Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc01g0010220 Simmondsia chinensis HOM05D007275 ORTHO05D009279 4.5e-46 187.6 96 100.0
AUR62010827 Chenopodium quinoa HOM05D007275 ORTHO05D009279 2.0e-38 162.2 96 85.4
EL10Ac5g12903 Beta vulgaris HOM05D007275 ORTHO05D009279 1.9e-36 155.6 96 81.2
Actinidia22145 Actinidia chinensis HOM05D007275 ORTHO05D009279 7.3e-36 153.7 96 81.2
Nn1g01839 Nelumbo nucifera HOM05D007275 ORTHO05D009279 2.1e-35 152.1 96 79.2
GSVIVG01019513001 Vitis vinifera HOM05D007275 ORTHO05D009279 2.8e-35 151.8 96 80.2
Dinv38844 Davidia involucrata HOM05D007275 ORTHO05D009279 6.1e-35 150.6 96 78.1
QL02p030913 Quercus lobata HOM05D007275 ORTHO05D009279 6.1e-35 150.6 95 76.8
Thecc.03G296000 Theobroma cacao HOM05D007275 ORTHO05D009279 6.1e-35 150.6 96 79.2
Ciclev10024283m.g Citrus clementina HOM05D007275 ORTHO05D009279 8.0e-35 150.2 94 79.8
TAR375G1117 Trochodendron aralioides HOM05D007275 ORTHO05D009279 8.0e-35 150.2 96 80.2
Nn3g19047 Nelumbo nucifera HOM05D007275 ORTHO05D009279 1.0e-34 149.8 96 78.1
Peaxi162Scf00117g01123 Petunia axillaris HOM05D007275 ORTHO05D009279 1.4e-34 149.4 96 78.1
Gohir.D12G236900 Gossypium hirsutum HOM05D007275 ORTHO05D009279 2.3e-34 148.7 96 77.1
Gorai.008G253500 Gossypium raimondii HOM05D007275 ORTHO05D009279 2.3e-34 148.7 96 77.1
Gohir.A12G235700 Gossypium hirsutum HOM05D007275 ORTHO05D009279 5.2e-34 147.5 96 76.0
Hma1.2p1_0359F.1_g135280 Hydrangea macrophylla HOM05D007275 ORTHO05D009279 5.2e-34 147.5 96 77.1
CSS0010422 Camellia sinensis var. sinensis HOM05D007275 ORTHO05D009279 6.8e-34 147.1 94 77.7
Manes.02G011100 Manihot esculenta HOM05D007275 ORTHO05D009279 8.9e-34 146.7 95 77.9
CAN.G532.107 Capsicum annuum HOM05D007275 ORTHO05D009279 1.2e-33 146.4 96 77.1
Potri.001G092700 Populus trichocarpa HOM05D007275 ORTHO05D009279 1.5e-33 146.0 94 78.7
Cfa012796 Carpinus fangiana HOM05D007275 ORTHO05D009279 2.6e-33 145.2 95 77.9
COL.COLO4_10681 Corchorus olitorius HOM05D007275 ORTHO05D009279 2.6e-33 145.2 96 75.0
Phvul.002G297500 Phaseolus vulgaris HOM05D007275 ORTHO05D009279 2.6e-33 145.2 96 76.0
Cc08_g15930 Coffea canephora HOM05D007275 ORTHO05D009279 3.4e-33 144.8 96 76.0
Eucgr.D01727 Eucalyptus grandis HOM05D007275 ORTHO05D009279 3.4e-33 144.8 96 75.0
Prupe.5G117300 Prunus persica HOM05D007275 ORTHO05D009279 3.4e-33 144.8 90 82.2
Sabra01G0069000 Salix brachista HOM05D007275 ORTHO05D009279 4.4e-33 144.4 94 77.7
Gohir.D11G024100 Gossypium hirsutum HOM05D007275 ORTHO05D009279 5.8e-33 144.1 94 74.5
Gorai.007G025800 Gossypium raimondii HOM05D007275 ORTHO05D009279 5.8e-33 144.1 94 74.5
Nitab4.5_0010144g0020 Nicotiana tabacum HOM05D007275 ORTHO05D009279 5.8e-33 144.1 96 76.0
Potri.003G138800 Populus trichocarpa HOM05D007275 ORTHO05D009279 5.8e-33 144.1 93 76.3
