Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc01g0010620 Simmondsia chinensis HOM05D007016 ORTHO05D008847 8.6e-140 500.4 261 100.0
Dinv12013 Davidia involucrata HOM05D007016 ORTHO05D008847 2.3e-68 263.1 257 58.0
Dinv34693 Davidia involucrata HOM05D007016 ORTHO05D008847 6.7e-68 261.5 257 56.4
Actinidia22202 Actinidia chinensis HOM05D007016 ORTHO05D008847 5.7e-67 258.5 256 56.2
Rhsim02G0251600 Rhododendron simsii HOM05D007016 ORTHO05D008847 7.0e-65 251.5 259 56.0
Manes.02G003500 Manihot esculenta HOM05D007016 ORTHO05D008847 2.5e-62 243.0 246 52.4
Haze_14080 Corylus avellana HOM05D007016 ORTHO05D008847 2.1e-61 240.0 246 54.9
Cfa011932 Carpinus fangiana HOM05D007016 ORTHO05D008847 8.0e-61 238.0 241 55.6
AUR62007045 Chenopodium quinoa HOM05D007016 ORTHO05D008847 1.4e-60 237.3 264 53.0
Nitab4.5_0004251g0050 Nicotiana tabacum HOM05D007016 ORTHO05D008847 2.0e-59 233.4 259 51.7
Ciclev10021806m.g Citrus clementina HOM05D007016 ORTHO05D008847 2.6e-59 233.0 257 51.4
vmacro11507 Vaccinium macrocarpon HOM05D007016 ORTHO05D008847 2.6e-59 233.0 256 52.0
PGR031G1249 Punica granatum HOM05D007016 ORTHO05D008847 5.7e-59 231.9 244 55.7
Oeu022037.1 Olea europaea HOM05D007016 ORTHO05D008847 7.5e-59 231.5 249 52.6
TAR375G0929 Trochodendron aralioides HOM05D007016 ORTHO05D008847 9.7e-59 231.1 241 53.1
Eucgr.D01686 Eucalyptus grandis HOM05D007016 ORTHO05D008847 1.7e-58 230.3 224 56.7
CiPaw.12G078100 Carya illinoinensis HOM05D007016 ORTHO05D008847 3.7e-58 229.2 246 52.0
Thecc.03G221900 Theobroma cacao HOM05D007016 ORTHO05D008847 3.7e-58 229.2 238 52.1
GSVIVG01019642001 Vitis vinifera HOM05D007016 ORTHO05D008847 3.7e-58 229.2 250 52.0
QL02p028324 Quercus lobata HOM05D007016 ORTHO05D008847 4.8e-58 228.8 208 54.8
Peaxi162Scf00074g00350 Petunia axillaris HOM05D000458 ORTHO05D000951 8.2e-58 228.0 243 54.7
Potri.003G146100 Populus trichocarpa HOM05D007016 ORTHO05D008847 8.2e-58 228.0 260 46.9
Sabra03G0106200 Salix brachista HOM05D007016 ORTHO05D008847 8.2e-58 228.0 246 49.2
MD14G1125100 Malus domestica HOM05D007016 ORTHO05D008847 1.1e-57 227.6 255 51.0
Duzib205G1809 Durio zibethinus HOM05D007016 ORTHO05D008847 2.4e-57 226.5 255 50.6
Prupe.5G128800 Prunus persica HOM05D007016 ORTHO05D008847 9.1e-57 224.6 251 52.6
Duzib084G0025 Durio zibethinus HOM05D000458 ORTHO05D000951 1.0e-55 221.1 216 55.1
FAN08G2008 Fragaria x ananassa HOM05D007016 ORTHO05D008847 1.0e-55 221.1 251 50.6
Gorai.003G076500 Gossypium raimondii HOM05D007016 ORTHO05D008847 1.3e-55 220.7 220 51.8
FAN04G1313 Fragaria x ananassa HOM05D007016 ORTHO05D008847 2.2e-55 219.9 205 56.1
EL10Ac5g12439 Beta vulgaris HOM05D007016 ORTHO05D008847 1.1e-54 217.6 266 49.6
