Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc02g0002580 Simmondsia chinensis HOM05D006036 ORTHO05D007736 3.2e-127 458.4 222 100.0
CiPaw.01G261900 Carya illinoinensis HOM05D006036 ORTHO05D007736 3.9e-85 318.5 222 69.8
Hund17020 Selenicereus undatus HOM05D006036 ORTHO05D007736 5.1e-85 318.2 231 68.4
EL10Ac1g00899 Beta vulgaris HOM05D006036 ORTHO05D007736 8.8e-85 317.4 226 69.0
TWI14G1308 Tripterygium wilfordii HOM05D006036 ORTHO05D007736 2.2e-83 312.8 230 69.1
Thecc.01G376100 Theobroma cacao HOM05D006036 ORTHO05D007736 2.8e-83 312.4 226 69.0
AUR62013628 Chenopodium quinoa HOM05D006036 ORTHO05D007736 3.7e-83 312.0 227 67.4
Ah.16g109830 Amaranthus hybridus HOM05D006036 ORTHO05D007736 6.3e-83 311.2 227 67.8
Nn1g01232 Nelumbo nucifera HOM05D006036 ORTHO05D007736 8.2e-83 310.8 225 68.9
Oeu037915.1 Olea europaea HOM05D006036 ORTHO05D007736 8.2e-83 310.8 228 66.2
Cc02_g36690 Coffea canephora HOM05D006036 ORTHO05D007736 1.4e-82 310.1 210 71.0
Haze_16816 Corylus avellana HOM05D006036 ORTHO05D007736 1.8e-82 309.7 222 68.9
Cfa001720 Carpinus fangiana HOM05D006036 ORTHO05D007736 3.1e-82 308.9 222 68.9
Sed0014119 Sechium edule HOM05D006036 ORTHO05D007736 3.5e-81 305.4 227 66.5
Aqoxy7G00627 Aquilegia oxysepala HOM05D006036 ORTHO05D007736 5.9e-81 304.7 187 76.5
Glyma.01G142900 Glycine max HOM05D006036 ORTHO05D007736 7.7e-81 304.3 194 74.7
MSTRG.4890 Avicennia marina HOM05D006036 ORTHO05D007736 2.2e-80 302.8 228 64.9
Sed0006891 Sechium edule HOM05D006036 ORTHO05D007736 2.2e-80 302.8 224 66.5
QL08p052466 Quercus lobata HOM05D006036 ORTHO05D007736 5.0e-80 301.6 226 67.7
CsaV3_6G006160 Cucumis sativus L. HOM05D006036 ORTHO05D007736 8.5e-80 300.8 226 65.9
Glyma.14G070200 Glycine max HOM05D006036 ORTHO05D007736 8.5e-80 300.8 194 73.7
Glyma.03G023900 Glycine max HOM05D006036 ORTHO05D007736 1.1e-79 300.4 194 73.7
Gohir.A08G134500 Gossypium hirsutum HOM05D006036 ORTHO05D007736 2.5e-79 299.3 222 66.7
HanXRQChr16g0520241 Helianthus annuus HOM05D006036 ORTHO05D007736 2.5e-79 299.3 228 66.2
SalBow5G3583 Salvia bowleyana HOM05D006036 ORTHO05D007736 2.5e-79 299.3 187 74.3
Duzib133G1287 Durio zibethinus HOM05D006036 ORTHO05D007736 3.2e-79 298.9 227 67.4
MBI04_g35276_MAGBIO Magnolia biondii HOM05D006036 ORTHO05D007736 3.2e-79 298.9 217 69.6
Prupe.2G145700 Prunus persica HOM05D006036 ORTHO05D007736 3.2e-79 298.9 223 67.3
Cpa.g.sc349.4 Carica papaya HOM05D006036 ORTHO05D007736 7.2e-79 297.7 224 67.9
Ca_03013_v3 Cicer arietinum L. HOM05D006036 ORTHO05D007736 9.4e-79 297.4 212 67.9
Psat7g231640 Pisum sativum HOM05D006036 ORTHO05D007736 1.2e-78 297.0 187 74.3
Dinv32378 Davidia involucrata HOM05D006036 ORTHO05D007736 1.6e-78 296.6 169 81.7
FAN03G0372 Fragaria x ananassa HOM05D006036 ORTHO05D007736 2.1e-78 296.2 223 65.0