Peaxi162Scf00074g01033 Petunia axillaris HOM05D007275 ORTHO05D009279 7.5e-33 143.7 90 78.9
Haze_08628 Corylus avellana HOM05D007275 ORTHO05D009279 9.8e-33 143.3 90 80.0
Gohir.A11G024400 Gossypium hirsutum HOM05D007275 ORTHO05D009279 9.8e-33 143.3 94 74.5
Nitab4.5_0000726g0090 Nicotiana tabacum HOM05D007275 ORTHO05D009279 9.8e-33 143.3 91 78.0
Solyc08g082160.3 Solanum lycopersicum HOM05D007275 ORTHO05D009279 9.8e-33 143.3 96 76.0
Sopen08g030440 Solanum pennellii HOM05D007275 ORTHO05D009279 9.8e-33 143.3 96 76.0
MBI06_g46619_MAGBIO Magnolia biondii HOM05D007275 ORTHO05D009279 1.3e-32 142.9 94 76.6
MBI06_g46730_MAGBIO Magnolia biondii HOM05D007275 ORTHO05D000022 1.3e-32 142.9 94 76.6
Nitab4.5_0000223g0330 Nicotiana tabacum HOM05D007275 ORTHO05D009279 1.3e-32 142.9 96 75.0
Sabra03G0100000 Salix brachista HOM05D007275 ORTHO05D009279 1.7e-32 142.5 93 76.3
Atru.chr9.2015 Acer truncatum HOM05D007275 ORTHO05D009279 2.2e-32 142.1 90 78.9
PGR031G2423 Punica granatum HOM05D007275 ORTHO05D009279 2.2e-32 142.1 96 72.9
TAR629G0721 Trochodendron aralioides HOM05D007275 ORTHO05D010861 2.2e-32 142.1 97 75.3
arahy.Tifrunner.gnm1.ann1.IALD8X Arachis hypogaea HOM05D007275 ORTHO05D009279 3.7e-32 141.4 94 72.3
Oeu038573.1 Olea europaea HOM05D007275 ORTHO05D009279 3.7e-32 141.4 96 75.0
PGSC0003DMG400012158 Solanum tuberosum HOM05D007275 ORTHO05D009279 3.7e-32 141.4 96 74.0
CiPaw.12G084200 Carya illinoinensis HOM05D007275 ORTHO05D009279 6.4e-32 140.6 96 76.0
MD14G1123400 Malus domestica HOM05D007275 ORTHO05D009279 6.4e-32 140.6 96 75.0
Hma1.2p1_0229F.1_g097175 Hydrangea macrophylla HOM05D007275 ORTHO05D009279 1.1e-31 139.8 93 74.2
Hma1.2p1_0229F.1_g097200 Hydrangea macrophylla HOM05D007275 ORTHO05D009279 1.1e-31 139.8 93 74.2
arahy.Tifrunner.gnm1.ann1.GQP3LI Arachis hypogaea HOM05D007275 ORTHO05D009279 1.4e-31 139.4 94 71.3
CSS0024458 Camellia sinensis var. sinensis HOM05D007275 ORTHO05D009279 1.4e-31 139.4 96 74.0
MD06G1104700 Malus domestica HOM05D007275 ORTHO05D009279 3.2e-31 138.3 96 72.9
SalBow1G5261 Salvia bowleyana HOM05D007275 ORTHO05D009279 1.2e-30 136.3 96 71.9
Dinv37542 Davidia involucrata HOM05D007275 ORTHO05D009279 2.7e-30 135.2 84 82.1
Migut.A00668 Erythranthe guttata HOM05D007275 ORTHO05D009279 2.7e-30 135.2 93 72.0
TPR.G3422 Trifolium pratense HOM05D007275 ORTHO05D009279 2.7e-30 135.2 96 68.8
SalBow1G0766 Salvia bowleyana HOM05D007275 ORTHO05D009279 3.5e-30 134.8 96 70.8
DCAR_005035 Daucus carota HOM05D007275 ORTHO05D009279 4.6e-30 134.4 95 70.5
ECA246G4125 Erigeron canadensis HOM05D007275 ORTHO05D009279 7.8e-30 133.7 91 71.4
HanXRQChr06g0166541 Helianthus annuus HOM05D007275 ORTHO05D009279 1.3e-29 132.9 91 71.4
Lsat_1_v5_gn_3_10301 Lactuca sativa HOM05D007275 ORTHO05D009279 1.3e-29 132.9 94 70.2
Glyma.05G216300 Glycine max HOM05D007275 ORTHO05D009279 1.7e-29 132.5 92 71.7
