Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc02g0001910 Simmondsia chinensis HOM05D003656 ORTHO05D004211 1.1e-25 119.8 90 100.0
CiPaw.09G178500 Carya illinoinensis HOM05D003656 ORTHO05D004211 3.9e-15 84.7 90 52.2
CiPaw.10G136100 Carya illinoinensis HOM05D003656 ORTHO05D004211 1.5e-14 82.8 90 50.0
TAR623G1327 Trochodendron aralioides HOM05D003656 ORTHO05D004211 4.3e-14 81.3 90 51.1
GSVIVG01025648001 Vitis vinifera HOM05D003656 ORTHO05D004211 4.3e-14 81.3 90 50.0
Ciclev10013218m.g Citrus clementina HOM05D003656 ORTHO05D004211 1.6e-13 79.3 90 51.1
GSVIVG01025155001 Vitis vinifera HOM05D003656 ORTHO05D004211 2.8e-13 78.6 90 58.9
Cfa017524 Carpinus fangiana HOM05D003656 ORTHO05D004211 4.7e-13 77.8 90 47.8
Haze_20625 Corylus avellana HOM05D003656 ORTHO05D004211 4.7e-13 77.8 90 47.8
Haze_20628 Corylus avellana HOM05D003656 ORTHO05D004211 4.7e-13 77.8 90 47.8
Nn2g13031 Nelumbo nucifera HOM05D003656 ORTHO05D004211 4.7e-13 77.8 90 52.2
Glyma.03G179000 Glycine max HOM05D003656 ORTHO05D004211 6.2e-13 77.4 90 48.9
Glyma.19G179700 Glycine max HOM05D003656 ORTHO05D004211 1.1e-12 76.6 90 58.9
CsaV3_6G039400 Cucumis sativus L. HOM05D003656 ORTHO05D004211 1.4e-12 76.3 90 48.9
Lalb_Chr02g0156271 Lupinus albus HOM05D003656 ORTHO05D004211 1.4e-12 76.3 89 48.3
Manes.08G004601 Manihot esculenta HOM05D003656 ORTHO05D004211 3.1e-12 75.1 90 46.7
Lj1g0024655 Lotus japonicus HOM05D003656 ORTHO05D004211 5.3e-12 74.3 90 47.8
Duzib128G1560 Durio zibethinus HOM05D003656 ORTHO05D004211 6.9e-12 73.9 91 47.3
Nn2g10711 Nelumbo nucifera HOM05D003656 ORTHO05D004211 1.2e-11 73.2 90 47.8
Dinv37267 Davidia involucrata HOM05D003656 ORTHO05D004211 2.0e-11 72.4 90 46.7
Hund20195 Selenicereus undatus HOM05D003656 ORTHO05D004211 4.4e-11 71.2 90 44.4
CSS0043834 Camellia sinensis var. sinensis HOM05D003656 ORTHO05D004211 5.8e-11 70.9 90 46.7
Hma1.2p1_0111F.1_g054020 Hydrangea macrophylla HOM05D003656 ORTHO05D004211 9.9e-11 70.1 90 45.6
Manes.09G076337 Manihot esculenta HOM05D003656 ORTHO05D004211 1.7e-10 69.3 90 42.2
Atru.chr8.1893 Acer truncatum HOM05D003656 ORTHO05D004211 2.2e-10 68.9 78 71.8
Actinidia05263 Actinidia chinensis HOM05D000190 ORTHO05D000113 2.2e-10 68.9 90 45.6
Cpa.g.sc638.2 Carica papaya HOM05D003656 ORTHO05D004211 2.2e-10 68.9 91 64.8
Lalb_Chr21g0314731 Lupinus albus HOM05D003656 ORTHO05D004211 2.2e-10 68.9 83 71.1
Potri.016G087400 Populus trichocarpa HOM05D003656 ORTHO05D004211 2.2e-10 68.9 90 62.2
Actinidia13096 Actinidia chinensis HOM05D003656 ORTHO05D004211 2.9e-10 68.6 90 45.6
CSS0018024 Camellia sinensis var. sinensis HOM05D003656 ORTHO05D004211 3.8e-10 68.2 90 44.4
