Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc01g0010310 Simmondsia chinensis HOM05D004051 ORTHO05D004480 4.0e-35 151.0 82 100.0
EL10Ac5g12918 Beta vulgaris HOM05D004051 ORTHO05D004480 4.9e-17 90.9 82 64.6
Hund14219 Selenicereus undatus HOM05D004051 ORTHO05D004480 5.5e-16 87.4 73 67.1
Ah.07g197450 Amaranthus hybridus HOM05D004051 ORTHO05D004480 7.9e-15 83.6 77 63.6
Hund11389 Selenicereus undatus HOM05D004051 ORTHO05D004480 1.8e-14 82.4 77 63.6
RcHm_v2.0_Chr7g0194731 Rosa chinensis HOM05D004051 ORTHO05D004480 8.7e-14 80.1 82 58.5
FvH4_5g04640 Fragaria vesca HOM05D004051 ORTHO05D004480 1.1e-13 79.7 82 58.5
FAN18G0508 Fragaria x ananassa HOM05D004051 ORTHO05D004480 1.1e-13 79.7 82 58.5
FAN08G0063 Fragaria x ananassa HOM05D004051 ORTHO05D004480 1.5e-13 79.3 82 58.5
AUR62010843 Chenopodium quinoa HOM05D004051 ORTHO05D004480 2.5e-13 78.6 77 62.3
Gohir.D12G237933 Gossypium hirsutum HOM05D004051 ORTHO05D004480 3.3e-13 78.2 80 62.5
Gorai.008G254600 Gossypium raimondii HOM05D004051 ORTHO05D004480 3.3e-13 78.2 80 62.5
Lalb_Chr05g0224141 Lupinus albus HOM05D004051 ORTHO05D004480 5.7e-13 77.4 80 62.5
CSS0008906 Camellia sinensis var. sinensis HOM05D004051 ORTHO05D004480 9.6e-13 76.6 83 59.0
Manes.02G009700 Manihot esculenta HOM05D004051 ORTHO05D004480 9.6e-13 76.6 83 61.4
Glyma.01G225400 Glycine max HOM05D004051 ORTHO05D004480 1.6e-12 75.9 85 58.8
HanXRQChr03g0083481 Helianthus annuus HOM05D004051 ORTHO05D004480 2.1e-12 75.5 83 55.4
Duzib205G1876 Durio zibethinus HOM05D004051 ORTHO05D004480 2.8e-12 75.1 80 61.2
Actinidia04200 Actinidia chinensis HOM05D004051 ORTHO05D004480 3.7e-12 74.7 83 56.6
Prupe.5G120400 Prunus persica HOM05D004051 ORTHO05D004480 3.7e-12 74.7 83 59.0
CiPaw.11G121000 Carya illinoinensis HOM05D004051 ORTHO05D004480 6.2e-12 73.9 83 56.6
LjContig00312_ERROPOS870357g0027890 Lotus japonicus HOM05D004051 ORTHO05D004480 8.2e-12 73.6 83 60.2
TAR629G1304 Trochodendron aralioides HOM05D004051 ORTHO05D004480 8.2e-12 73.6 85 55.3
Actinidia22162 Actinidia chinensis HOM05D004051 ORTHO05D004480 1.1e-11 73.2 83 55.4
arahy.Tifrunner.gnm1.ann1.T1KBZJ Arachis hypogaea HOM05D004051 ORTHO05D004480 1.4e-11 72.8 80 60.0
Gohir.A12G236600 Gossypium hirsutum HOM05D004051 ORTHO05D004480 1.4e-11 72.8 80 60.0
Dinv38829 Davidia involucrata HOM05D004051 ORTHO05D004480 1.8e-11 72.4 83 56.6
arahy.Tifrunner.gnm1.ann1.E0UY0G Arachis hypogaea HOM05D004051 ORTHO05D004480 2.4e-11 72.0 81 59.3
Psat7g025560 Pisum sativum HOM05D004051 ORTHO05D004480 2.4e-11 72.0 83 55.4
TWI81G0780 Tripterygium wilfordii HOM05D004051 ORTHO05D004480 2.4e-11 72.0 83 57.8
Oeu063517.1 Olea europaea HOM05D004051 ORTHO05D004480 3.1e-11 71.6 85 56.5
Solyc08g008330.3 Solanum lycopersicum HOM05D004051 ORTHO05D004480 3.1e-11 71.6 88 54.5