SalBow5G0783 Salvia bowleyana HOM05D006036 ORTHO05D007736 2.1e-78 296.2 187 73.8
FAN10G3538 Fragaria x ananassa HOM05D006036 ORTHO05D007736 4.7e-78 295.0 228 65.8
Lsat_1_v5_gn_4_40940 Lactuca sativa HOM05D006036 ORTHO05D007736 4.7e-78 295.0 176 78.4
Medtr4g023550 Medicago truncatula HOM05D006036 ORTHO05D007736 4.7e-78 295.0 185 74.1
RcHm_v2.0_Chr1g0350591 Rosa chinensis HOM05D006036 ORTHO05D007736 4.7e-78 295.0 187 74.9
unitig_8.g4983 Utricularia gibba HOM05D006036 ORTHO05D007736 8.0e-78 294.3 177 76.8
Eucgr.E01417 Eucalyptus grandis HOM05D006036 ORTHO05D007736 1.0e-77 293.9 191 71.7
Phvul.010G084400 Phaseolus vulgaris HOM05D006036 ORTHO05D007736 1.0e-77 293.9 194 72.2
FAN01G0425 Fragaria x ananassa HOM05D006036 ORTHO05D007736 3.0e-77 292.4 222 63.5
Lj3g0008791 Lotus japonicus HOM05D006036 ORTHO05D007736 4.0e-77 292.0 225 63.6
PGR042G0035 Punica granatum HOM05D006036 ORTHO05D007736 6.7e-77 291.2 231 64.1
Solyc01g091360.4 Solanum lycopersicum HOM05D006036 ORTHO05D007736 6.7e-77 291.2 190 73.2
Sopen01g037100 Solanum pennellii HOM05D006036 ORTHO05D007736 6.7e-77 291.2 190 72.6
FvH4_7g11910 Fragaria vesca HOM05D006036 ORTHO05D007736 1.5e-76 290.0 228 65.8
Lalb_Chr07g0189801 Lupinus albus HOM05D006036 ORTHO05D007736 1.5e-76 290.0 205 67.3
ECA234G4399 Erigeron canadensis HOM05D006036 ORTHO05D007736 2.0e-76 289.7 187 71.1
Actinidia12688 Actinidia chinensis HOM05D006036 ORTHO05D007736 4.4e-76 288.5 222 67.1
CDE02G2016 Ceratophyllum demersum HOM05D006036 ORTHO05D007736 4.4e-76 288.5 193 70.5
TPR.G9852 Trifolium pratense HOM05D006036 ORTHO05D007736 4.4e-76 288.5 179 74.9
PGSC0003DMG400012774 Solanum tuberosum HOM05D006036 ORTHO05D007736 5.7e-76 288.1 189 72.5
Glyma.08G286100 Glycine max HOM05D006036 ORTHO05D007736 1.3e-75 287.0 178 76.4
CANSAT56G2189 Cannabis sativa HOM05D006036 ORTHO05D007736 2.2e-75 286.2 223 65.5
DCAR_031531 Daucus carota HOM05D006036 ORTHO05D007736 2.2e-75 286.2 173 77.5
Manes.05G045200 Manihot esculenta HOM05D006036 ORTHO05D007736 3.7e-75 285.4 229 65.1
Rhsim01G0147400 Rhododendron simsii HOM05D006036 ORTHO05D007736 8.2e-75 284.3 232 64.7
Lj9A569G50 Lonicera japonica HOM05D006036 ORTHO05D007736 1.8e-74 283.1 206 65.5
Sabra02G0117300 Salix brachista HOM05D006036 ORTHO05D007736 1.8e-74 283.1 216 65.7
GSVIVG01027612001 Vitis vinifera HOM05D006036 ORTHO05D007736 2.4e-74 282.7 224 64.7
arahy.Tifrunner.gnm1.ann1.B3VI1A Arachis hypogaea HOM05D006036 ORTHO05D007736 4.1e-74 282.0 178 74.7
Sabra02G0115600 Salix brachista HOM05D006036 ORTHO05D007736 5.3e-74 281.6 216 65.3
MD02G1204100 Malus domestica HOM05D006036 ORTHO05D007736 3.5e-73 278.9 229 62.9
Potri.002G148400 Populus trichocarpa HOM05D006036 ORTHO05D007736 7.7e-73 277.7 200 66.5
AL5G43130 Arabidopsis lyrata HOM05D006036 ORTHO05D007736 1.0e-72 277.3 224 64.3