Potri.006G130200 Populus trichocarpa HOM05D003656 ORTHO05D004211 3.8e-10 68.2 90 43.3
QL04p031290 Quercus lobata HOM05D003656 ORTHO05D004211 3.8e-10 68.2 89 46.1
QL07p045029 Quercus lobata HOM05D003656 ORTHO05D004211 3.8e-10 68.2 89 46.1
Duzib106G1222 Durio zibethinus HOM05D003656 ORTHO05D004211 4.9e-10 67.8 90 47.8
SalBow5G0952 Salvia bowleyana HOM05D003656 ORTHO05D004211 4.9e-10 67.8 89 61.8
AUR62025008 Chenopodium quinoa HOM05D003656 ORTHO05D004211 6.4e-10 67.4 69 56.5
Nitab4.5_0008568g0020 Nicotiana tabacum HOM05D003656 ORTHO05D004211 1.1e-09 66.6 85 44.7
TAR633G2048 Trochodendron aralioides HOM05D003656 ORTHO05D004211 1.1e-09 66.6 69 55.1
Gorai.009G419300 Gossypium raimondii HOM05D003656 ORTHO05D004211 1.4e-09 66.2 90 46.7
Phvul.001G175700 Phaseolus vulgaris HOM05D003656 ORTHO05D004211 1.4e-09 66.2 90 50.0
MSTRG.5727 Avicennia marina HOM05D003656 ORTHO05D004211 1.9e-09 65.9 90 41.1
EL10Ac9g22481 Beta vulgaris HOM05D003656 ORTHO05D004211 1.9e-09 65.9 69 65.2
Gohir.D04G114700 Gossypium hirsutum HOM05D003656 ORTHO05D004211 1.9e-09 65.9 90 46.7
Nitab4.5_0003871g0010 Nicotiana tabacum HOM05D003656 ORTHO05D004211 1.9e-09 65.9 85 44.7
SalBow5G4464 Salvia bowleyana HOM05D003656 ORTHO05D004211 2.4e-09 65.5 89 60.7
Dinv32777 Davidia involucrata HOM05D003656 ORTHO05D004211 3.2e-09 65.1 91 44.0
Gohir.A04G075600 Gossypium hirsutum HOM05D003656 ORTHO05D004211 3.2e-09 65.1 90 45.6
Gohir.A09G151300 Gossypium hirsutum HOM05D003656 ORTHO05D004211 3.2e-09 65.1 91 44.0
Eucgr.A01168 Eucalyptus grandis HOM05D003656 ORTHO05D004211 4.2e-09 64.7 90 45.6
Ah.01g015060 Amaranthus hybridus HOM05D003656 ORTHO05D004211 5.4e-09 64.3 71 49.3
Glyma.13G138200 Glycine max HOM05D003656 ORTHO05D004211 5.4e-09 64.3 90 45.6
Gohir.D09G146900 Gossypium hirsutum HOM05D003656 ORTHO05D004211 5.4e-09 64.3 91 44.0
Gorai.006G168100 Gossypium raimondii HOM05D003656 ORTHO05D004211 5.4e-09 64.3 91 44.0
Prupe.6G239600 Prunus persica HOM05D003656 ORTHO05D004211 5.4e-09 64.3 90 48.9
Phvul.007G107500 Phaseolus vulgaris HOM05D003656 ORTHO05D004211 7.1e-09 63.9 90 43.3
TPR.G18279 Trifolium pratense HOM05D003656 ORTHO05D004211 7.1e-09 63.9 90 44.4
arahy.Tifrunner.gnm1.ann1.5V2EV5 Arachis hypogaea HOM05D003656 ORTHO05D004211 9.3e-09 63.5 89 42.7
arahy.Tifrunner.gnm1.ann1.FC0UQU Arachis hypogaea HOM05D003656 ORTHO05D004211 9.3e-09 63.5 89 42.7
Sc06g0010000 Simmondsia chinensis HOM05D003656 ORTHO05D004211 9.3e-09 63.5 81 53.1
TAR369G0518 Trochodendron aralioides HOM05D003656 ORTHO05D004211 9.3e-09 63.5 69 52.2
TWI74G0472 Tripterygium wilfordii HOM05D003656 ORTHO05D004211 1.2e-08 63.2 90 42.2
