Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc02g0001470 Simmondsia chinensis HOM05D005036 ORTHO05D005881 1.7e-93 346.3 208 100.0
EL10Ac7g16693 Beta vulgaris HOM05D005036 ORTHO05D005881 1.5e-57 226.9 204 71.6
C03p43440 Brassica napus HOM05D005036 ORTHO05D005881 4.9e-53 211.8 201 57.2
AUR62041564 Chenopodium quinoa HOM05D005036 ORTHO05D005881 8.3e-53 211.1 205 67.8
BolC3t16615H Brassica oleracea HOM05D005036 ORTHO05D005881 1.9e-52 209.9 201 56.7
Sp3g08240 Schrenkiella parvula HOM05D005036 ORTHO05D005881 5.4e-52 208.4 199 64.3
AUR62026956 Chenopodium quinoa HOM05D005036 ORTHO05D005881 7.0e-52 208.0 205 65.9
A03p35790 Brassica napus HOM05D005036 ORTHO05D005881 3.5e-51 205.7 201 55.2
BraA03t12751Z Brassica rapa HOM05D005036 ORTHO05D005881 3.5e-51 205.7 201 55.2
Haze_20497 Corylus avellana HOM05D005036 ORTHO05D005881 3.0e-50 202.6 204 64.2
vmacro08795 Vaccinium macrocarpon HOM05D005036 ORTHO05D005881 6.6e-50 201.4 258 54.7
Hund20124 Selenicereus undatus HOM05D005036 ORTHO05D005881 8.6e-50 201.1 217 63.1
Thecc.05G071400 Theobroma cacao HOM05D005036 ORTHO05D005881 8.6e-50 201.1 202 65.3
BcaC01g04252 Brassica carinata HOM05D005036 ORTHO05D005881 1.9e-49 199.9 187 56.7
Duzib093G0365 Durio zibethinus HOM05D005036 ORTHO05D005881 4.3e-49 198.7 202 64.9
Cfa017655 Carpinus fangiana HOM05D005036 ORTHO05D005881 1.2e-48 197.2 204 60.3
Gohir.D01G201000 Gossypium hirsutum HOM05D005036 ORTHO05D005881 1.6e-48 196.8 202 66.3
Atru.chr8.1751 Acer truncatum HOM05D005036 ORTHO05D005881 2.3e-47 193.0 202 62.4
Actinidia32478 Actinidia chinensis HOM05D005036 ORTHO05D005881 2.3e-47 193.0 205 65.4
Gohir.A01G214100 Gossypium hirsutum HOM05D005036 ORTHO05D005881 3.1e-47 192.6 202 65.3
Nn2g13858 Nelumbo nucifera HOM05D005036 ORTHO05D005881 2.0e-46 189.9 204 63.2
Aa31LG3G2370 Aethionema arabicum HOM05D005036 ORTHO05D005881 7.5e-46 188.0 180 62.8
CiPaw.10G127400 Carya illinoinensis HOM05D005036 ORTHO05D005881 7.5e-46 188.0 208 63.9
Sc02g0001400 Simmondsia chinensis HOM05D005036 ORTHO05D005881 7.5e-46 188.0 205 63.4
Aqoxy1G01100 Aquilegia oxysepala HOM05D005036 ORTHO05D005881 1.3e-45 187.2 203 53.7
Actinidia31315 Actinidia chinensis HOM05D005036 ORTHO05D005881 3.7e-45 185.7 205 63.4
GSVIVG01033679001 Vitis vinifera HOM05D005036 ORTHO05D005881 3.7e-45 185.7 200 64.5
QL07p042294 Quercus lobata HOM05D005036 ORTHO05D005881 6.4e-45 184.9 231 58.0
HanXRQChr13g0400721 Helianthus annuus HOM05D005036 ORTHO05D005881 2.4e-44 183.0 208 62.0
TWI53G1582 Tripterygium wilfordii HOM05D005036 ORTHO05D005881 2.4e-44 183.0 203 62.1
