Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc02g0001720 Simmondsia chinensis HOM05D004355 ORTHO05D005228 1.6e-64 249.2 123 100.0
Sc02g0001740 Simmondsia chinensis HOM05D004355 ORTHO05D005228 9.0e-39 163.7 97 83.5
AUR62039881 Chenopodium quinoa HOM05D004355 ORTHO05D005228 1.2e-30 136.7 100 64.0
AUR62040465 Chenopodium quinoa HOM05D004355 ORTHO05D005228 1.2e-30 136.7 100 64.0
EL10Ac7g16576 Beta vulgaris HOM05D004355 ORTHO05D005228 1.5e-30 136.3 100 65.0
Ah.08g211740 Amaranthus hybridus HOM05D004355 ORTHO05D005228 3.8e-29 131.7 100 61.0
CANSAT80G0576 Cannabis sativa HOM05D004355 ORTHO05D005228 9.3e-28 127.1 99 58.6
CiPaw.10G132700 Carya illinoinensis HOM05D004355 ORTHO05D005228 2.1e-27 125.9 99 57.6
Glyma.03G182000 Glycine max HOM05D004355 ORTHO05D005228 2.1e-27 125.9 99 60.6
Phvul.001G178100 Phaseolus vulgaris HOM05D004355 ORTHO05D005228 3.5e-27 125.2 99 61.6
VMungo1383G3555 Vigna mungo HOM05D004355 ORTHO05D005228 3.5e-27 125.2 99 61.6
Glyma.19G182500 Glycine max HOM05D004355 ORTHO05D005228 7.9e-27 124.0 99 60.6
Prupe.6G235000 Prunus persica HOM05D004355 ORTHO05D005228 7.9e-27 124.0 99 58.6
Lj1g0007988 Lotus japonicus HOM05D004355 ORTHO05D005228 1.3e-26 123.2 99 57.6
MD04G1095900 Malus domestica HOM05D004355 ORTHO05D005228 1.3e-26 123.2 99 58.6
Atru.chr8.1850 Acer truncatum HOM05D004355 ORTHO05D005228 2.3e-26 122.5 99 57.6
CsaV3_3G035850 Cucumis sativus L. HOM05D004355 ORTHO05D005228 5.1e-26 121.3 108 55.6
Dinv37299 Davidia involucrata HOM05D004355 ORTHO05D005228 5.1e-26 121.3 99 59.6
Lalb_Chr01g0018741 Lupinus albus HOM05D004355 ORTHO05D005228 6.7e-26 120.9 99 58.6
ClCG10G020240 Citrullus lanatus HOM05D004355 ORTHO05D005228 8.7e-26 120.6 108 55.6
Sed0019590 Sechium edule HOM05D004355 ORTHO05D005228 8.7e-26 120.6 108 55.6
MELO3C009345.2 Cucumis melo HOM05D004355 ORTHO05D005228 1.1e-25 120.2 108 54.6
Cpa.g.sc92.114 Carica papaya HOM05D004355 ORTHO05D005228 1.9e-25 119.4 99 59.6
Cfa017577 Carpinus fangiana HOM05D004355 ORTHO05D005228 1.9e-25 119.4 99 54.5
Haze_20575 Corylus avellana HOM05D004355 ORTHO05D005228 2.5e-25 119.0 99 54.5
MD12G1115900 Malus domestica HOM05D004355 ORTHO05D005228 3.3e-25 118.6 99 57.6
Ciclev10011674m.g Citrus clementina HOM05D004355 ORTHO05D005228 4.3e-25 118.2 98 58.2
Dinv35767 Davidia involucrata HOM05D004355 ORTHO05D003235 4.3e-25 118.2 99 57.6
TWI74G0762 Tripterygium wilfordii HOM05D004355 ORTHO05D005228 4.3e-25 118.2 99 55.6
TAR633G2000 Trochodendron aralioides HOM05D004355 ORTHO05D005228 7.4e-25 117.5 99 54.5
Ca_08851_v3 Cicer arietinum L. HOM05D004355 ORTHO05D005228 9.7e-25 117.1 99 57.6
PGR004G0459 Punica granatum HOM05D004355 ORTHO05D005228 1.6e-24 116.3 96 55.2
TPR.G9373 Trifolium pratense HOM05D004355 ORTHO05D005228 1.6e-24 116.3 99 55.6