Duzib093G1390 Durio zibethinus HOM05D003656 ORTHO05D004211 1.6e-08 62.8 90 42.2
Oeu014968.1 Olea europaea HOM05D003656 ORTHO05D000397 1.6e-08 62.8 76 53.9
Solyc09g007500.3 Solanum lycopersicum HOM05D003656 ORTHO05D004211 1.6e-08 62.8 75 52.0
Sopen09g002370 Solanum pennellii HOM05D003656 ORTHO05D004211 1.6e-08 62.8 75 52.0
Glyma.10G050700 Glycine max HOM05D003656 ORTHO05D004211 2.1e-08 62.4 90 61.1
PGSC0003DMG400001772 Solanum tuberosum HOM05D003656 ORTHO05D004211 2.1e-08 62.4 75 52.0
HanXRQChr02g0052001 Helianthus annuus HOM05D003656 ORTHO05D004211 2.7e-08 62.0 78 50.0
Thecc.05G056100 Theobroma cacao HOM05D003656 ORTHO05D004211 2.7e-08 62.0 75 50.7
Migut.J00425 Erythranthe guttata HOM05D003656 ORTHO05D004211 3.5e-08 61.6 75 68.0
Gohir.D01G205000 Gossypium hirsutum HOM05D003656 ORTHO05D004211 3.5e-08 61.6 90 41.1
Gorai.002G249300 Gossypium raimondii HOM05D003656 ORTHO05D004211 3.5e-08 61.6 90 41.1
Hma1.2p1_0614F.1_g189580 Hydrangea macrophylla HOM05D003656 ORTHO05D004211 4.6e-08 61.2 70 48.6
Lalb_Chr20g0112831 Lupinus albus HOM05D003656 ORTHO05D004211 6.0e-08 60.8 72 77.8
SEGI_21131 Sequoiadendron giganteum HOM05D003656 ORTHO05D004211 6.0e-08 60.8 91 45.1
MD12G1121800 Malus domestica HOM05D003656 ORTHO05D004211 7.8e-08 60.5 75 50.7
Nitab4.5_0000669g0100 Nicotiana tabacum HOM05D003656 ORTHO05D004211 7.8e-08 60.5 55 58.2
Gohir.A01G216200 Gossypium hirsutum HOM05D003656 ORTHO05D004211 1.0e-07 60.1 75 45.3
ClCG04G008890 Citrullus lanatus HOM05D003656 ORTHO05D004211 1.3e-07 59.7 69 49.3
CAN.G933.3 Capsicum annuum HOM05D003656 ORTHO05D004211 1.7e-07 59.3 68 50.0
Cc06_g03710 Coffea canephora HOM05D003656 ORTHO05D004211 1.7e-07 59.3 90 43.3
Sopen10g035430 Solanum pennellii HOM05D003656 ORTHO05D004211 1.7e-07 59.3 68 50.0
Lsat_1_v5_gn_6_30301 Lactuca sativa HOM05D003656 ORTHO05D004211 2.3e-07 58.9 66 54.5
Medtr7g100880 Medicago truncatula HOM05D003656 ORTHO05D004211 2.3e-07 58.9 90 40.0
TWI53G0682 Tripterygium wilfordii HOM05D003656 ORTHO05D004211 2.3e-07 58.9 90 43.3
ClCG10G020440 Citrullus lanatus HOM05D003656 ORTHO05D004211 3.0e-07 58.5 69 49.3
FvH4_6g15550 Fragaria vesca HOM05D003656 ORTHO05D004211 3.0e-07 58.5 67 65.7
FAN02G2121 Fragaria x ananassa HOM05D003656 ORTHO05D004211 3.0e-07 58.5 67 65.7
FAN09G1094 Fragaria x ananassa HOM05D003656 ORTHO05D004211 3.0e-07 58.5 67 65.7
FAN14G0104 Fragaria x ananassa HOM05D003656 ORTHO05D004211 3.0e-07 58.5 67 65.7
HanXRQChr13g0399601 Helianthus annuus HOM05D003656 ORTHO05D004211 3.0e-07 58.5 68 52.9
Lalb_Chr01g0018961 Lupinus albus HOM05D003656 ORTHO05D004211 3.0e-07 58.5 69 59.4