RhsimUnG0004000 Rhododendron simsii HOM05D005036 ORTHO05D005881 1.2e-43 180.6 210 58.1
RhsimUnG0067400 Rhododendron simsii HOM05D005036 ORTHO05D005881 1.2e-43 180.6 210 58.1
Cpa.g.sc92.91 Carica papaya HOM05D005036 ORTHO05D005881 2.1e-43 179.9 201 60.2
Ciclev10012800m.g Citrus clementina HOM05D005036 ORTHO05D005881 2.1e-43 179.9 200 60.5
Lalb_Chr02g0155461 Lupinus albus HOM05D005036 ORTHO05D005881 4.6e-43 178.7 204 60.3
Phvul.007G151800 Phaseolus vulgaris HOM05D005036 ORTHO05D005881 6.0e-43 178.3 204 61.3
AL3G21130 Arabidopsis lyrata HOM05D005036 ORTHO05D005881 1.0e-42 177.6 200 58.0
Psat6g076000 Pisum sativum HOM05D005036 ORTHO05D005881 1.7e-42 176.8 204 60.8
VMungo0720G2361 Vigna mungo HOM05D005036 ORTHO05D005881 1.7e-42 176.8 204 60.8
AT3G09890 Arabidopsis thaliana HOM05D005036 ORTHO05D005881 2.3e-42 176.4 199 57.8
arahy.Tifrunner.gnm1.ann1.HJT5F9 Arachis hypogaea HOM05D005036 ORTHO05D005881 2.3e-42 176.4 198 61.1
arahy.Tifrunner.gnm1.ann1.LB0AEW Arachis hypogaea HOM05D005036 ORTHO05D005881 2.3e-42 176.4 198 61.1
CANSAT80G0983 Cannabis sativa HOM05D005036 ORTHO05D005881 2.3e-42 176.4 207 59.9
Duzib128G0734 Durio zibethinus HOM05D005036 ORTHO05D005881 3.0e-42 176.0 203 62.6
Medtr1g062770 Medicago truncatula HOM05D005036 ORTHO05D005881 3.9e-42 175.6 203 62.1
COL.COLO4_26911 Corchorus olitorius HOM05D005036 ORTHO05D005881 5.1e-42 175.3 221 60.2
CARHR084400 Cardamine hirsuta HOM05D005036 ORTHO05D005881 6.6e-42 174.9 199 58.8
Cc06_g04530 Coffea canephora HOM05D005036 ORTHO05D005881 6.6e-42 174.9 207 61.8
CsaV3_3G036210 Cucumis sativus L. HOM05D005036 ORTHO05D005881 8.6e-42 174.5 201 53.2
MELO3C009379.2 Cucumis melo HOM05D005036 ORTHO05D005881 1.5e-41 173.7 203 53.2
Ca_08897_v3 Cicer arietinum L. HOM05D005036 ORTHO05D005881 2.5e-41 172.9 205 61.0
Manes.09G062100 Manihot esculenta HOM05D005036 ORTHO05D005881 2.5e-41 172.9 198 61.6
ClCG10G019890 Citrullus lanatus HOM05D005036 ORTHO05D005881 3.3e-41 172.6 205 58.0
MD12G1106800 Malus domestica HOM05D005036 ORTHO05D005881 3.3e-41 172.6 202 60.4
Sed0017772 Sechium edule HOM05D005036 ORTHO05D005881 5.6e-41 171.8 201 57.7
TPR.G20997 Trifolium pratense HOM05D005036 ORTHO05D005881 7.3e-41 171.4 204 61.8
Gorai.002G245700 Gossypium raimondii HOM05D005036 ORTHO05D005881 9.5e-41 171.0 180 66.1
FAN05G3428 Fragaria x ananassa HOM05D005036 ORTHO05D005881 1.2e-40 170.6 203 61.6
FAN09G0503 Fragaria x ananassa HOM05D005036 ORTHO05D000003 1.2e-40 170.6 203 61.6
Oeu016995.1 Olea europaea HOM05D005036 ORTHO05D005881 1.2e-40 170.6 206 59.7
Glyma.13G146500 Glycine max HOM05D005036 ORTHO05D005881 1.6e-40 170.2 204 59.8