SEGI_01363 Sequoiadendron giganteum HOM05D006036 ORTHO05D007736 2.2e-72 276.2 182 68.1
Carub.0005s2756 Capsella rubella HOM05D006036 ORTHO05D007736 5.0e-72 275.0 225 66.7
BolC8t51167H Brassica oleracea HOM05D006036 ORTHO05D007736 2.5e-71 272.7 226 63.7
AUR62004220 Chenopodium quinoa HOM05D006036 ORTHO05D007736 4.2e-71 271.9 157 79.0
BcaC07g40602 Brassica carinata HOM05D006036 ORTHO05D007736 5.5e-71 271.6 226 63.3
Sp5g02440 Schrenkiella parvula HOM05D006036 ORTHO05D007736 7.2e-71 271.2 222 64.0
Atru.chr5.310 Acer truncatum HOM05D006036 ORTHO05D007736 9.4e-71 270.8 197 68.5
CARHR171200 Cardamine hirsuta HOM05D006036 ORTHO05D007736 9.4e-71 270.8 226 64.6
C08p35770 Brassica napus HOM05D006036 ORTHO05D007736 1.2e-70 270.4 223 65.0
Zm00001eb210410 Zea mays HOM05D006036 ORTHO05D007736 1.2e-70 270.4 181 66.3
A09p53070 Brassica napus HOM05D006036 ORTHO05D007736 2.1e-70 269.6 223 64.6
THA.LOC104802443 Tarenaya hassleriana HOM05D006036 ORTHO05D007736 2.1e-70 269.6 229 64.2
Aa31LG10G15050 Aethionema arabicum HOM05D006036 ORTHO05D007736 2.7e-70 269.2 222 63.5
AT3G60810 Arabidopsis thaliana HOM05D006036 ORTHO05D007736 2.7e-70 269.2 222 64.0
BcaC07g42642 Brassica carinata HOM05D006036 ORTHO05D007736 3.6e-70 268.9 224 62.9
ATR0810G113 Amborella trichopoda HOM05D006036 ORTHO05D007736 6.1e-70 268.1 177 70.6
Thhalv10006234m.g Eutrema salsugineum HOM05D006036 ORTHO05D007736 2.3e-69 266.2 222 63.1
Medtr7g074920 Medicago truncatula HOM05D006036 ORTHO05D007736 4.0e-69 265.4 202 61.4
CSS0011162 Camellia sinensis var. sinensis HOM05D006036 ORTHO05D007736 1.3e-67 260.4 168 75.0
CSS0022013 Camellia sinensis var. sinensis HOM05D006036 ORTHO05D007736 1.3e-67 260.4 168 75.0
BraA09t40733Z Brassica rapa HOM05D006036 ORTHO05D007736 2.2e-67 259.6 222 62.6
Os03g0858700 Oryza sativa ssp. japonica HOM05D006036 ORTHO05D007736 8.3e-67 257.7 179 65.4
FAN10G0738 Fragaria x ananassa HOM05D006036 ORTHO05D007736 1.6e-65 253.4 158 74.7
Mapoly0007s0216 Marchantia polymorpha HOM05D006036 ORTHO05D007736 1.6e-65 253.4 181 63.0
arahy.Tifrunner.gnm1.ann1.Y8TVDJ Arachis hypogaea HOM05D006036 ORTHO05D007736 7.7e-65 251.1 156 75.6
Ciclev10022362m.g Citrus clementina HOM05D006036 ORTHO05D007736 1.7e-64 250.0 156 76.3
Nitab4.5_0005372g0020 Nicotiana tabacum HOM05D006036 ORTHO05D007736 2.2e-64 249.6 233 57.1
vmacro21009 Vaccinium macrocarpon HOM05D006036 ORTHO05D007736 2.9e-64 249.2 162 74.7
Pp3c23_9860 Physcomitrium patens HOM05D006036 ORTHO05D007736 6.5e-64 248.1 181 63.5
PSO782G0421 Papaver somniferum HOM05D006036 ORTHO05D007736 3.2e-63 245.7 187 64.7
AagrBONN_evm.TU.Sc2ySwM_117.1558 Anthoceros agrestis HOM05D006036 ORTHO05D007736 4.2e-63 245.4 169 66.9
PSO478G2400 Papaver somniferum HOM05D006036 ORTHO05D007736 1.6e-62 243.4 231 56.3
vmacro21008 Vaccinium macrocarpon HOM05D006036 ORTHO05D007736 6.1e-62 241.5 155 74.2