Nitab4.5_0000754g0160 Nicotiana tabacum HOM05D003656 ORTHO05D004211 3.0e-07 58.5 67 49.3
Nitab4.5_0003973g0060 Nicotiana tabacum HOM05D003656 ORTHO05D004211 3.0e-07 58.5 67 49.3
PSO384G0375 Papaver somniferum HOM05D003656 ORTHO05D004211 3.0e-07 58.5 67 52.2
CsaV3_3G035680 Cucumis sativus L. HOM05D000026 ORTHO05D001292 3.9e-07 58.2 69 47.8
Lalb_Chr25g0289191 Lupinus albus HOM05D003656 ORTHO05D004211 3.9e-07 58.2 67 50.7
Nitab4.5_0006156g0010 Nicotiana tabacum HOM05D003656 ORTHO05D004211 3.9e-07 58.2 68 50.0
PGSC0003DMG401017590 Solanum tuberosum HOM05D003656 ORTHO05D004211 3.9e-07 58.2 68 48.5
Migut.L01670 Erythranthe guttata HOM05D003656 ORTHO05D004211 5.1e-07 57.8 79 48.1
FAN05G2348 Fragaria x ananassa HOM05D003656 ORTHO05D004211 5.1e-07 57.8 67 65.7
Oeu060097.1 Olea europaea HOM05D003656 ORTHO05D004211 5.1e-07 57.8 67 52.2
Peaxi162Scf00005g00388 Petunia axillaris HOM05D003656 ORTHO05D004211 5.1e-07 57.8 87 39.1
Peaxi162Scf00488g00093 Petunia axillaris HOM05D003656 ORTHO05D004211 5.1e-07 57.8 68 47.1
MELO3C009327.2 Cucumis melo HOM05D003656 ORTHO05D004211 6.6e-07 57.4 69 49.3
ECA233G0967 Erigeron canadensis HOM05D003656 ORTHO05D004211 6.6e-07 57.4 65 53.8
MD04G1102100 Malus domestica HOM05D003656 ORTHO05D004211 6.6e-07 57.4 75 50.7
MBI02_g25821_MAGBIO Magnolia biondii HOM05D003656 ORTHO05D004211 8.7e-07 57.0 75 50.7
DCAR_017715 Daucus carota HOM05D003656 ORTHO05D004211 1.1e-06 56.6 67 68.7
Lj5g0004266 Lotus japonicus HOM05D003656 ORTHO05D004211 1.1e-06 56.6 75 44.0
Sed0001939 Sechium edule HOM05D003656 ORTHO05D004211 1.5e-06 56.2 69 49.3
Psat0s1011g0080 Pisum sativum HOM05D003656 ORTHO05D004211 1.9e-06 55.8 90 42.2
Aqoxy4G03232 Aquilegia oxysepala HOM05D003656 ORTHO05D004211 2.5e-06 55.5 66 62.1
Medtr7g100890 Medicago truncatula HOM05D001219 ORTHO05D001017 2.5e-06 55.5 82 40.2
DCAR_014972 Daucus carota HOM05D003656 ORTHO05D004211 3.3e-06 55.1 67 68.7
Peaxi162Scf00472g00033 Petunia axillaris HOM05D003656 ORTHO05D004211 3.3e-06 55.1 90 58.9
RcHm_v2.0_Chr3g0469111 Rosa chinensis HOM05D003656 ORTHO05D004211 3.3e-06 55.1 90 53.3
Aa31LG10G8550 Aethionema arabicum HOM05D003656 ORTHO05D004211 4.3e-06 54.7 65 72.3
Aa31LG3G2170 Aethionema arabicum HOM05D003656 ORTHO05D004211 7.3e-06 53.9 67 59.7
AT3G09735 Arabidopsis thaliana HOM05D003656 ORTHO05D004211 7.3e-06 53.9 66 62.1
SalBow3G0799 Salvia bowleyana HOM05D003656 ORTHO05D004211 7.3e-06 53.9 65 55.4
TPR.G18268 Trifolium pratense HOM05D003656 ORTHO05D004211 9.6e-06 53.5 64 50.0


User provided reference genes

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