CSS0031942 Camellia sinensis var. sinensis HOM05D005036 ORTHO05D005881 2.1e-40 169.9 201 61.2
CSS0042807 Camellia sinensis var. sinensis HOM05D005036 ORTHO05D005881 2.1e-40 169.9 201 61.2
FAN02G0694 Fragaria x ananassa HOM05D000001 ORTHO05D000003 2.1e-40 169.9 203 61.1
Manes.08G013000 Manihot esculenta HOM05D005036 ORTHO05D005881 2.1e-40 169.9 199 60.3
THA.LOC104823230 Tarenaya hassleriana HOM05D005036 ORTHO05D005881 3.6e-40 169.1 199 60.8
Thhalv10021529m.g Eutrema salsugineum HOM05D005036 ORTHO05D005881 4.7e-40 168.7 200 57.0
Hma1.2p1_0547F.1_g176530 Hydrangea macrophylla HOM05D005036 ORTHO05D005881 4.7e-40 168.7 206 60.2
Dinv37336 Davidia involucrata HOM05D005036 ORTHO05D005881 6.2e-40 168.3 149 73.8
Peaxi162Scf00110g00120 Petunia axillaris HOM05D005036 ORTHO05D005881 6.2e-40 168.3 203 59.1
FAN05G0966 Fragaria x ananassa HOM05D005036 ORTHO05D005881 8.1e-40 167.9 203 61.1
Glyma.10G059800 Glycine max HOM05D005036 ORTHO05D005881 8.1e-40 167.9 204 59.8
BcaC01g04251 Brassica carinata HOM05D005036 ORTHO05D005881 1.1e-39 167.5 200 58.0
PGR004G0584 Punica granatum HOM05D005036 ORTHO05D005881 1.1e-39 167.5 206 58.7
BcaB03g11582 Brassica carinata HOM05D005036 ORTHO05D005881 2.3e-39 166.4 199 58.8
Lj5g0011319 Lotus japonicus HOM05D005036 ORTHO05D005881 2.3e-39 166.4 206 54.4
Eucgr.A01621 Eucalyptus grandis HOM05D005036 ORTHO05D005881 3.1e-39 166.0 181 66.3
FvH4_6g16830 Fragaria vesca HOM05D005036 ORTHO05D005881 3.1e-39 166.0 203 61.1
FAN14G1811 Fragaria x ananassa HOM05D000001 ORTHO05D000003 3.1e-39 166.0 203 61.1
RcHm_v2.0_Chr3g0470841 Rosa chinensis HOM05D005036 ORTHO05D005881 3.1e-39 166.0 204 60.3
Potri.016G097900 Populus trichocarpa HOM05D005036 ORTHO05D005881 4.0e-39 165.6 193 60.6
Lsat_1_v5_gn_6_28400 Lactuca sativa HOM05D005036 ORTHO05D005881 6.8e-39 164.9 201 59.7
Carub.0003s0899 Capsella rubella HOM05D005036 ORTHO05D005881 2.6e-38 162.9 199 55.3
TAR623G1598 Trochodendron aralioides HOM05D005036 ORTHO05D005881 2.6e-38 162.9 200 57.0
ECA233G6008 Erigeron canadensis HOM05D005036 ORTHO05D005881 3.4e-38 162.5 211 57.3
Oeu056532.1 Olea europaea HOM05D005036 ORTHO05D005881 3.4e-38 162.5 196 58.7
Nitab4.5_0003314g0090 Nicotiana tabacum HOM05D005036 ORTHO05D005881 4.4e-38 162.2 205 55.1
Nitab4.5_0002373g0080 Nicotiana tabacum HOM05D005036 ORTHO05D005881 9.9e-38 161.0 205 55.1
Sopen09g003280 Solanum pennellii HOM05D005036 ORTHO05D005881 1.7e-37 160.2 203 56.7
PGSC0003DMG400003873 Solanum tuberosum HOM05D005036 ORTHO05D005881 1.7e-37 160.2 203 58.1
PSO339G6683 Papaver somniferum HOM05D005036 ORTHO05D005881 2.2e-37 159.8 204 56.4