Glyma.08G022200 Glycine max HOM05D007275 ORTHO05D009279 2.3e-29 132.1 92 70.7
RcHm_v2.0_Chr7g0195121 Rosa chinensis HOM05D007275 ORTHO05D009279 2.3e-29 132.1 96 69.8
FvH4_5g04420 Fragaria vesca HOM05D007275 ORTHO05D009279 5.0e-29 131.0 97 69.1
FAN18G1142 Fragaria x ananassa HOM05D007275 ORTHO05D009279 5.0e-29 131.0 97 69.1
FAN18G2266 Fragaria x ananassa HOM05D007275 ORTHO05D009279 5.0e-29 131.0 97 69.1
Ah.12g052450 Amaranthus hybridus HOM05D006525 ORTHO05D007845 6.6e-29 130.6 75 85.3
FAN08G0060 Fragaria x ananassa HOM05D007275 ORTHO05D009279 6.6e-29 130.6 96 68.8
TWI60G1254 Tripterygium wilfordii HOM05D007275 ORTHO05D009279 1.1e-28 129.8 92 70.7
AUR62019826 Chenopodium quinoa HOM05D007275 ORTHO05D009279 1.5e-28 129.4 75 84.0
Lalb_Chr16g0390621 Lupinus albus HOM05D007275 ORTHO05D009279 1.5e-28 129.4 93 67.7
HanXRQChr17g0535191 Helianthus annuus HOM05D007275 ORTHO05D009279 2.5e-28 128.6 96 64.6
FvH4_3g01740 Fragaria vesca HOM05D007275 ORTHO05D009279 3.3e-28 128.3 97 69.1
Lj4g0015273 Lotus japonicus HOM05D007275 ORTHO05D009279 3.3e-28 128.3 92 69.6
Aqoxy7G00131 Aquilegia oxysepala HOM05D007275 ORTHO05D009279 9.5e-28 126.7 96 66.7
CANSAT21G2355 Cannabis sativa HOM05D007275 ORTHO05D009279 2.1e-27 125.6 89 73.0
Zm00001eb338790 Zea mays HOM05D007275 ORTHO05D009279 3.1e-26 121.7 97 68.0
ClCG07G014960 Citrullus lanatus HOM05D007275 ORTHO05D009279 4.0e-26 121.3 87 67.8
Medtr8g099385 Medicago truncatula HOM05D007275 ORTHO05D009279 6.8e-26 120.6 93 64.5
FAN13G1788 Fragaria x ananassa HOM05D007275 ORTHO05D009279 7.5e-25 117.1 125 53.6
unitig_748.g8124 Utricularia gibba HOM05D007275 ORTHO05D009279 1.3e-24 116.3 90 68.9
MELO3C032816.2 Cucumis melo HOM05D007275 ORTHO05D009279 1.7e-24 115.9 87 69.0
CsaV3_4G006490 Cucumis sativus L. HOM05D007275 ORTHO05D009279 2.2e-24 115.5 87 69.0
BcaNung01088 Brassica carinata HOM05D007275 ORTHO05D009279 2.9e-24 115.2 94 59.6
BcaNung01089 Brassica carinata HOM05D007275 ORTHO05D009279 6.4e-24 114.0 94 58.5
Nitab4.5_0007661g0010 Nicotiana tabacum HOM05D007275 ORTHO05D009279 8.3e-24 113.6 70 74.3
BcaC09g50944 Brassica carinata HOM05D007275 ORTHO05D009279 1.1e-23 113.2 94 58.5
A01p15130 Brassica napus HOM05D007275 ORTHO05D009279 1.1e-23 113.2 94 58.5
Hma1.2p1_2596F.1_g325120 Hydrangea macrophylla HOM05D007275 ORTHO05D009279 1.9e-23 112.5 69 82.6
C01p19030 Brassica napus HOM05D007275 ORTHO05D009279 2.4e-23 112.1 94 57.4
BolC1t01829H Brassica oleracea HOM05D007275 ORTHO05D009279 2.4e-23 112.1 94 57.4
ATR0320G041 Amborella trichopoda HOM05D007275 ORTHO05D009279 3.2e-23 111.7 90 63.3
Oeu063532.1 Olea europaea HOM05D007275 ORTHO05D009279 3.2e-23 111.7 80 71.2
CDE10G0124 Ceratophyllum demersum HOM05D007275 ORTHO05D009279 4.1e-23 111.3 82 67.1
Duzib068G1121 Durio zibethinus HOM05D007275 ORTHO05D009279 4.1e-23 111.3 72 80.6