Potri.006G126600 Populus trichocarpa HOM05D004355 ORTHO05D005228 2.2e-24 115.9 98 52.0
QL07p044062 Quercus lobata HOM05D004355 ORTHO05D005228 2.8e-24 115.5 97 53.6
Sabra06G0099700 Salix brachista HOM05D004355 ORTHO05D005228 2.8e-24 115.5 98 51.0
Eucgr.A01137 Eucalyptus grandis HOM05D004355 ORTHO05D005228 4.8e-24 114.8 99 54.5
Medtr7g101730 Medicago truncatula HOM05D004355 ORTHO05D005228 6.3e-24 114.4 99 54.5
Psat3g043400 Pisum sativum HOM05D004355 ORTHO05D005228 6.3e-24 114.4 99 55.6
Manes.09G063900 Manihot esculenta HOM05D004355 ORTHO05D005228 8.2e-24 114.0 99 52.5
Rhsim05G0179400 Rhododendron simsii HOM05D004355 ORTHO05D005228 1.1e-23 113.6 99 56.6
TAR369G0267 Trochodendron aralioides HOM05D004355 ORTHO05D005228 1.1e-23 113.6 99 55.6
TAR636G0816 Trochodendron aralioides HOM05D004355 ORTHO05D005228 1.1e-23 113.6 99 55.6
AL4G33360 Arabidopsis lyrata HOM05D004355 ORTHO05D005228 1.8e-23 112.8 96 54.2
Hma1.2p1_1099F.1_g256870 Hydrangea macrophylla HOM05D004355 ORTHO05D005228 1.8e-23 112.8 99 54.5
Aa31LG5G22300 Aethionema arabicum HOM05D004355 ORTHO05D005228 2.4e-23 112.5 96 52.1
Duzib093G1016 Durio zibethinus HOM05D004355 ORTHO05D005228 2.4e-23 112.5 96 52.1
CSS0012498 Camellia sinensis var. sinensis HOM05D004355 ORTHO05D005228 3.1e-23 112.1 99 56.6
Lalb_Chr25g0289061 Lupinus albus HOM05D004355 ORTHO05D005228 3.1e-23 112.1 99 52.5
Manes.08G008600 Manihot esculenta HOM05D004355 ORTHO05D005228 3.1e-23 112.1 99 52.5
PSO339G4715 Papaver somniferum HOM05D004355 ORTHO05D005228 3.1e-23 112.1 99 55.6
FAN02G3539 Fragaria x ananassa HOM05D004355 ORTHO05D005228 5.3e-23 111.3 99 52.5
FAN05G2251 Fragaria x ananassa HOM05D004355 ORTHO05D005228 5.3e-23 111.3 99 51.5
Sp4g19340 Schrenkiella parvula HOM05D004355 ORTHO05D005228 5.3e-23 111.3 96 52.1
CSS0033330 Camellia sinensis var. sinensis HOM05D004355 ORTHO05D005228 6.9e-23 110.9 99 55.6
CSS0041806 Camellia sinensis var. sinensis HOM05D004355 ORTHO05D005228 6.9e-23 110.9 99 55.6
TWI77G0715 Tripterygium wilfordii HOM05D004355 ORTHO05D005228 6.9e-23 110.9 99 51.5
Sabra16G0096600 Salix brachista HOM05D004355 ORTHO05D005228 9.0e-23 110.5 98 52.0
FvH4_6g16100 Fragaria vesca HOM05D004355 ORTHO05D005228 1.2e-22 110.2 99 51.5
FAN14G0897 Fragaria x ananassa HOM05D004355 ORTHO05D005228 1.2e-22 110.2 99 51.5
FAN14G5907 Fragaria x ananassa HOM05D004355 ORTHO05D005228 1.2e-22 110.2 99 51.5
vmacro08776 Vaccinium macrocarpon HOM05D004355 ORTHO05D005228 1.2e-22 110.2 96 57.3
Duzib128G1889 Durio zibethinus HOM05D004355 ORTHO05D005228 2.0e-22 109.4 96 53.1
RcHm_v2.0_Chr3g0469941 Rosa chinensis HOM05D004355 ORTHO05D005228 2.0e-22 109.4 99 51.5
Potri.016G091400 Populus trichocarpa HOM05D004355 ORTHO05D005228 2.6e-22 109.0 98 50.0
Sed0012541 Sechium edule HOM05D004355 ORTHO05D005228 3.4e-22 108.6 99 48.5
