Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc02g0000100 Simmondsia chinensis HOM05D005218 ORTHO05D006657 1.0e-235 819.7 411 100.0
Ah.04g166670 Amaranthus hybridus HOM05D005218 ORTHO05D006657 3.4e-167 592.0 377 76.9
Hund19374 Selenicereus undatus HOM05D005218 ORTHO05D006657 4.6e-164 581.6 377 74.5
TAR369G0292 Trochodendron aralioides HOM05D005218 ORTHO05D006657 1.4e-160 570.1 379 73.4
GSVIVG01029830001 Vitis vinifera HOM05D005218 ORTHO05D006657 7.6e-159 564.3 379 73.4
Hma1.2p1_1020F.1_g248500 Hydrangea macrophylla HOM05D005218 ORTHO05D006657 1.3e-158 563.5 379 73.1
QL07p030229 Quercus lobata HOM05D005218 ORTHO05D006657 1.7e-158 563.1 379 72.0
Cfa016978 Carpinus fangiana HOM05D005218 ORTHO05D006657 2.2e-158 562.8 377 73.2
Dinv16915 Davidia involucrata HOM05D005218 ORTHO05D006657 5.0e-158 561.6 379 72.6
CSS0045446 Camellia sinensis var. sinensis HOM05D005218 ORTHO05D006657 7.1e-157 557.8 379 71.5
Ciclev10011748m.g Citrus clementina HOM05D005218 ORTHO05D006657 1.2e-156 557.0 379 71.2
TWI74G0252 Tripterygium wilfordii HOM05D005218 ORTHO05D006657 1.2e-156 557.0 379 72.3
Nitab4.5_0003037g0020 Nicotiana tabacum HOM05D005218 ORTHO05D006657 2.7e-156 555.8 379 71.0
Duzib268G1588 Durio zibethinus HOM05D005218 ORTHO05D006657 4.6e-156 555.1 379 71.5
Nitab4.5_0002139g0070 Nicotiana tabacum HOM05D005218 ORTHO05D006657 1.0e-155 553.9 379 70.2
CANSAT21G2189 Cannabis sativa HOM05D005218 ORTHO05D006657 1.8e-155 553.1 379 71.5
Prupe.6G300700 Prunus persica HOM05D005218 ORTHO05D006657 1.8e-155 553.1 380 71.6
COL.COLO4_20050 Corchorus olitorius HOM05D005218 ORTHO05D006657 2.3e-155 552.7 379 71.2
Solyc10g074690.2 Solanum lycopersicum HOM05D005218 ORTHO05D006657 3.0e-155 552.4 378 70.1
Cc06_g00030 Coffea canephora HOM05D005218 ORTHO05D006657 8.7e-155 550.8 379 70.7
Gohir.D02G000700 Gossypium hirsutum HOM05D005218 ORTHO05D006657 8.7e-155 550.8 379 70.4
Gorai.005G001100 Gossypium raimondii HOM05D005218 ORTHO05D006657 1.1e-154 550.4 379 70.4
Peaxi162Scf00374g00623 Petunia axillaris HOM05D005218 ORTHO05D006657 1.1e-154 550.4 377 69.8
Sopen10g027170 Solanum pennellii HOM05D005218 ORTHO05D006657 1.9e-154 549.7 378 69.8
MSTRG.5474 Avicennia marina HOM05D005218 ORTHO05D006657 5.7e-154 548.1 379 69.1
Hma1.2p1_1020F.1_g248520 Hydrangea macrophylla HOM05D005218 ORTHO05D006657 1.6e-153 546.6 362 74.3
Gohir.A02G000400 Gossypium hirsutum HOM05D005218 ORTHO05D006657 2.8e-153 545.8 379 70.2
Thecc.04G061600 Theobroma cacao HOM05D005218 ORTHO05D006657 2.8e-153 545.8 379 70.7
arahy.Tifrunner.gnm1.ann1.6F524X Arachis hypogaea HOM05D005218 ORTHO05D006657 4.8e-153 545.0 379 70.2
PGR004G2278 Punica granatum HOM05D005218 ORTHO05D006657 6.3e-153 544.7 379 70.7
CAN.G455.1 Capsicum annuum HOM05D005218 ORTHO05D006657 1.4e-152 543.5 378 69.6
arahy.Tifrunner.gnm1.ann1.M7CUXC Arachis hypogaea HOM05D005218 ORTHO05D006657 3.1e-152 542.3 379 70.2
TWI77G0041 Tripterygium wilfordii HOM05D005218 ORTHO05D006657 5.3e-152 541.6 377 70.8