CSS0026606 Camellia sinensis var. sinensis HOM05D007275 ORTHO05D009279 7.1e-23 110.5 68 75.0
Sed0004885 Sechium edule HOM05D007275 ORTHO05D009279 4.6e-22 107.8 88 62.5
Psat7g026480 Pisum sativum HOM05D007275 ORTHO05D009279 1.0e-21 106.7 87 64.4
CDE10G0242 Ceratophyllum demersum HOM05D000974 ORTHO05D002201 1.1e-20 103.2 83 63.9
Rhsim02G0242000 Rhododendron simsii HOM05D007275 ORTHO05D009279 6.2e-19 97.4 67 76.1
SEGI_25349 Sequoiadendron giganteum HOM05D007275 ORTHO05D009279 6.2e-19 97.4 94 52.1
FAN04G0348 Fragaria x ananassa HOM05D007275 ORTHO05D009279 2.0e-17 92.4 97 53.6
Thhalv10027148m.g Eutrema salsugineum HOM05D007275 ORTHO05D009279 1.5e-12 76.3 67 58.2
Lalb_Chr16g0390631 Lupinus albus HOM05D007275 ORTHO05D009279 5.6e-12 74.3 50 72.0
Aqoxy2G01184 Aquilegia oxysepala HOM05D000015 ORTHO05D009146 1.3e-08 63.2 99 42.4
Aqoxy1G02962 Aquilegia oxysepala HOM05D000015 ORTHO05D009146 8.4e-08 60.5 99 40.4
Manes.17G027600 Manihot esculenta HOM05D000015 ORTHO05D009146 1.4e-07 59.7 96 40.6
Rhsim13G0150400 Rhododendron simsii HOM05D000015 ORTHO05D009146 1.9e-07 59.3 99 40.4
DCAR_028343 Daucus carota HOM05D000015 ORTHO05D009146 4.2e-07 58.2 91 36.3
MD10G1326200 Malus domestica HOM05D000015 ORTHO05D009146 1.6e-06 56.2 103 38.8
QL03p004924 Quercus lobata HOM05D000015 ORTHO05D009146 1.6e-06 56.2 101 38.6
QL05p071991 Quercus lobata HOM05D000015 ORTHO05D009146 1.6e-06 56.2 101 38.6
CANSAT56G2899 Cannabis sativa HOM05D000015 ORTHO05D009146 2.1e-06 55.8 98 39.8
Carub.0002s0264 Capsella rubella HOM05D000015 ORTHO05D009146 2.1e-06 55.8 87 39.1
ECA236G1637 Erigeron canadensis HOM05D000015 ORTHO05D009146 2.1e-06 55.8 94 38.3
A03p67860 Brassica napus HOM05D000015 ORTHO05D009146 2.7e-06 55.5 87 39.1
BraA01t02683Z Brassica rapa HOM05D000015 ORTHO05D009146 2.7e-06 55.5 87 39.1
Dinv13936 Davidia involucrata HOM05D000015 ORTHO05D009146 2.7e-06 55.5 99 38.4
Actinidia26881 Actinidia chinensis HOM05D000015 ORTHO05D009146 3.5e-06 55.1 100 36.0
Gohir.D06G157000 Gossypium hirsutum HOM05D000015 ORTHO05D009146 3.5e-06 55.1 99 36.4
Gorai.010G183500 Gossypium raimondii HOM05D000015 ORTHO05D009146 3.5e-06 55.1 99 36.4
Haze_06854 Corylus avellana HOM05D000015 ORTHO05D009146 4.6e-06 54.7 99 37.4
Thhalv10023274m.g Eutrema salsugineum HOM05D000015 ORTHO05D009146 4.6e-06 54.7 86 38.4
CiPaw.10G074200 Carya illinoinensis HOM05D000015 ORTHO05D009146 6.0e-06 54.3 102 35.3
Lj1A1236G69 Lonicera japonica HOM05D000015 ORTHO05D009146 6.0e-06 54.3 103 35.0
C04p28400 Brassica napus HOM05D000015 ORTHO05D009146 7.8e-06 53.9 87 39.1
BolC4t24386H Brassica oleracea HOM05D000015 ORTHO05D009146 7.8e-06 53.9 87 39.1
GSVIVG01004808001 Vitis vinifera HOM05D000015 ORTHO05D009146 7.8e-06 53.9 101 37.6


User provided reference genes

Program Settings