Sopen08g004210 Solanum pennellii HOM05D004051 ORTHO05D004480 3.1e-11 71.6 88 54.5
Ah.12g052570 Amaranthus hybridus HOM05D000749 ORTHO05D005685 4.0e-11 71.2 76 61.8
Nn1g01872 Nelumbo nucifera HOM05D004051 ORTHO05D004480 4.0e-11 71.2 85 51.8
THA.LOC104815090 Tarenaya hassleriana HOM05D004051 ORTHO05D004480 4.0e-11 71.2 88 55.7
MD06G1107300 Malus domestica HOM05D004051 ORTHO05D004480 5.3e-11 70.9 82 53.7
Potri.003G140300 Populus trichocarpa HOM05D004051 ORTHO05D004480 5.3e-11 70.9 84 56.0
Sopen08g030650 Solanum pennellii HOM05D004051 ORTHO05D004480 5.3e-11 70.9 83 55.4
Dinv37531 Davidia involucrata HOM05D004051 ORTHO05D004480 9.0e-11 70.1 82 53.7
Solyc08g082390.3 Solanum lycopersicum HOM05D004051 ORTHO05D004480 9.0e-11 70.1 83 54.2
Glyma.11G017600 Glycine max HOM05D004051 ORTHO05D004480 1.2e-10 69.7 81 58.0
FAN13G0943 Fragaria x ananassa HOM05D004051 ORTHO05D004480 1.5e-10 69.3 79 54.4
Phvul.002G298100 Phaseolus vulgaris HOM05D004051 ORTHO05D004480 1.5e-10 69.3 82 51.2
GSVIVG01019535001 Vitis vinifera HOM05D004051 ORTHO05D004480 1.5e-10 69.3 85 54.1
CDE09G0659 Ceratophyllum demersum HOM05D004051 ORTHO05D004480 2.0e-10 68.9 83 53.0
Thecc.03G298400 Theobroma cacao HOM05D004051 ORTHO05D004480 2.0e-10 68.9 83 55.4
Eucgr.E00869 Eucalyptus grandis HOM05D004051 ORTHO05D004480 2.6e-10 68.6 79 53.2
Gohir.D12G237800 Gossypium hirsutum HOM05D004051 ORTHO05D004480 2.6e-10 68.6 75 60.0
Peaxi162Scf00102g01842 Petunia axillaris HOM05D004051 ORTHO05D004480 2.6e-10 68.6 82 52.4
TPR.G25572 Trifolium pratense HOM05D004051 ORTHO05D004480 2.6e-10 68.6 80 53.8
CSS0023187 Camellia sinensis var. sinensis HOM05D004051 ORTHO05D004480 3.4e-10 68.2 82 53.7
Migut.A00641 Erythranthe guttata HOM05D004051 ORTHO05D004480 3.4e-10 68.2 89 49.4
FAN18G2387 Fragaria x ananassa HOM05D004051 ORTHO05D004480 3.4e-10 68.2 76 55.3
Gohir.D08G104000 Gossypium hirsutum HOM05D004051 ORTHO05D004480 4.5e-10 67.8 91 48.4
Oeu054023.1 Olea europaea HOM05D004051 ORTHO05D004480 4.5e-10 67.8 78 57.7
Ciclev10023430m.g Citrus clementina HOM05D004051 ORTHO05D004480 5.8e-10 67.4 83 54.2
Sed0004965 Sechium edule HOM05D004051 ORTHO05D004480 5.8e-10 67.4 82 52.4
TWI15G0384 Tripterygium wilfordii HOM05D004051 ORTHO05D004480 5.8e-10 67.4 82 54.9
PGR042G1109 Punica granatum HOM05D004051 ORTHO05D004480 1.3e-09 66.2 80 56.2
CDE02G2345 Ceratophyllum demersum HOM05D004051 ORTHO05D004480 1.7e-09 65.9 77 54.5
Cc08_g16090 Coffea canephora HOM05D004051 ORTHO05D004480 2.2e-09 65.5 83 54.2
Dinv29295 Davidia involucrata HOM05D004051 ORTHO05D004480 2.2e-09 65.5 87 50.6
ECA240G0536 Erigeron canadensis HOM05D004051 ORTHO05D004480 2.2e-09 65.5 83 49.4
Gorai.004G111400 Gossypium raimondii HOM05D004051 ORTHO05D004480 2.9e-09 65.1 91 47.3
BcaNung04241 Brassica carinata HOM05D004051 ORTHO05D004480 3.8e-09 64.7 78 53.8