Atru.chr8.19_Atru.chr8.20 Acer truncatum HOM05D005218 ORTHO05D006657 9.0e-152 540.8 379 70.4
VMungo0331G1207 Vigna mungo HOM05D005218 ORTHO05D006657 9.0e-152 540.8 379 69.7
Sabra06G0088900 Salix brachista HOM05D005218 ORTHO05D006657 1.2e-151 540.4 381 70.6
Manes.08G165900 Manihot esculenta HOM05D005218 ORTHO05D006657 1.5e-151 540.0 379 69.7
EL10Ac4g10395 Beta vulgaris HOM05D005218 ORTHO05D006657 3.4e-151 538.9 362 73.8
Manes.09G119600 Manihot esculenta HOM05D005218 ORTHO05D006657 5.9e-151 538.1 379 69.4
Phvul.010G060400 Phaseolus vulgaris HOM05D005218 ORTHO05D006657 1.0e-150 537.3 379 68.3
MD12G1196200 Malus domestica HOM05D005218 ORTHO05D006657 1.3e-150 537.0 380 69.7
Rhsim04G0119400 Rhododendron simsii HOM05D005218 ORTHO05D006657 1.7e-150 536.6 417 65.2
Migut.J00001 Erythranthe guttata HOM05D005218 ORTHO05D006657 5.0e-150 535.0 380 67.6
Glyma.16G222300 Glycine max HOM05D005218 ORTHO05D006657 6.5e-150 534.6 379 68.3
Nn5g26729 Nelumbo nucifera HOM05D005218 ORTHO05D006657 6.5e-150 534.6 379 68.3
Eucgr.K01318 Eucalyptus grandis HOM05D005218 ORTHO05D006657 1.1e-149 533.9 379 69.4
Potri.016G143700 Populus trichocarpa HOM05D005218 ORTHO05D006657 1.9e-149 533.1 380 71.1
Glyma.03G000700 Glycine max HOM05D005218 ORTHO05D006657 5.5e-149 531.6 383 68.1
Ca_23103_v3 Cicer arietinum L. HOM05D005218 ORTHO05D006657 7.2e-149 531.2 379 69.1
MD04G1181300 Malus domestica HOM05D005218 ORTHO05D006657 9.4e-149 530.8 380 68.7
RcHm_v2.0_Chr3g0459311 Rosa chinensis HOM05D005218 ORTHO05D006657 6.1e-148 528.1 380 68.7
MBI15_g33472_MAGBIO Magnolia biondii HOM05D005218 ORTHO05D006657 7.9e-148 527.7 375 68.0
HanXRQChr11g0329321 Helianthus annuus HOM05D005218 ORTHO05D006657 1.8e-147 526.6 375 68.0
ECA236G4239 Erigeron canadensis HOM05D005218 ORTHO05D006657 2.5e-146 522.7 378 66.7
FvH4_6g09090 Fragaria vesca HOM05D005218 ORTHO05D006657 2.2e-145 519.6 381 67.5
FAN14G0475 Fragaria x ananassa HOM05D005218 ORTHO05D006657 4.8e-145 518.5 381 67.2
Lsat_1_v5_gn_8_108900 Lactuca sativa HOM05D005218 ORTHO05D006657 6.3e-145 518.1 380 66.1
Aqoxy2G00608 Aquilegia oxysepala HOM05D005218 ORTHO05D006657 8.2e-145 517.7 376 67.3
Lj3g0026233 Lotus japonicus HOM05D005218 ORTHO05D006657 1.8e-144 516.5 379 67.5
Aa31LG5G11280 Aethionema arabicum HOM05D005218 ORTHO05D006657 3.1e-144 515.8 379 66.2
CARHR212360 Cardamine hirsuta HOM05D005218 ORTHO05D006657 1.5e-143 513.5 379 67.5
AL6G10010 Arabidopsis lyrata HOM05D005218 ORTHO05D006657 2.0e-143 513.1 379 67.0
Sp6g41230 Schrenkiella parvula HOM05D005218 ORTHO05D006657 2.0e-143 513.1 379 67.3
AT5G01010 Arabidopsis thaliana HOM05D005218 ORTHO05D006657 3.4e-143 512.3 379 66.8
Thhalv10013603m.g Eutrema salsugineum HOM05D005218 ORTHO05D006657 4.5e-143 511.9 379 67.0
Lj2A53G27 Lonicera japonica HOM05D005218 ORTHO05D006657 4.5e-143 511.9 405 64.7
FAN02G3856 Fragaria x ananassa HOM05D005218 ORTHO05D006657 2.9e-142 509.2 380 66.6
BNapus_Darmor_BZH_scaffold_209p00020 Brassica napus HOM05D005218 ORTHO05D006657 3.8e-142 508.8 379 66.0
Actinidia20812 Actinidia chinensis HOM05D005218 ORTHO05D006657 6.5e-142 508.1 339 72.6