Sed0027229 Sechium edule HOM05D007016 ORTHO05D008847 2.5e-54 216.5 261 49.8
Glyma.01G230300 Glycine max HOM05D007016 ORTHO05D008847 5.5e-54 215.3 209 55.0
ClCG01G001570 Citrullus lanatus HOM05D007016 ORTHO05D008847 9.4e-54 214.5 256 49.6
Atru.chr9.1899 Acer truncatum HOM05D007016 ORTHO05D008847 2.7e-53 213.0 207 54.6
Cc08_g16690 Coffea canephora HOM05D007016 ORTHO05D008847 2.7e-53 213.0 264 48.9
HanXRQChr06g0166831 Helianthus annuus HOM05D007016 ORTHO05D008847 2.7e-53 213.0 219 50.7
VMungo1215G3083 Vigna mungo HOM05D007016 ORTHO05D008847 3.6e-53 212.6 262 47.7
MBI04_g33411_MAGBIO Magnolia biondii HOM05D007016 ORTHO05D008847 6.1e-53 211.8 241 49.0
Nitab4.5_0007063g0030 Nicotiana tabacum HOM05D007016 ORTHO05D008847 1.8e-52 210.3 300 44.7
TWI15G0571 Tripterygium wilfordii HOM05D007016 ORTHO05D008847 3.0e-52 209.5 248 48.8
Migut.O00796 Erythranthe guttata HOM05D007016 ORTHO05D008847 5.2e-52 208.8 262 48.9
PSO339G2192 Papaver somniferum HOM05D007016 ORTHO05D008847 5.2e-52 208.8 244 52.9
Phvul.002G036800 Phaseolus vulgaris HOM05D007016 ORTHO05D008847 5.2e-52 208.8 208 51.9
Aqoxy5G04260 Aquilegia oxysepala HOM05D007016 ORTHO05D008847 6.8e-52 208.4 258 48.4
ATR0620G109 Amborella trichopoda HOM05D007016 ORTHO05D008847 8.8e-52 208.0 260 46.2
MD06G1117700 Malus domestica HOM05D007016 ORTHO05D008847 8.8e-52 208.0 223 54.7
PSO339G4063 Papaver somniferum HOM05D007016 ORTHO05D008847 8.8e-52 208.0 244 52.9
COL.COLO4_10789 Corchorus olitorius HOM05D000458 ORTHO05D000951 1.2e-51 207.6 233 51.1
CsaV3_5G001730 Cucumis sativus L. HOM05D007016 ORTHO05D008847 3.4e-51 206.1 259 48.6
Ah.07g197890 Amaranthus hybridus HOM05D007016 ORTHO05D008847 4.4e-51 205.7 256 47.3
ECA246G5308 Erigeron canadensis HOM05D007016 ORTHO05D008847 4.4e-51 205.7 221 49.3
FvH4_5g11000 Fragaria vesca HOM05D007016 ORTHO05D008847 4.4e-51 205.7 247 49.8
Ca_24467_v3 Cicer arietinum L. HOM05D007016 ORTHO05D008847 5.7e-51 205.3 212 53.8
arahy.Tifrunner.gnm1.ann1.6JL1AX Arachis hypogaea HOM05D007016 ORTHO05D008847 1.7e-50 203.8 219 50.7
Haze_09158 Corylus avellana HOM05D007016 ORTHO05D008847 1.7e-50 203.8 265 48.3
DCAR_006538 Daucus carota HOM05D007016 ORTHO05D008847 2.8e-50 203.0 207 54.1
Potri.001G084600 Populus trichocarpa HOM05D007016 ORTHO05D008847 4.8e-50 202.2 197 53.3
Medtr5g008220 Medicago truncatula HOM05D007016 ORTHO05D008847 1.4e-49 200.7 254 46.1
TWI81G0911 Tripterygium wilfordii HOM05D007016 ORTHO05D008847 2.4e-49 199.9 245 48.2
arahy.Tifrunner.gnm1.ann1.CXQL6Y Arachis hypogaea HOM05D007016 ORTHO05D008847 4.1e-49 199.1 260 46.2
RcHm_v2.0_Chr7g0186811 Rosa chinensis HOM05D007016 ORTHO05D008847 5.4e-49 198.7 249 46.6