A05p08800 Brassica napus HOM05D004355 ORTHO05D005228 4.5e-22 108.2 96 54.2
BraA05t19847Z Brassica rapa HOM05D004355 ORTHO05D005228 4.5e-22 108.2 96 54.2
DCAR_009301 Daucus carota HOM05D004355 ORTHO05D005228 4.5e-22 108.2 99 54.5
COL.COLO4_26990 Corchorus olitorius HOM05D004355 ORTHO05D005228 5.9e-22 107.8 96 52.1
Gohir.A09G148600 Gossypium hirsutum HOM05D004355 ORTHO05D005228 7.6e-22 107.5 98 50.0
Gohir.D09G144400 Gossypium hirsutum HOM05D004355 ORTHO05D005228 7.6e-22 107.5 98 50.0
Gorai.006G165700 Gossypium raimondii HOM05D004355 ORTHO05D005228 7.6e-22 107.5 98 50.0
HanXRQChr11g0350251 Helianthus annuus HOM05D004355 ORTHO05D005228 7.6e-22 107.5 99 51.5
Rhsim04G0145100 Rhododendron simsii HOM05D004355 ORTHO05D005228 7.6e-22 107.5 96 57.3
THA.LOC104823460 Tarenaya hassleriana HOM05D004355 ORTHO05D005228 7.6e-22 107.5 99 50.5
BcaC02g11829 Brassica carinata HOM05D004355 ORTHO05D005228 1.0e-21 107.1 96 52.1
C04p10920 Brassica napus HOM05D004355 ORTHO05D005228 1.0e-21 107.1 96 52.1
BolC4t22685H Brassica oleracea HOM05D004355 ORTHO05D005228 1.0e-21 107.1 96 52.1
THA.LOC104806491 Tarenaya hassleriana HOM05D004355 ORTHO05D005228 1.0e-21 107.1 99 50.5
Thecc.05G062900 Theobroma cacao HOM05D004355 ORTHO05D005228 1.3e-21 106.7 98 50.0
ECA248G2910 Erigeron canadensis HOM05D004355 ORTHO05D005228 3.8e-21 105.1 99 52.5
ClCG04G009160 Citrullus lanatus HOM05D004355 ORTHO05D005228 5.0e-21 104.8 99 47.5
Duzib106G0643 Durio zibethinus HOM05D004355 ORTHO05D005228 5.0e-21 104.8 96 50.0
Gohir.D04G112100 Gossypium hirsutum HOM05D004355 ORTHO05D005228 5.0e-21 104.8 96 52.1
Gohir.A04G073200 Gossypium hirsutum HOM05D004355 ORTHO05D005228 6.5e-21 104.4 96 52.1
Gorai.009G416200 Gossypium raimondii HOM05D004355 ORTHO05D005228 6.5e-21 104.4 96 52.1
Aqoxy1G01202 Aquilegia oxysepala HOM05D004355 ORTHO05D005228 8.5e-21 104.0 99 47.5
MELO3C014220.2 Cucumis melo HOM05D004355 ORTHO05D005228 1.4e-20 103.2 99 46.5
CsaV3_6G039740 Cucumis sativus L. HOM05D004355 ORTHO05D005228 1.4e-20 103.2 99 46.5
Actinidia19660 Actinidia chinensis HOM05D004355 ORTHO05D005228 9.3e-20 100.5 92 52.2
vmacro20020 Vaccinium macrocarpon HOM05D004355 ORTHO05D005228 1.2e-19 100.1 99 51.5
Cc06_g04030 Coffea canephora HOM05D004355 ORTHO05D005228 1.6e-19 99.8 99 43.4
Nn2g13729 Nelumbo nucifera HOM05D004355 ORTHO05D005228 2.7e-19 99.0 99 45.5
Actinidia31337 Actinidia chinensis HOM05D004355 ORTHO05D005228 6.1e-19 97.8 99 50.5
Nitab4.5_0000101g0300 Nicotiana tabacum HOM05D004355 ORTHO05D005228 7.9e-19 97.4 99 46.5
Nitab4.5_0002963g0100 Nicotiana tabacum HOM05D004355 ORTHO05D005228 1.4e-18 96.7 99 46.5
PGSC0003DMG400035240 Solanum tuberosum HOM05D004355 ORTHO05D005228 1.4e-18 96.7 99 47.5
Solyc09g007950.3 Solanum lycopersicum HOM05D004355 ORTHO05D005228 2.3e-18 95.9 99 47.5
