.1e-72 276.6 261 55.9
Nitab4.5_0005050g0030 Nicotiana tabacum HOM05D005802 ORTHO05D006992 7.4e-70 268.1 268 56.0
Ca_02431_v3 Cicer arietinum L. HOM05D005802 ORTHO05D006992 1.3e-69 267.3 254 57.9
CDE04G3422 Ceratophyllum demersum HOM05D005802 ORTHO05D006992 6.3e-69 265.0 287 52.6
TAR375G0251 Trochodendron aralioides HOM05D005802 ORTHO05D006992 5.3e-68 261.9 189 67.7
Lj7A534G38 Lonicera japonica HOM05D000908 ORTHO05D000789 2.5e-65 253.1 273 53.8
Lalb_Chr12g0208021 Lupinus albus HOM05D005802 ORTHO05D006992 1.4e-63 247.3 181 68.0
Oeu051925.1 Olea europaea HOM05D005802 ORTHO05D006992 3.3e-62 242.7 249 57.4
Mapoly0010s0189 Marchantia polymorpha HOM05D005802 ORTHO05D006992 1.7e-58 230.3 266 48.1
RcHm_v2.0_Chr1g0349231 Rosa chinensis HOM05D005802 ORTHO05D006992 4.0e-55 219.2 194 59.8
Pp3c6_12030 Physcomitrium patens HOM05D005802 ORTHO05D006992 4.4e-54 215.7 277 44.8
MELO3C021033.2 Cucumis melo HOM05D005802 ORTHO05D006992 9.1e-52 208.0 212 55.2
Oeu051926.1 Olea europaea HOM05D005802 ORTHO05D006992 1.0e-50 204.5 147 68.7
AagrBONN_evm.TU.Sc2ySwM_368.1567 Anthoceros agrestis HOM05D005802 ORTHO05D006992 6.5e-50 201.8 266 42.9
SMO347G0664 Selaginella moellendorffii HOM05D005802 ORTHO05D006992 9.8e-46 188.0 229 43.2
RcHm_v2.0_Chr1g0349201 Rosa chinensis HOM05D005802 ORTHO05D006992 1.8e-44 183.7 345 38.0
Ah.05g173870 Amaranthus hybridus HOM05D005802 ORTHO05D006992 2.6e-38 163.3 140 64.3
Ah.05g173880 Amaranthus hybridus HOM05D005802 ORTHO05D006992 5.7e-38 162.2 108 78.7
Actinidia33479 Actinidia chinensis HOM05D005802 ORTHO05D006992 3.2e-36 156.4 132 62.1
FAN03G0906 Fragaria x ananassa HOM05D005802 ORTHO05D006992 4.1e-36 156.0 115 73.9
FAN03G0348 Fragaria x ananassa HOM05D005802 ORTHO05D006992 1.2e-35 154.5 115 71.3
Oeu055514.1 Olea europaea HOM05D005802 ORTHO05D006992 2.0e-30 137.1 140 60.0
RcHm_v2.0_Chr1g0349251 Rosa chinensis HOM05D005802 ORTHO05D006992 7.5e-30 135.2 84 78.6
RcHm_v2.0_Chr1g0349241 Rosa chinensis HOM05D005802 ORTHO05D006992 1.7e-29 134.0 109 65.1
Glyma.03G031466 Glycine max HOM05D005802 ORTHO05D006992 2.9e-29 133.3 84 76.2
Cre16.g672500 Chlamydomonas reinhardtii HOM05D005802 ORTHO05D006992 2.0e-27 127.1 263 34.2
Cc00_g05160 Coffea canephora HOM05D005802 ORTHO05D006992 5.0e-26 122.5 109 63.3
SHI22578 Sapria himalayana HOM05D005802 ORTHO05D006992 1.5e-25 120.9 104 61.5
Hma1.2p1_0072F.1_g038280 Hydrangea macrophylla HOM05D005802 ORTHO05D006992 3.3e-25 119.8 109 59.6
SHI22577 Sapria himalayana HOM05D005802 ORTHO05D006992 3.3e-25 119.8 108 56.5
Cc00_g05150 Coffea canephora HOM05D005802 ORTHO05D006992 1.6e-24 117.5 111 60.4
RcHm_v2.0_Chr1g0349161 Rosa chinensis HOM05D005802 ORTHO05D006992 2.8e-24 116.7 152 46.7
CBR_g48776 Chara braunii HOM05D005802 ORTHO05D006992 1.1e-23 114.8 249 29.3
Lalb_Chr12g0208011 Lupinus albus HOM05D005802 ORTHO05D006992 1.5e-22 110.9 72 81.9
Oeu045806.1 Olea europaea HOM05D005802 ORTHO05D006992 4.4e-22 109.4 73 76.7
FAN10G4230 Fragaria x ananassa HOM05D005802 ORTHO05D006992 1.2e-19 101.3 56 82.1
C04p32020 Brassica napus HOM05D010895 ORTHO05D012939 7.8e-19 98.6 140 45.7
ECA240G2706 Erigeron canadensis HOM05D001255 ORTHO05D001246 1.3e-18 97.8 66 66.7
Dinv44127 Davidia involucrata HOM05D005802 ORTHO05D006992 5.1e-18 95.9 69 65.2
RcHm_v2.0_Chr1g0349171 Rosa chinensis HOM05D005802 ORTHO05D006992 8.6e-18 95.1 58 82.8
CARHR170760 Cardamine hirsuta HOM05D005802 ORTHO05D006992 3.3e-17 93.2 80 63.8
BolC4t24754H Brassica oleracea HOM05D005802 ORTHO05D006992 7.3e-17 92.0 103 53.4
Glyma.03G031532 Glycine max HOM05D005802 ORTHO05D006992 6.0e-11 72.4 80 53.8
SGA_v2.0_scaffold123G33454 Striga asiatica HOM05D000451 ORTHO05D000351 7.8e-11 72.0 104 41.3
Aa31sc27G90 Aethionema arabicum HOM05D005802 ORTHO05D006992 8.9e-07 58.5 68 47.1
FAN06G0568 Fragaria x ananassa HOM05D005802 ORTHO05D006992 2.0e-06 57.4 49 53.1
arahy.Tifrunner.gnm1.ann1.LXE9FZ Arachis hypogaea HOM05D005802 ORTHO05D006992 9.9e-06 55.1 34 70.6


User provided reference genes

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