Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc01g0010610 Simmondsia chinensis HOM05D006904 ORTHO05D008439 1.4e-163 579.7 319 100.0
Ah.12g053150 Amaranthus hybridus HOM05D006904 ORTHO05D008439 2.2e-84 316.6 269 67.7
EL10Ac5g12440 Beta vulgaris HOM05D006904 ORTHO05D008439 3.1e-83 312.8 321 57.6
Sopen08g031220 Solanum pennellii HOM05D006904 ORTHO05D008439 2.6e-82 309.7 299 62.2
Aqoxy5G04256 Aquilegia oxysepala HOM05D006904 ORTHO05D008439 7.7e-82 308.1 266 63.2
PGSC0003DMG400012243 Solanum tuberosum HOM05D006904 ORTHO05D008439 1.3e-81 307.4 256 68.4
Solyc08g083010.3 Solanum lycopersicum HOM05D006904 ORTHO05D008439 1.7e-81 307.0 299 61.9
Potri.001G084500 Populus trichocarpa HOM05D006904 ORTHO05D008439 6.5e-81 305.1 297 59.3
CAN.G567.78 Capsicum annuum HOM05D006904 ORTHO05D008439 1.1e-80 304.3 307 59.3
COL.COLO4_10787 Corchorus olitorius HOM05D006904 ORTHO05D008439 2.5e-80 303.1 314 59.2
Hund11354 Selenicereus undatus HOM05D006904 ORTHO05D008439 4.2e-80 302.4 310 59.0
Ciclev10021179m.g Citrus clementina HOM05D006904 ORTHO05D008439 2.7e-79 299.7 282 60.6
TAR629G0561 Trochodendron aralioides HOM05D006904 ORTHO05D008439 1.0e-78 297.7 317 56.5
vmacro11509 Vaccinium macrocarpon HOM05D006904 ORTHO05D008439 5.1e-78 295.4 321 54.8
Nitab4.5_0004251g0070 Nicotiana tabacum HOM05D006904 ORTHO05D008439 6.7e-78 295.0 261 64.0
Rhsim02G0251400 Rhododendron simsii HOM05D006904 ORTHO05D008439 2.0e-77 293.5 309 57.0
Thecc.03G222200 Theobroma cacao HOM05D006904 ORTHO05D008439 2.0e-77 293.5 307 57.3
QL02p029228 Quercus lobata HOM05D006904 ORTHO05D008439 5.7e-77 292.0 300 58.3
AUR62007044 Chenopodium quinoa HOM05D006904 ORTHO05D008439 4.8e-76 288.9 284 59.9
Gohir.D12G240700 Gossypium hirsutum HOM05D006904 ORTHO05D008439 8.2e-76 288.1 282 60.3
Gorai.008G257800 Gossypium raimondii HOM05D006904 ORTHO05D008439 8.2e-76 288.1 282 60.3
MSTRG.24864 Avicennia marina HOM05D006904 ORTHO05D008439 1.4e-75 287.3 315 54.6
Cfa011933 Carpinus fangiana HOM05D006904 ORTHO05D008439 1.8e-75 287.0 261 62.1
MBI04_g44912_MAGBIO Magnolia biondii HOM05D006904 ORTHO05D008439 2.4e-75 286.6 303 54.1
MD06G1117600 Malus domestica HOM05D006904 ORTHO05D008439 4.1e-75 285.8 272 60.7
Gohir.A12G239500 Gossypium hirsutum HOM05D006904 ORTHO05D008439 5.3e-75 285.4 282 59.9
Haze_09163 Corylus avellana HOM05D006904 ORTHO05D008439 4.5e-74 282.3 318 54.1
MD14G1125000 Malus domestica HOM05D006904 ORTHO05D008439 5.9e-74 282.0 271 60.5
Haze_09157 Corylus avellana HOM05D006904 ORTHO05D008439 1.0e-73 281.2 322 54.3
Atru.chr9.1900 Acer truncatum HOM05D006904 ORTHO05D008439 2.2e-73 280.0 242 64.5