Haze_09164 Corylus avellana HOM05D007016 ORTHO05D008847 7.0e-49 198.4 265 47.9
BraA07t29790Z Brassica rapa HOM05D003273 ORTHO05D004023 3.5e-48 196.1 190 57.4
PGSC0003DMG400012122 Solanum tuberosum HOM05D007016 ORTHO05D008847 1.7e-47 193.7 258 46.5
A07p21030 Brassica napus HOM05D003273 ORTHO05D004023 2.2e-47 193.4 185 56.2
SGA_v2.0_scaffold314G48366 Striga asiatica HOM05D007016 ORTHO05D008847 2.2e-47 193.4 247 47.8
AL7G47260 Arabidopsis lyrata HOM05D007016 ORTHO05D008847 2.9e-47 193.0 209 54.5
THA.LOC104809306 Tarenaya hassleriana HOM05D007016 ORTHO05D008847 6.5e-47 191.8 214 50.5
Lsat_1_v5_gn_3_13941 Lactuca sativa HOM05D007016 ORTHO05D008847 1.5e-46 190.7 266 44.4
MELO3C005780.2 Cucumis melo HOM05D007016 ORTHO05D008847 1.9e-46 190.3 213 51.6
LjContig00222g0018079 Lotus japonicus HOM05D007016 ORTHO05D008847 2.5e-46 189.9 186 54.3
Cpa.g.sc175.19 Carica papaya HOM05D007016 ORTHO05D008847 3.2e-46 189.5 187 52.9
Gohir.A02G097900 Gossypium hirsutum HOM05D007016 ORTHO05D008847 3.2e-46 189.5 256 43.8
Zm00001eb428160 Zea mays HOM05D007016 ORTHO05D008847 3.2e-46 189.5 249 45.0
Carub.0007s3342 Capsella rubella HOM05D007016 ORTHO05D008847 4.2e-46 189.1 198 52.5
Sp7g00170 Schrenkiella parvula HOM05D007016 ORTHO05D008847 4.2e-46 189.1 167 60.5
CARHR212600 Cardamine hirsuta HOM05D007016 ORTHO05D008847 5.5e-46 188.7 169 57.4
AT5G41960 Arabidopsis thaliana HOM05D007016 ORTHO05D008847 2.1e-45 186.8 169 58.0
AUR62019909 Chenopodium quinoa HOM05D007016 ORTHO05D008847 2.1e-45 186.8 261 46.7
FAN18G1330 Fragaria x ananassa HOM05D007016 ORTHO05D008847 2.1e-45 186.8 285 43.2
C04p49340 Brassica napus HOM05D003273 ORTHO05D005100 6.1e-45 185.3 179 52.5
BolC4t26521H Brassica oleracea HOM05D003273 ORTHO05D004023 6.1e-45 185.3 179 52.5
Thhalv10027936m.g Eutrema salsugineum HOM05D007016 ORTHO05D008847 8.0e-45 184.9 219 50.2
BcaC08g44572 Brassica carinata HOM05D003273 ORTHO05D004023 1.8e-44 183.7 185 55.1
Nn3g18888 Nelumbo nucifera HOM05D007016 ORTHO05D008847 2.3e-44 183.3 302 42.1
A04p15110 Brassica napus HOM05D003273 ORTHO05D005100 3.0e-44 183.0 180 52.8
Sopen08g031240 Solanum pennellii HOM05D007016 ORTHO05D008847 3.0e-44 183.0 261 46.4
BraA04t17152Z Brassica rapa HOM05D003273 ORTHO05D005100 4.0e-44 182.6 180 52.8
BcaB06g27684 Brassica carinata HOM05D003273 ORTHO05D004023 6.8e-44 181.8 186 52.7
C06p20380 Brassica napus HOM05D003273 ORTHO05D004023 6.8e-44 181.8 187 56.1
Solyc08g083030.4 Solanum lycopersicum HOM05D007016 ORTHO05D008847 6.8e-44 181.8 258 45.3
FAN13G1076 Fragaria x ananassa HOM05D007016 ORTHO05D008847 1.2e-43 181.0 195 51.8
