Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc01g0010190 Simmondsia chinensis HOM05D006501 ORTHO05D008241 3.6e-103 378.3 193 100.0
Hund11400 Selenicereus undatus HOM05D006501 ORTHO05D008241 2.6e-56 222.6 176 69.9
Thecc.03G294700 Theobroma cacao HOM05D006501 ORTHO05D008241 1.3e-52 210.3 183 65.0
GSVIVG01019510001 Vitis vinifera HOM05D006501 ORTHO05D003403 2.2e-52 209.5 194 62.9
Nitab4.5_0006656g0030 Nicotiana tabacum HOM05D006501 ORTHO05D008241 1.9e-51 206.5 171 64.3
Atru.chr4.2141 Acer truncatum HOM05D006501 ORTHO05D008241 3.2e-51 205.7 174 65.5
Dinv37544 Davidia involucrata HOM05D006501 ORTHO05D008241 3.2e-51 205.7 173 64.7
DCAR_005033 Daucus carota HOM05D006501 ORTHO05D008241 4.2e-51 205.3 163 68.7
MD14G1122900 Malus domestica HOM05D006501 ORTHO05D008241 7.2e-51 204.5 193 62.2
Rhsim07G0083200 Rhododendron simsii HOM05D006501 ORTHO05D008241 7.2e-51 204.5 167 64.7
Nn3g19061 Nelumbo nucifera HOM05D006501 ORTHO05D008241 1.6e-50 203.4 156 69.2
Oeu009949.1 Olea europaea HOM05D006501 ORTHO05D008241 3.6e-50 202.2 140 74.3
Prupe.5G116900 Prunus persica HOM05D006501 ORTHO05D008241 3.6e-50 202.2 190 61.1
Actinidia27329 Actinidia chinensis HOM05D006501 ORTHO05D008241 6.1e-50 201.4 178 61.2
RcHm_v2.0_Chr7g0195201 Rosa chinensis HOM05D006501 ORTHO05D008241 6.1e-50 201.4 190 62.1
CANSAT21G0520 Cannabis sativa HOM05D006501 ORTHO05D008241 8.0e-50 201.1 191 59.2
CSS0007891 Camellia sinensis var. sinensis HOM05D006501 ORTHO05D008241 1.4e-49 200.3 169 63.9
CAN.G792.46 Capsicum annuum HOM05D006501 ORTHO05D008241 1.4e-49 200.3 172 65.1
Solyc08g008270.4 Solanum lycopersicum HOM05D006501 ORTHO05D008241 1.4e-49 200.3 169 64.5
Aqoxy7G00141 Aquilegia oxysepala HOM05D006501 ORTHO05D008241 2.3e-49 199.5 185 62.2
Sopen08g004120 Solanum pennellii HOM05D006501 ORTHO05D008241 2.3e-49 199.5 169 63.9
COL.COLO4_10671 Corchorus olitorius HOM05D006501 ORTHO05D008241 3.0e-49 199.1 193 62.7
Gohir.A08G100000 Gossypium hirsutum HOM05D006501 ORTHO05D008241 3.0e-49 199.1 183 62.8
Cc08_g15900 Coffea canephora HOM05D006501 ORTHO05D008241 4.0e-49 198.7 195 59.0
TWI60G0228 Tripterygium wilfordii HOM05D006501 ORTHO05D008241 5.2e-49 198.4 188 62.2
Gorai.004G134700 Gossypium raimondii HOM05D006501 ORTHO05D008241 6.8e-49 198.0 183 62.8
PGSC0003DMG400005788 Solanum tuberosum HOM05D006501 ORTHO05D008241 6.8e-49 198.0 169 63.3
MD06G1104000 Malus domestica HOM05D006501 ORTHO05D008241 8.8e-49 197.6 191 59.7
ClCG01G001980 Citrullus lanatus HOM05D006501 ORTHO05D008241 1.5e-48 196.8 172 62.8
Sed0001613 Sechium edule HOM05D006501 ORTHO05D008241 1.5e-48 196.8 173 64.7
Manes.02G011600 Manihot esculenta HOM05D006501 ORTHO05D008241 3.4e-48 195.7 197 59.4
Sabra03G0099700 Salix brachista HOM05D006501 ORTHO05D003403 3.4e-48 195.7 148 68.9
vmacro13905 Vaccinium macrocarpon HOM05D006501 ORTHO05D008241 3.4e-48 195.7 165 64.2
Gohir.D08G131800 Gossypium hirsutum HOM05D006501 ORTHO05D008241 9.7e-48 194.1 183 61.7
Peaxi162Scf00102g01748 Petunia axillaris HOM05D006501 ORTHO05D008241 9.7e-48 194.1 174 60.9
Hma1.2p1_0952F.1_g241030 Hydrangea macrophylla HOM05D006501 ORTHO05D008241 1.3e-47 193.7 155 67.1
Actinidia22724 Actinidia chinensis HOM05D006501 ORTHO05D008241 1.7e-47 193.4 148 67.6
Lalb_Chr05g0224191 Lupinus albus HOM05D006501 ORTHO05D008241 2.2e-47 193.0 133 73.7
MELO3C005743.2 Cucumis melo HOM05D006501 ORTHO05D008241 2.8e-47 192.6 130 74.6