QL02p030350 Quercus lobata HOM05D004051 ORTHO05D004480 3.8e-09 64.7 80 51.2
Aa31LG6G7140 Aethionema arabicum HOM05D004051 ORTHO05D004480 5.0e-09 64.3 79 51.9
Manes.06G159300 Manihot esculenta HOM05D004051 ORTHO05D004480 6.5e-09 63.9 82 51.2
vmacro11468 Vaccinium macrocarpon HOM05D004051 ORTHO05D004480 6.5e-09 63.9 78 55.1
BcaC09g50935 Brassica carinata HOM05D004051 ORTHO05D004480 1.1e-08 63.2 82 48.8
Sp7g21840 Schrenkiella parvula HOM05D004051 ORTHO05D004480 1.1e-08 63.2 82 51.2
Thhalv10026982m.g Eutrema salsugineum HOM05D004051 ORTHO05D004480 1.4e-08 62.8 82 51.2
PGSC0003DMG400012279 Solanum tuberosum HOM05D004051 ORTHO05D004480 1.4e-08 62.8 83 51.8
SGA_v2.0_scaffold96G29014 Striga asiatica HOM05D004051 ORTHO05D004480 1.4e-08 62.8 83 53.0
AT4G23885 Arabidopsis thaliana HOM05D004051 ORTHO05D004480 1.9e-08 62.4 82 50.0
arahy.Tifrunner.gnm1.ann1.ZDLG37 Arachis hypogaea HOM05D004051 ORTHO05D004480 1.9e-08 62.4 78 55.1
Duzib084G0187 Durio zibethinus HOM05D000749 ORTHO05D005685 1.9e-08 62.4 78 53.8
Lj4g0013283 Lotus japonicus HOM05D004051 ORTHO05D004480 1.9e-08 62.4 78 52.6
Phvul.002G164300 Phaseolus vulgaris HOM05D004051 ORTHO05D004480 1.9e-08 62.4 81 53.1
DCAR_006488 Daucus carota HOM05D004051 ORTHO05D004480 2.5e-08 62.0 77 49.4
Gohir.A08G096024 Gossypium hirsutum HOM05D004051 ORTHO05D004480 2.5e-08 62.0 91 46.2
BcaNung01095 Brassica carinata HOM05D004051 ORTHO05D004480 3.2e-08 61.6 82 50.0
Hund04853 Selenicereus undatus HOM05D004051 ORTHO05D004480 3.2e-08 61.6 82 52.4
BcaNung04081 Brassica carinata HOM05D004051 ORTHO05D004480 4.2e-08 61.2 84 48.8
Hma1.2p1_1461F.1_g285050 Hydrangea macrophylla HOM05D004051 ORTHO05D004480 4.2e-08 61.2 79 51.9
Hma1.2p1_2808F.1_g328863 Hydrangea macrophylla HOM05D004051 ORTHO05D004480 4.2e-08 61.2 79 51.9
MD06G1107200 Malus domestica HOM05D004051 ORTHO05D004480 4.2e-08 61.2 77 49.4
PGSC0003DMG400005791 Solanum tuberosum HOM05D004051 ORTHO05D004480 5.5e-08 60.8 89 49.4
unitig_88.g27640 Utricularia gibba HOM05D004051 ORTHO05D004480 5.5e-08 60.8 81 48.1
VMungo0251G1927 Vigna mungo HOM05D000749 ORTHO05D005685 5.5e-08 60.8 76 48.7
A02p40750 Brassica napus HOM05D004051 ORTHO05D004480 7.1e-08 60.5 83 50.6
CARHR231280 Cardamine hirsuta HOM05D004051 ORTHO05D004480 7.1e-08 60.5 82 47.6
FAN01G1391 Fragaria x ananassa HOM05D004051 ORTHO05D004480 7.1e-08 60.5 80 50.0
Nn3g19011 Nelumbo nucifera HOM05D004051 ORTHO05D004480 7.1e-08 60.5 80 50.0
Potri.012G011600 Populus trichocarpa HOM05D004051 ORTHO05D004480 7.1e-08 60.5 81 46.9
Rhsim09G0205000 Rhododendron simsii HOM05D004051 ORTHO05D004480 7.1e-08 60.5 81 46.9
Actinidia03163 Actinidia chinensis HOM05D004051 ORTHO05D004480 9.3e-08 60.1 85 47.1
AL7G29460 Arabidopsis lyrata HOM05D004051 ORTHO05D004480 9.3e-08 60.1 82 48.8