Sabra06G0095700 Salix brachista HOM05D005036 ORTHO05D005881 2.9e-37 159.5 195 59.0
Peaxi162Scf01128g00018 Petunia axillaris HOM05D005036 ORTHO05D005881 3.7e-37 159.1 199 46.2
Solyc09g008450.3 Solanum lycopersicum HOM05D005036 ORTHO05D005881 3.7e-37 159.1 203 54.2
Nitab4.5_0000132g0510 Nicotiana tabacum HOM05D005036 ORTHO05D005881 4.9e-37 158.7 203 55.2
Prupe.7G125700 Prunus persica HOM05D005036 ORTHO05D005881 2.4e-36 156.4 205 58.5
Potri.006G121500 Populus trichocarpa HOM05D005036 ORTHO05D005881 9.2e-36 154.5 195 59.0
SGA_v2.0_scaffold224G42932 Striga asiatica HOM05D005036 ORTHO05D005881 6.0e-35 151.8 209 50.2
Sopen10g033320 Solanum pennellii HOM05D005036 ORTHO05D005881 7.8e-35 151.4 203 55.7
CAN.G488.30 Capsicum annuum HOM05D005036 ORTHO05D005881 3.0e-34 149.4 203 55.7
Migut.L01721 Erythranthe guttata HOM05D005036 ORTHO05D005881 3.0e-34 149.4 210 52.9
PGSC0003DMG400028280 Solanum tuberosum HOM05D005036 ORTHO05D005881 1.1e-33 147.5 203 55.2
BcaC05g29716 Brassica carinata HOM05D005036 ORTHO05D005881 3.3e-33 146.0 200 43.5
CDE06G0353 Ceratophyllum demersum HOM05D005036 ORTHO05D005881 7.3e-33 144.8 201 53.2
HPP92_008393 Vanilla planifolia HOM05D005036 ORTHO05D005881 7.3e-33 144.8 206 42.7
Migut.J00453 Erythranthe guttata HOM05D005036 ORTHO05D005881 2.8e-32 142.9 205 55.1
MSTRG.10334 Avicennia marina HOM05D005036 ORTHO05D005881 4.7e-32 142.1 212 41.0
SGA_v2.0_scaffold40G15474 Striga asiatica HOM05D005036 ORTHO05D005881 8.1e-32 141.4 205 54.6
unitig_578.g16379 Utricularia gibba HOM05D000468 ORTHO05D005881 2.4e-31 139.8 209 53.1
PSO063G2941 Papaver somniferum HOM05D005036 ORTHO05D005881 6.8e-31 138.3 145 69.7
DCAR_017666 Daucus carota HOM05D005036 ORTHO05D005881 9.9e-30 134.4 200 52.5
MBI13_g13833_MAGBIO Magnolia biondii HOM05D005036 ORTHO05D005881 1.3e-29 134.0 211 53.6
BcaC05g29714 Brassica carinata HOM05D005036 ORTHO05D005881 1.4e-28 130.6 200 39.5
BcaC05g29715 Brassica carinata HOM05D005036 ORTHO05D005881 1.4e-28 130.6 200 39.5
ATR0329G020 Amborella trichopoda HOM05D005036 ORTHO05D005881 3.2e-28 129.4 204 52.5
BcaC05g29712 Brassica carinata HOM05D005036 ORTHO05D005881 5.4e-28 128.6 200 39.5
BcaC05g29713 Brassica carinata HOM05D005036 ORTHO05D005881 9.2e-28 127.9 207 38.6
Nitab4.5_0003268g0010 Nicotiana tabacum HOM05D005036 ORTHO05D005881 9.2e-28 127.9 203 39.9
Psat6g104720 Pisum sativum HOM05D001839 ORTHO05D001867 1.1e-25 120.9 167 43.1
SEGI_13906 Sequoiadendron giganteum HOM05D005036 ORTHO05D005881 4.3e-25 119.0 210 47.1
BcaC05g29502 Brassica carinata HOM05D005036 ORTHO05D005881 2.1e-24 116.7 199 46.7