THA.LOC104813055 Tarenaya hassleriana HOM05D006904 ORTHO05D008439 2.2e-73 280.0 269 59.9
CSS0028351 Camellia sinensis var. sinensis HOM05D006904 ORTHO05D008439 3.8e-73 279.3 326 54.0
Dinv02287 Davidia involucrata HOM05D006904 ORTHO05D008439 5.0e-73 278.9 276 62.0
Actinidia04169 Actinidia chinensis HOM05D006904 ORTHO05D008439 6.5e-73 278.5 328 52.4
TWI81G0826 Tripterygium wilfordii HOM05D006904 ORTHO05D008439 4.2e-72 275.8 300 53.0
Sabra01G0061300 Salix brachista HOM05D006904 ORTHO05D008439 2.7e-71 273.1 319 52.7
GSVIVG01019640001 Vitis vinifera HOM05D006904 ORTHO05D008439 3.6e-71 272.7 315 54.0
ECA233G3570 Erigeron canadensis HOM05D006904 ORTHO05D008439 4.7e-71 272.3 259 58.7
Oeu010740.1 Olea europaea HOM05D006904 ORTHO05D008439 1.4e-70 270.8 244 62.3
PSO675G2501 Papaver somniferum HOM05D006904 ORTHO05D008439 3.9e-70 269.2 276 54.3
HanXRQChr07g0192161 Helianthus annuus HOM05D006904 ORTHO05D008439 5.1e-70 268.9 275 57.8
Prupe.5G128700 Prunus persica HOM05D006904 ORTHO05D008439 5.1e-70 268.9 275 57.8
RcHm_v2.0_Chr7g0186801 Rosa chinensis HOM05D006904 ORTHO05D008439 5.1e-70 268.9 300 55.3
Hma1.2p1_0456F.1_g156570 Hydrangea macrophylla HOM05D006904 ORTHO05D008439 8.8e-70 268.1 252 61.9
Lj8A201G80 Lonicera japonica HOM05D006904 ORTHO05D008439 8.8e-70 268.1 250 58.8
SGA_v2.0_scaffold104G30265 Striga asiatica HOM05D006904 ORTHO05D008439 8.8e-70 268.1 267 62.5
Nitab4.5_0007063g0060 Nicotiana tabacum HOM05D006904 ORTHO05D008439 2.0e-69 266.9 261 61.3
MBI04_g21743_MAGBIO Magnolia biondii HOM05D006904 ORTHO05D008439 3.3e-69 266.2 252 59.1
Ca_13963_v3 Cicer arietinum L. HOM05D006904 ORTHO05D008439 2.8e-68 263.1 274 54.4
BcaNung01113 Brassica carinata HOM05D006904 ORTHO05D008439 1.1e-67 261.2 304 51.3
Glyma.09G286200 Glycine max HOM05D006904 ORTHO05D008439 1.4e-67 260.8 259 54.1
arahy.Tifrunner.gnm1.ann1.U3Q9D7 Arachis hypogaea HOM05D006904 ORTHO05D008439 2.4e-67 260.0 260 55.4
Migut.A01096 Erythranthe guttata HOM05D006904 ORTHO05D008439 5.3e-67 258.8 323 50.8
Eucgr.E01035 Eucalyptus grandis HOM05D006904 ORTHO05D008439 5.3e-67 258.8 276 57.6
Lj2g0027548 Lotus japonicus HOM05D006904 ORTHO05D008439 5.3e-67 258.8 259 56.0
AT4G24090 Arabidopsis thaliana HOM05D006904 ORTHO05D008439 9.1e-67 258.1 295 55.6
PSO541G0496 Papaver somniferum HOM05D006904 ORTHO05D008439 9.1e-67 258.1 294 52.0
Carub.0007s1701 Capsella rubella HOM05D006904 ORTHO05D008439 4.5e-66 255.8 305 52.5
AL7G29200 Arabidopsis lyrata HOM05D006904 ORTHO05D008439 2.2e-65 253.4 289 53.6
Thhalv10025762m.g Eutrema salsugineum HOM05D006904 ORTHO05D008439 2.2e-65 253.4 296 52.4