Gohir.D03G085700 Gossypium hirsutum HOM05D007016 ORTHO05D008847 1.5e-43 180.6 220 45.5
Aa31LG9G230 Aethionema arabicum HOM05D007016 ORTHO05D008847 2.0e-43 180.3 244 44.7
BcaC02g08900 Brassica carinata HOM05D003273 ORTHO05D004023 2.0e-43 180.3 205 50.2
Os04g0585600 Oryza sativa ssp. japonica HOM05D007016 ORTHO05D008847 1.7e-42 177.2 203 46.3
Lsat_1_v5_gn_3_14061 Lactuca sativa HOM05D007016 ORTHO05D008847 6.3e-42 175.3 236 43.6
Lalb_Chr09g0320381 Lupinus albus HOM05D007016 ORTHO05D008847 8.3e-42 174.9 254 42.9
HanXRQChr17g0534751 Helianthus annuus HOM05D007016 ORTHO05D008847 1.1e-41 174.5 196 52.0
SEGI_36842 Sequoiadendron giganteum HOM05D007016 ORTHO05D008847 1.1e-41 174.5 221 44.8
HPP92_022341 Vanilla planifolia HOM05D007016 ORTHO05D008847 1.1e-41 174.5 197 50.3
HPP92_022355 Vanilla planifolia HOM05D007016 ORTHO05D008847 1.1e-41 174.5 197 50.3
TPR.G38026 Trifolium pratense HOM05D007016 ORTHO05D008847 1.8e-41 173.7 182 49.5
CAN.G567.80 Capsicum annuum HOM05D007016 ORTHO05D008847 3.5e-40 169.5 254 44.1
MSTRG.15575 Avicennia marina HOM05D007016 ORTHO05D008847 4.3e-38 162.5 269 42.0
Pp3c14_22240 Physcomitrium patens HOM05D007016 ORTHO05D008847 1.5e-35 154.1 134 56.7
unitig_62.g23644 Utricularia gibba HOM05D007016 ORTHO05D008847 6.4e-34 148.7 220 39.5
BolC6t37216H Brassica oleracea HOM05D007016 ORTHO05D008847 1.6e-32 144.1 189 47.6
AagrBONN_evm.TU.Sc2ySwM_117.1459 Anthoceros agrestis HOM05D007016 ORTHO05D008847 2.0e-32 143.7 165 46.1
Mapoly0080s0071 Marchantia polymorpha HOM05D007016 ORTHO05D008847 2.0e-32 143.7 180 43.9
CSS0028177 Camellia sinensis var. sinensis HOM05D007016 ORTHO05D008847 4.6e-32 142.5 255 38.0
SMO164G0130 Selaginella moellendorffii HOM05D007016 ORTHO05D008847 7.8e-32 141.7 116 56.0
MD16G1274000 Malus domestica HOM05D007016 ORTHO05D008847 4.3e-30 136.0 94 67.0
CDE07G1000 Ceratophyllum demersum HOM05D007016 ORTHO05D008847 5.8e-27 125.6 136 47.8
Psat2g187480 Pisum sativum HOM05D007016 ORTHO05D008847 5.8e-27 125.6 107 54.2
CBR_g26222 Chara braunii HOM05D007016 ORTHO05D008847 3.7e-26 122.9 153 47.7
CANSAT21G1603 Cannabis sativa HOM05D007016 ORTHO05D008847 4.9e-26 122.5 256 37.5
Nitab4.5_0000051g0070 Nicotiana tabacum HOM05D007016 ORTHO05D008847 4.1e-25 119.4 165 46.1
SEGI_07436 Sequoiadendron giganteum HOM05D007016 ORTHO05D008847 3.5e-24 116.3 99 58.6
arahy.Tifrunner.gnm1.ann1.PIY4C5 Arachis hypogaea HOM05D007016 ORTHO05D008847 1.7e-23 114.0 87 60.9
Hund14199 Selenicereus undatus HOM05D007016 ORTHO05D008847 6.8e-20 102.1 118 50.0
arahy.Tifrunner.gnm1.ann1.HM96ZH Arachis hypogaea HOM05D007016 ORTHO05D008847 2.8e-13 80.1 117 42.7


User provided reference genes

Program Settings