BcaC05g29503 Brassica carinata HOM05D005036 ORTHO05D005881 2.1e-24 116.7 199 46.7
C05p58170 Brassica napus HOM05D005036 ORTHO05D005881 2.1e-24 116.7 199 46.7
BolC5t34473H Brassica oleracea HOM05D005036 ORTHO05D005881 2.1e-24 116.7 199 46.7
MBI15_g24508_MAGBIO Magnolia biondii HOM05D005036 ORTHO05D005881 6.2e-24 115.2 145 46.9
Lj3A990G72 Lonicera japonica HOM05D005036 ORTHO05D005881 1.1e-23 114.4 147 59.2
DCAR_015009 Daucus carota HOM05D005036 ORTHO05D005881 2.0e-22 110.2 234 32.9
A05p39150 Brassica napus HOM05D005036 ORTHO05D005881 7.6e-22 108.2 199 44.7
BraA05t22704Z Brassica rapa HOM05D005036 ORTHO05D005881 7.6e-22 108.2 199 44.7
DCAR_032184 Daucus carota HOM05D005036 ORTHO05D005881 2.4e-20 103.2 215 32.6
MBI16_g11024_MAGBIO Magnolia biondii HOM05D005036 ORTHO05D005881 9.3e-20 101.3 153 55.6
Carub.0003s0923 Capsella rubella HOM05D005036 ORTHO05D005881 2.7e-19 99.8 139 54.0
Os03g0145800 Oryza sativa ssp. japonica HOM05D005036 ORTHO05D005881 2.7e-19 99.8 138 38.4
Ah.14g078370 Amaranthus hybridus HOM05D005036 ORTHO05D005881 4.6e-19 99.0 153 41.2
Zm00001eb003690 Zea mays HOM05D005036 ORTHO05D005881 1.3e-18 97.4 199 45.2
MBI01_g04638_MAGBIO Magnolia biondii HOM05D005036 ORTHO05D005881 2.3e-18 96.7 153 54.9
MBI18_g12436_MAGBIO Magnolia biondii HOM05D005036 ORTHO05D005881 5.1e-18 95.5 154 53.2
THA.LOC104816666 Tarenaya hassleriana HOM05D005036 ORTHO05D005881 5.1e-18 95.5 85 58.8
SGA_v2.0_scaffold75G24776 Striga asiatica HOM05D005036 ORTHO05D005881 2.5e-17 93.2 149 41.6
Psat4g020880 Pisum sativum HOM05D005036 ORTHO05D005881 2.4e-15 86.7 86 79.1
Pp3c10_11210 Physcomitrium patens HOM05D005036 ORTHO05D005881 4.5e-14 82.4 191 40.3
Atru.chr6.1495 Acer truncatum HOM05D005036 ORTHO05D005881 1.1e-12 77.8 56 67.9
AagrBONN_evm.TU.Sc2ySwM_368.2717 Anthoceros agrestis HOM05D005036 ORTHO05D005881 2.1e-11 73.6 105 42.9
Atru.chr4.2604 Acer truncatum HOM05D005036 ORTHO05D005881 4.6e-11 72.4 55 65.5
ATR0329G069 Amborella trichopoda HOM05D005036 ORTHO05D005881 2.3e-10 70.1 150 30.0
AL7G50030 Arabidopsis lyrata HOM05D055290 ORTHO05D038628 2.3e-10 70.1 157 32.5
CBR_g9117 Chara braunii HOM05D005036 ORTHO05D005881 6.7e-10 68.6 94 41.5
Lj3C990T8 Lonicera japonica HOM05D005036 ORTHO05D005881 1.1e-09 67.8 59 55.9
MCO14G431 Micromonas commoda HOM05D005036 ORTHO05D005881 1.8e-07 60.5 58 48.3
Solyc10g083870.2 Solanum lycopersicum HOM05D005036 ORTHO05D005881 1.8e-07 60.5 118 33.9
Hund08989 Selenicereus undatus HOM05D001854 ORTHO05D001800 3.4e-06 56.2 111 31.5


User provided reference genes

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