VMungo0251G0926 Vigna mungo HOM05D006036 ORTHO05D007736 2.6e-60 236.1 193 62.7
SMO143G0045 Selaginella moellendorffii HOM05D006036 ORTHO05D007736 1.1e-58 230.7 151 67.5
Gohir.D08G155400 Gossypium hirsutum HOM05D006036 ORTHO05D007736 4.5e-57 225.3 183 62.3
Hma1.2p1_1122F.1_g259290 Hydrangea macrophylla HOM05D006036 ORTHO05D007736 1.3e-56 223.8 174 64.9
VMungo0331G0186 Vigna mungo HOM05D006036 ORTHO05D007736 3.8e-56 222.2 236 52.1
SGA_v2.0_scaffold153G37014 Striga asiatica HOM05D006036 ORTHO05D001464 1.2e-54 217.2 171 62.0
ClCG06G000370 Citrullus lanatus HOM05D006036 ORTHO05D007736 8.3e-51 204.5 193 54.9
Cre11.g468750 Chlamydomonas reinhardtii HOM05D006036 ORTHO05D007736 1.2e-49 200.7 193 49.2
Nitab4.5_0000457g0290 Nicotiana tabacum HOM05D006036 ORTHO05D007736 5.0e-48 195.3 214 52.3
COL.COLO4_12549 Corchorus olitorius HOM05D006036 ORTHO05D007736 1.6e-46 190.3 170 59.4
MELO3C035247.2 Cucumis melo HOM05D006036 ORTHO05D007736 2.3e-45 186.4 113 75.2
Peaxi162Scf00021g01720 Petunia axillaris HOM05D006036 ORTHO05D007736 2.0e-41 173.3 113 73.5
CAN.G388.12 Capsicum annuum HOM05D006036 ORTHO05D007736 1.9e-39 166.8 111 70.3
Glyma.09G269100 Glycine max HOM05D006036 ORTHO05D007736 3.6e-38 162.5 126 62.7
FAN06G1700 Fragaria x ananassa HOM05D006036 ORTHO05D007736 3.1e-37 159.5 95 78.9
Migut.N01635 Erythranthe guttata HOM05D006036 ORTHO05D007736 9.8e-36 154.5 139 59.0
Lalb_Chr03g0039561 Lupinus albus HOM05D006036 ORTHO05D007736 1.1e-34 151.0 128 57.8
Ca_07819_v3 Cicer arietinum L. HOM05D006036 ORTHO05D007736 6.0e-33 145.2 95 70.5
Ca_19909_v3 Cicer arietinum L. HOM05D006036 ORTHO05D007736 5.1e-32 142.1 101 62.4
MCO13G087 Micromonas commoda HOM05D006036 ORTHO05D007736 4.3e-31 139.0 159 43.4
FAN06G2896 Fragaria x ananassa HOM05D006036 ORTHO05D007736 3.6e-30 136.0 76 81.6
CBR_g54966 Chara braunii HOM05D006036 ORTHO05D007736 2.0e-28 130.2 83 69.9
MELO3C034959.2 Cucumis melo HOM05D006036 ORTHO05D007736 3.2e-26 122.9 75 76.0
Ciclev10033315m.g Citrus clementina HOM05D006036 ORTHO05D007736 4.1e-26 122.5 142 50.7
Gorai.007G091200 Gossypium raimondii HOM05D001611 ORTHO05D001464 2.5e-23 113.2 68 75.0
Gohir.D11G085366 Gossypium hirsutum HOM05D001611 ORTHO05D001464 3.6e-22 109.4 68 73.5
Lalb_Chr03g0039551 Lupinus albus HOM05D006036 ORTHO05D007736 6.9e-21 105.1 80 63.8
Psat3g116040 Pisum sativum HOM05D006036 ORTHO05D007736 8.9e-21 104.8 77 62.3
Lj1g0011795 Lotus japonicus HOM05D006036 ORTHO05D007736 5.4e-18 95.5 54 79.6
arahy.Tifrunner.gnm1.ann1.WD24C8 Arachis hypogaea HOM05D006036 ORTHO05D007736 1.5e-15 87.4 68 58.8
arahy.Tifrunner.gnm1.ann1.BW32E7 Arachis hypogaea HOM05D006036 ORTHO05D000587 3.4e-12 76.3 59 59.3
Gorai.004G161600 Gossypium raimondii HOM05D006036 ORTHO05D007736 3.4e-12 76.3 74 54.1


User provided reference genes

Program Settings