HanXRQChr13g0415281 Helianthus annuus HOM05D004051 ORTHO05D004480 9.3e-08 60.1 81 49.4
Thecc.03G195700 Theobroma cacao HOM05D004051 ORTHO05D004480 9.3e-08 60.1 89 47.2
Atru.chr9.1978 Acer truncatum HOM05D004051 ORTHO05D004480 1.2e-07 59.7 78 55.1
Atru.chr9.1993 Acer truncatum HOM05D004051 ORTHO05D004480 1.2e-07 59.7 78 55.1
BcaB07g29898 Brassica carinata HOM05D004051 ORTHO05D004480 1.2e-07 59.7 83 49.4
CANSAT21G2574 Cannabis sativa HOM05D004051 ORTHO05D004480 1.2e-07 59.7 83 49.4
CiPaw.05G255100 Carya illinoinensis HOM05D004051 ORTHO05D004480 1.2e-07 59.7 81 50.6
FvH4_7g31780 Fragaria vesca HOM05D004051 ORTHO05D004480 1.2e-07 59.7 80 50.0
CiPaw.05G252200 Carya illinoinensis HOM05D004051 ORTHO05D004480 1.6e-07 59.3 81 50.6
AUR62019374 Chenopodium quinoa HOM05D004051 ORTHO05D004480 2.1e-07 58.9 83 47.0
COL.COLO4_10706 Corchorus olitorius HOM05D004051 ORTHO05D004480 2.7e-07 58.5 79 51.9
PSO063G6907 Papaver somniferum HOM05D004051 ORTHO05D004480 3.5e-07 58.2 79 49.4
Sc13g0009750 Simmondsia chinensis HOM05D004051 ORTHO05D004480 3.5e-07 58.2 78 55.1
Carub.0007s1723 Capsella rubella HOM05D004051 ORTHO05D004480 4.6e-07 57.8 84 48.8
RcHm_v2.0_Chr1g0381011 Rosa chinensis HOM05D004051 ORTHO05D004480 6.1e-07 57.4 80 47.5
CiPaw.05G255500 Carya illinoinensis HOM05D004051 ORTHO05D004480 7.9e-07 57.0 81 49.4
Thhalv10005218m.g Eutrema salsugineum HOM05D004051 ORTHO05D004480 7.9e-07 57.0 83 49.4
Medtr8g099465 Medicago truncatula HOM05D004051 ORTHO05D004480 1.0e-06 56.6 74 50.0
SalBow1G7115 Salvia bowleyana HOM05D004051 ORTHO05D004480 1.0e-06 56.6 82 48.8
BcaNung01808 Brassica carinata HOM05D004051 ORTHO05D004480 1.8e-06 55.8 82 46.3
Sabra03G0101300 Salix brachista HOM05D004051 ORTHO05D004480 1.8e-06 55.8 93 45.2
Sp2g23150 Schrenkiella parvula HOM05D004051 ORTHO05D004480 1.8e-06 55.8 81 46.9
Atru.chr1.148 Acer truncatum HOM05D004051 ORTHO05D004480 2.3e-06 55.5 80 51.2
BcaNung01214 Brassica carinata HOM05D004051 ORTHO05D004480 3.0e-06 55.1 78 50.0
FAN10G0142 Fragaria x ananassa HOM05D004051 ORTHO05D004480 3.9e-06 54.7 79 48.1
QL09p009613 Quercus lobata HOM05D004051 ORTHO05D004480 5.1e-06 54.3 77 48.1
SalBow1G2120 Salvia bowleyana HOM05D004051 ORTHO05D004480 5.1e-06 54.3 82 47.6
AT5G24165 Arabidopsis thaliana HOM05D004051 ORTHO05D004480 6.7e-06 53.9 83 45.8
C07p53180 Brassica napus HOM05D004051 ORTHO05D004480 6.7e-06 53.9 77 46.8
ClCG01G001670 Citrullus lanatus HOM05D004051 ORTHO05D004480 6.7e-06 53.9 86 46.5
Sed0007169 Sechium edule HOM05D004051 ORTHO05D004480 6.7e-06 53.9 82 43.9
Ciclev10006352m.g Citrus clementina HOM05D004051 ORTHO05D004480 8.7e-06 53.5 74 47.3
DCAR_010606 Daucus carota HOM05D004051 ORTHO05D004480 8.7e-06 53.5 77 50.6


User provided reference genes

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