Lalb_Chr13g0290271 Lupinus albus HOM05D005218 ORTHO05D006657 5.5e-141 505.0 381 66.9
Carub.0024s0001 Capsella rubella HOM05D005218 ORTHO05D006657 9.4e-141 504.2 379 66.0
unitig_699.g19018 Utricularia gibba HOM05D005218 ORTHO05D006657 1.6e-140 503.4 376 65.2
ECA248G3767 Erigeron canadensis HOM05D005218 ORTHO05D006657 2.1e-140 503.1 375 65.9
BcaB01g06261 Brassica carinata HOM05D005218 ORTHO05D006657 3.6e-140 502.3 379 66.5
Medtr8g005040 Medicago truncatula HOM05D005218 ORTHO05D006657 7.9e-140 501.1 378 67.7
THA.LOC104816146 Tarenaya hassleriana HOM05D005218 ORTHO05D006657 3.0e-139 499.2 390 65.1
BcaC03g13099 Brassica carinata HOM05D005218 ORTHO05D006657 6.7e-139 498.0 379 65.7
Sed0017962 Sechium edule HOM05D005218 ORTHO05D006657 9.7e-138 494.2 379 65.2
CsaV3_4G013540 Cucumis sativus L. HOM05D005218 ORTHO05D006657 2.8e-137 492.7 377 65.3
PSO384G1586 Papaver somniferum HOM05D005218 ORTHO05D006657 4.8e-137 491.9 377 62.3
HanXRQChr14g0445831 Helianthus annuus HOM05D005218 ORTHO05D006657 6.3e-137 491.5 383 64.2
CDE06G0216 Ceratophyllum demersum HOM05D005218 ORTHO05D006657 1.4e-136 490.3 379 63.3
MELO3C025278.2 Cucumis melo HOM05D005218 ORTHO05D006657 1.4e-136 490.3 379 64.9
Psat2g191240 Pisum sativum HOM05D005218 ORTHO05D006657 1.4e-136 490.3 362 68.2
Sabra04G0159600 Salix brachista HOM05D005218 ORTHO05D006657 2.4e-136 489.6 384 66.1
ClCG04G005100 Citrullus lanatus HOM05D005218 ORTHO05D006657 4.1e-136 488.8 379 64.4
BraA03t09386Z Brassica rapa HOM05D005218 ORTHO05D006657 7.0e-136 488.0 398 62.3
BraA02t04669Z Brassica rapa HOM05D005218 ORTHO05D006657 5.9e-135 485.0 424 58.7
SGA_v2.0_scaffold85G26585 Striga asiatica HOM05D005218 ORTHO05D006657 2.5e-133 479.6 470 53.4
Zm00001eb284640 Zea mays HOM05D005218 ORTHO05D006657 4.2e-133 478.8 379 62.5
BolC2t05996H Brassica oleracea HOM05D005218 ORTHO05D006657 1.4e-131 473.8 362 65.7
FAN05G1148 Fragaria x ananassa HOM05D005218 ORTHO05D006657 4.0e-131 472.2 385 63.1
Os05g0306000 Oryza sativa ssp. japonica HOM05D005218 ORTHO05D006657 4.4e-130 468.8 381 62.5
Lsat_1_v5_gn_5_153501 Lactuca sativa HOM05D005218 ORTHO05D006657 1.3e-129 467.2 383 61.6
PSO339G0748 Papaver somniferum HOM05D005218 ORTHO05D006657 3.7e-129 465.7 391 59.3
DCAR_023955 Daucus carota HOM05D005218 ORTHO05D006657 1.1e-128 464.2 459 53.4
QL07p030634 Quercus lobata HOM05D005218 ORTHO05D006657 3.0e-123 446.0 300 72.3
Haze_21230 Corylus avellana HOM05D005218 ORTHO05D006657 2.6e-122 443.0 380 60.5
BolC3t12584H Brassica oleracea HOM05D005218 ORTHO05D006657 3.8e-118 429.1 339 64.3
FAN09G2324 Fragaria x ananassa HOM05D005218 ORTHO05D006657 1.9e-117 426.8 319 66.1
Oeu027654.1 Olea europaea HOM05D005218 ORTHO05D006657 1.4e-115 420.6 295 69.2
Sabra04G0159700 Salix brachista HOM05D005218 ORTHO05D006657 1.4e-115 420.6 369 61.2
TPR.G30733 Trifolium pratense HOM05D005218 ORTHO05D006657 9.8e-114 414.5 300 68.7
AagrBONN_evm.TU.Sc2ySwM_228.4747 Anthoceros agrestis HOM05D005218 ORTHO05D006657 7.7e-111 404.8 383 54.6