FAN04G1837 Fragaria x ananassa HOM05D006904 ORTHO05D008439 2.2e-65 253.4 268 58.6
Cc08_g16680 Coffea canephora HOM05D006904 ORTHO05D008439 2.9e-65 253.1 319 50.8
Duzib205G0314 Durio zibethinus HOM05D006904 ORTHO05D008439 5.0e-65 252.3 321 53.0
Medtr3g005290 Medicago truncatula HOM05D006904 ORTHO05D008439 8.5e-65 251.5 272 52.9
ClCG10G000840 Citrullus lanatus HOM05D006904 ORTHO05D008439 1.9e-64 250.4 272 55.1
arahy.Tifrunner.gnm1.ann1.NJ37M5 Arachis hypogaea HOM05D006904 ORTHO05D008439 2.5e-64 250.0 276 52.5
A01p15360 Brassica napus HOM05D000458 ORTHO05D000951 4.2e-64 249.2 273 54.6
BcaC09g50912 Brassica carinata HOM05D006904 ORTHO05D008439 5.5e-64 248.8 299 51.2
C01p19310 Brassica napus HOM05D000458 ORTHO05D000951 5.5e-64 248.8 299 51.2
BolC1t01857H Brassica oleracea HOM05D000458 ORTHO05D000951 5.5e-64 248.8 299 51.2
Phvul.002G333700 Phaseolus vulgaris HOM05D006904 ORTHO05D008439 9.4e-64 248.1 259 52.9
BraA01t01480Z Brassica rapa HOM05D006904 ORTHO05D008439 1.6e-63 247.3 299 51.2
CiPaw.12G078200 Carya illinoinensis HOM05D006904 ORTHO05D008439 3.6e-63 246.1 315 51.4
Psat1g000400 Pisum sativum HOM05D006904 ORTHO05D008439 4.7e-63 245.7 263 52.5
Aa31LG6G7300 Aethionema arabicum HOM05D006904 ORTHO05D008439 6.1e-63 245.4 253 56.5
VMungo1309G0432 Vigna mungo HOM05D006904 ORTHO05D008439 1.0e-62 244.6 302 48.3
Lsat_1_v5_gn_6_9180 Lactuca sativa HOM05D000482 ORTHO05D000349 1.4e-62 244.2 264 55.3
Peaxi162Scf00074g00356 Petunia axillaris HOM05D006904 ORTHO05D008439 1.8e-62 243.8 296 51.4
FvH4_5g11010 Fragaria vesca HOM05D006904 ORTHO05D008439 3.0e-62 243.0 275 55.3
FAN18G2239 Fragaria x ananassa HOM05D006904 ORTHO05D008439 3.0e-62 243.0 275 55.3
FAN13G1638 Fragaria x ananassa HOM05D006904 ORTHO05D008439 6.7e-62 241.9 275 54.9
TPR.G25509 Trifolium pratense HOM05D006904 ORTHO05D008439 8.8e-62 241.5 250 55.2
CDE09G0165 Ceratophyllum demersum HOM05D006904 ORTHO05D008439 1.1e-59 234.6 267 49.4
Sp7g22050 Schrenkiella parvula HOM05D006904 ORTHO05D008439 1.1e-59 234.6 300 50.0
ATR0620G017 Amborella trichopoda HOM05D006904 ORTHO05D008439 5.9e-58 228.8 269 51.3
AUR62019908 Chenopodium quinoa HOM05D006904 ORTHO05D008439 1.0e-57 228.0 282 52.8
DCAR_006536 Daucus carota HOM05D006904 ORTHO05D008439 1.5e-56 224.2 243 54.3
Sed0025618 Sechium edule HOM05D006904 ORTHO05D008439 1.9e-56 223.8 232 58.6
CDE11G0025 Ceratophyllum demersum HOM05D006904 ORTHO05D008439 2.7e-55 219.9 267 47.9
PGR042G3610 Punica granatum HOM05D006904 ORTHO05D008439 3.6e-55 219.5 304 49.0
CANSAT21G0222 Cannabis sativa HOM05D006904 ORTHO05D008439 1.3e-52 211.1 316 45.3