Sopen09g002770 Solanum pennellii HOM05D004355 ORTHO05D005228 2.3e-18 95.9 99 47.5
Gohir.D01G128600 Gossypium hirsutum HOM05D004355 ORTHO05D005228 6.7e-18 94.4 95 46.3
Gohir.A01G139600 Gossypium hirsutum HOM05D004355 ORTHO05D005228 8.8e-18 94.0 95 46.3
HanXRQChr13g0399881 Helianthus annuus HOM05D004355 ORTHO05D005228 8.8e-18 94.0 98 49.0
Peaxi162Scf00123g01123 Petunia axillaris HOM05D004355 ORTHO05D005228 1.1e-17 93.6 99 45.5
PGR004G2422 Punica granatum HOM05D004355 ORTHO05D005228 1.9e-17 92.8 96 47.9
ECA233G2716 Erigeron canadensis HOM05D004355 ORTHO05D005228 3.3e-17 92.0 95 44.2
Lsat_1_v5_gn_1_53141 Lactuca sativa HOM05D004355 ORTHO05D005228 4.3e-17 91.7 75 56.0
Migut.L01688 Erythranthe guttata HOM05D004355 ORTHO05D005228 7.4e-17 90.9 99 43.4
Gorai.002G162400 Gossypium raimondii HOM05D004355 ORTHO05D005228 9.7e-17 90.5 90 46.7
FAN09G2758 Fragaria x ananassa HOM05D004355 ORTHO05D005228 2.4e-15 85.9 72 55.6
Lsat_1_v5_gn_6_31260 Lactuca sativa HOM05D004355 ORTHO05D005228 1.2e-14 83.6 99 38.4
SGA_v2.0_scaffold75G24855 Striga asiatica HOM05D004355 ORTHO05D005228 1.2e-14 83.6 97 44.3
MSTRG.26701 Avicennia marina HOM05D004355 ORTHO05D005228 1.5e-14 83.2 99 41.4
GSVIVG01025706001 Vitis vinifera HOM05D004355 ORTHO05D005228 2.6e-14 82.4 64 60.9
SalBow5G3882 Salvia bowleyana HOM05D004355 ORTHO05D005228 7.7e-14 80.9 102 41.2
SalBow5G3919 Salvia bowleyana HOM05D004355 ORTHO05D005228 1.0e-13 80.5 102 41.2
Lsat_1_v5_gn_6_70860 Lactuca sativa HOM05D004355 ORTHO05D005228 1.3e-13 80.1 99 39.4
Lsat_1_v5_gn_6_31200 Lactuca sativa HOM05D004355 ORTHO05D005228 1.9e-12 76.3 99 37.4
Lsat_1_v5_gn_6_31300 Lactuca sativa HOM05D004355 ORTHO05D005228 2.7e-11 72.4 96 34.4
CiPaw.09G174200 Carya illinoinensis HOM05D004355 ORTHO05D005228 7.9e-11 70.9 99 38.4
ATR0048G009 Amborella trichopoda HOM05D004355 ORTHO05D005228 3.0e-10 68.9 79 39.2
Lj2P114T36 Lonicera japonica HOM05D004355 ORTHO05D005228 5.1e-10 68.2 62 53.2
AT2G37035 Arabidopsis thaliana HOM05D004355 ORTHO05D005228 6.7e-10 67.8 71 52.1
Migut.J00528 Erythranthe guttata HOM05D004355 ORTHO05D005228 1.5e-09 66.6 97 38.1
Carub.0004s1891 Capsella rubella HOM05D004355 ORTHO05D005228 2.0e-09 66.2 71 49.3
CARHR131530 Cardamine hirsuta HOM05D004355 ORTHO05D005228 2.6e-09 65.9 64 51.6
unitig_899.g15220 Utricularia gibba HOM05D002910 ORTHO05D003235 2.6e-09 65.9 98 33.7
unitig_746.g26764 Utricularia gibba HOM05D004355 ORTHO05D005228 8.2e-08 60.8 92 33.7
Zm00001eb221710 Zea mays HOM05D004355 ORTHO05D005228 8.2e-08 60.8 100 34.0
ECA233G2931 Erigeron canadensis HOM05D004355 ORTHO05D005228 1.8e-07 59.7 96 35.4
Os10g0478400 Oryza sativa ssp. japonica HOM05D004355 ORTHO05D005228 2.6e-06 55.8 97 32.0


User provided reference genes

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