vmacro08964 Vaccinium macrocarpon HOM05D005218 ORTHO05D006657 2.1e-108 396.7 520 44.6
Mapoly0045s0012 Marchantia polymorpha HOM05D005218 ORTHO05D006657 2.0e-103 380.2 378 50.8
SMO198G0089 Selaginella moellendorffii HOM05D005218 ORTHO05D006657 2.0e-98 363.6 379 48.5
BcaB01g06128 Brassica carinata HOM05D005218 ORTHO05D006657 3.6e-92 342.8 299 59.2
AUR62006464 Chenopodium quinoa HOM05D005218 ORTHO05D006657 1.4e-91 340.9 219 77.6
CBR_g279 Chara braunii HOM05D005218 ORTHO05D006657 2.9e-89 333.2 378 47.9
Cpa.g.sc1919.1 Carica papaya HOM05D005218 ORTHO05D006657 1.7e-86 323.9 223 71.3
MBI03_g45858_MAGBIO Magnolia biondii HOM05D005218 ORTHO05D006657 4.3e-85 319.3 248 65.3
Pp3c6_1360 Physcomitrium patens HOM05D005218 ORTHO05D006657 8.6e-78 295.0 295 51.5
RcHm_v2.0_Chr4g0423451 Rosa chinensis HOM05D005218 ORTHO05D006657 2.7e-71 273.5 237 61.2
CiPaw.09G224300 Carya illinoinensis HOM05D005218 ORTHO05D006657 7.3e-69 265.4 161 80.7
RcHm_v2.0_Chr2g0142661 Rosa chinensis HOM05D005218 ORTHO05D006657 3.5e-63 246.5 283 49.1
RcHm_v2.0_Chr3g0481991 Rosa chinensis HOM05D005218 ORTHO05D006657 2.5e-61 240.4 215 59.1
PRCOL_00004779 Prasinoderma coloniale HOM05D005218 ORTHO05D006657 2.9e-57 226.9 381 33.9
SEGI_33787 Sequoiadendron giganteum HOM05D005218 ORTHO05D006657 2.7e-55 220.3 159 67.3
AUR62029820 Chenopodium quinoa HOM05D005218 ORTHO05D006657 7.9e-55 218.8 139 77.7
Actinidia32581 Actinidia chinensis HOM05D005218 ORTHO05D006657 8.1e-52 208.8 153 66.0
CDE07G0921 Ceratophyllum demersum HOM05D005218 ORTHO05D006657 7.6e-50 202.2 133 75.9
CiPaw.09G224400 Carya illinoinensis HOM05D005218 ORTHO05D006657 2.3e-46 190.7 140 67.1
Cre02.g117950 Chlamydomonas reinhardtii HOM05D005218 ORTHO05D006657 8.2e-44 182.2 320 35.0
CDE07G0273 Ceratophyllum demersum HOM05D005218 ORTHO05D006657 4.3e-37 159.8 149 53.0
A07p02820 Brassica napus HOM05D005218 ORTHO05D006657 2.2e-33 147.5 200 46.5
BraA07t28080Z Brassica rapa HOM05D005218 ORTHO05D006657 6.5e-33 146.0 193 47.2
RcHm_v2.0_Chr3g0494831 Rosa chinensis HOM05D005218 ORTHO05D006657 2.2e-28 131.0 112 54.5
Actinidia35793 Actinidia chinensis HOM05D005218 ORTHO05D006657 5.0e-25 119.8 80 67.5
CDE07G0892 Ceratophyllum demersum HOM05D005218 ORTHO05D006657 5.0e-25 119.8 120 49.2
Sabra12G0043200 Salix brachista HOM05D005218 ORTHO05D006657 7.9e-23 112.5 146 49.3
Lsat_1_v5_gn_8_105921 Lactuca sativa HOM05D005218 ORTHO05D002018 2.2e-17 94.4 79 54.4
SEGI_25208 Sequoiadendron giganteum HOM05D005218 ORTHO05D006657 7.2e-16 89.4 85 47.1
Lsat_1_v5_gn_5_172481 Lactuca sativa HOM05D001702 ORTHO05D001791 7.0e-11 72.8 71 50.7
BcaB01g06129 Brassica carinata HOM05D005218 ORTHO05D006657 5.9e-10 69.7 54 64.8
MBI07_g27400_MAGBIO Magnolia biondii HOM05D005218 ORTHO05D006657 2.2e-09 67.8 47 68.1
Duzib151G1109 Durio zibethinus HOM05D005218 ORTHO05D000596 3.8e-09 67.0 44 68.2
CDE07G1760 Ceratophyllum demersum HOM05D005218 ORTHO05D006657 9.4e-08 62.4 41 65.9


User provided reference genes

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