MELO3C013778.2 Cucumis melo HOM05D006904 ORTHO05D008439 1.3e-52 211.1 316 46.5
CsaV3_3G000910 Cucumis sativus L. HOM05D006904 ORTHO05D008439 1.3e-52 211.1 316 46.5
HPP92_025869 Vanilla planifolia HOM05D006904 ORTHO05D008439 3.1e-51 206.5 269 50.2
SalBow8G2695 Salvia bowleyana HOM05D006904 ORTHO05D008439 2.7e-50 203.4 268 50.4
Haze_16434 Corylus avellana HOM05D006904 ORTHO05D008439 2.1e-47 193.7 207 55.6
unitig_88.g27646 Utricularia gibba HOM05D006904 ORTHO05D008439 5.4e-43 179.1 236 47.9
Haze_14079 Corylus avellana HOM05D006904 ORTHO05D008439 4.5e-42 176.0 231 50.2
CARHR231490 Cardamine hirsuta HOM05D006904 ORTHO05D008439 5.9e-42 175.6 184 55.4
Manes.02G003600 Manihot esculenta HOM05D006904 ORTHO05D008439 1.0e-41 174.9 232 52.2
Aqoxy5G04252 Aquilegia oxysepala HOM05D006904 ORTHO05D008439 1.2e-39 167.9 158 62.0
Os09g0529350 Oryza sativa ssp. japonica HOM05D006904 ORTHO05D008439 1.8e-38 164.1 196 50.0
ECA246G4131 Erigeron canadensis HOM05D006904 ORTHO05D008439 8.3e-36 155.2 235 43.4
Lsat_1_v5_gn_3_13720 Lactuca sativa HOM05D006904 ORTHO05D008439 4.6e-34 149.4 260 42.7
Cpa.g.sc175.18 Carica papaya HOM05D006904 ORTHO05D008439 5.0e-33 146.0 175 54.3
Zm00001eb319140 Zea mays HOM05D006904 ORTHO05D008439 1.9e-32 144.1 244 44.3
SEGI_29366 Sequoiadendron giganteum HOM05D006904 ORTHO05D008439 5.6e-32 142.5 221 42.5
Pp3c9_20020 Physcomitrium patens HOM05D006904 ORTHO05D008439 4.0e-30 136.3 279 36.6
HanXRQChr06g0166841 Helianthus annuus HOM05D006904 ORTHO05D008439 8.3e-28 128.6 210 40.5
Nn5g30646 Nelumbo nucifera HOM05D006904 ORTHO05D008439 2.3e-25 120.6 113 60.2
Mapoly0033s0090 Marchantia polymorpha HOM05D006904 ORTHO05D008439 9.5e-24 115.2 286 32.2
SMO361G0353 Selaginella moellendorffii HOM05D006904 ORTHO05D008439 5.2e-22 109.4 142 43.7
AagrBONN_evm.TU.Sc2ySwM_228.3172 Anthoceros agrestis HOM05D006904 ORTHO05D008439 2.2e-20 104.0 293 31.7
CBR_g70738 Chara braunii HOM05D006904 ORTHO05D008439 4.6e-18 96.3 155 34.2
QL02p029244 Quercus lobata HOM05D006904 ORTHO05D008439 1.9e-16 90.9 135 43.0
MCO05G331 Micromonas commoda HOM05D006904 ORTHO05D008439 9.5e-16 88.6 300 30.0
BcaC09g50913 Brassica carinata HOM05D006904 ORTHO05D008439 6.8e-14 82.4 122 46.7
AUR62041665 Chenopodium quinoa HOM05D006904 ORTHO05D008439 2.9e-12 77.0 58 65.5
Cre02.g144850 Chlamydomonas reinhardtii HOM05D006904 ORTHO05D008439 1.7e-09 67.8 235 31.5
Aa31LG6G7320 Aethionema arabicum HOM05D003846 ORTHO05D004726 2.4e-06 57.4 137 37.2


User provided reference genes

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