Ca_17489_v3 Cicer arietinum L. HOM05D006501 ORTHO05D008241 3.7e-47 192.2 140 71.4
Potri.003G138500 Populus trichocarpa HOM05D006501 ORTHO05D008241 3.7e-47 192.2 175 62.3
PGR042G3674 Punica granatum HOM05D006501 ORTHO05D008241 3.7e-47 192.2 115 82.6
AT1G64355 Arabidopsis thaliana HOM05D006501 ORTHO05D008241 4.8e-47 191.8 114 81.6
BraA09t37076Z Brassica rapa HOM05D006501 ORTHO05D008241 4.8e-47 191.8 173 63.0
HanXRQChr09g0256331 Helianthus annuus HOM05D006501 ORTHO05D008241 4.8e-47 191.8 164 63.4
Cfa022928 Carpinus fangiana HOM05D006501 ORTHO05D008241 6.3e-47 191.4 117 80.3
CsaV3_5G002110 Cucumis sativus L. HOM05D006501 ORTHO05D008241 6.3e-47 191.4 176 60.8
Sp2g00400 Schrenkiella parvula HOM05D006501 ORTHO05D008241 1.1e-46 190.7 171 62.0
COL.COLO4_10669 Corchorus olitorius HOM05D006501 ORTHO05D008241 1.8e-46 189.9 197 57.4
HPP92_004586 Vanilla planifolia HOM05D006501 ORTHO05D000003 1.8e-46 189.9 161 60.2
BolC9t54619H Brassica oleracea HOM05D006501 ORTHO05D008241 2.4e-46 189.5 168 64.3
Glyma.05G215800 Glycine max HOM05D006501 ORTHO05D008241 2.4e-46 189.5 166 64.5
VMungo0251G3563 Vigna mungo HOM05D006501 ORTHO05D008241 2.4e-46 189.5 177 63.3
Medtr8g099345 Medicago truncatula HOM05D006501 ORTHO05D008241 4.1e-46 188.7 139 71.9
Phvul.002G297000 Phaseolus vulgaris HOM05D006501 ORTHO05D008241 4.1e-46 188.7 177 62.7
THA.LOC104809338 Tarenaya hassleriana HOM05D006501 ORTHO05D008241 4.1e-46 188.7 109 85.3
AL2G10510 Arabidopsis lyrata HOM05D006501 ORTHO05D008241 5.3e-46 188.3 109 84.4
Duzib068G1433 Durio zibethinus HOM05D006501 ORTHO05D008241 5.3e-46 188.3 209 54.1
Eucgr.E00849 Eucalyptus grandis HOM05D006501 ORTHO05D008241 5.3e-46 188.3 128 75.8
unitig_46.g18618 Utricularia gibba HOM05D006501 ORTHO05D008241 7.0e-46 188.0 114 80.7
MSTRG.25662 Avicennia marina HOM05D006501 ORTHO05D008241 1.6e-45 186.8 127 74.8
Ciclev10022489m.g Citrus clementina HOM05D006501 ORTHO05D008241 2.7e-45 186.0 111 83.8
CDE10G1320 Ceratophyllum demersum HOM05D000199 ORTHO05D001448 5.9e-45 184.9 123 74.8
Duzib205G0456 Durio zibethinus HOM05D006501 ORTHO05D008241 5.9e-45 184.9 190 58.4
Migut.A00672 Erythranthe guttata HOM05D006501 ORTHO05D008241 5.9e-45 184.9 136 69.1
PSO384G3305 Papaver somniferum HOM05D006501 ORTHO05D008241 1.0e-44 184.1 143 68.5
Nitab4.5_0002944g0130 Nicotiana tabacum HOM05D006501 ORTHO05D008241 2.9e-44 182.6 171 59.6
PSO135G1023 Papaver somniferum HOM05D006501 ORTHO05D008241 2.9e-44 182.6 166 60.8
SEGI_07201 Sequoiadendron giganteum HOM05D006501 ORTHO05D008241 2.9e-44 182.6 107 82.2
Cpa.g.sc79.61 Carica papaya HOM05D006501 ORTHO05D008241 3.8e-44 182.2 132 72.7
Psat7g027120 Pisum sativum HOM05D006501 ORTHO05D008241 5.0e-44 181.8 132 68.9
TAR374G0759 Trochodendron aralioides HOM05D006501 ORTHO05D008241 6.5e-44 181.4 126 73.8
AagrBONN_evm.TU.Sc2ySwM_362.747 Anthoceros agrestis HOM05D006501 ORTHO05D008241 1.1e-43 180.6 194 54.6
TPR.G3451 Trifolium pratense HOM05D006501 ORTHO05D008241 1.1e-43 180.6 109 79.8
CiPaw.11G123100 Carya illinoinensis HOM05D006501 ORTHO05D008241 1.9e-43 179.9 157 63.7
Lj4g0012209 Lotus japonicus HOM05D006501 ORTHO05D008241 1.9e-43 179.9 178 57.3
TAR374G1465 Trochodendron aralioides HOM05D006501 ORTHO05D008241 1.9e-43 179.9 126 73.0
Pp3c8_24130 Physcomitrium patens HOM05D006501 ORTHO05D008241 2.5e-43 179.5 169 62.1
FAN18G4356 Fragaria x ananassa HOM05D006501 ORTHO05D008241 4.2e-43 178.7 194 57.2
FAN08G0187 Fragaria x ananassa HOM05D006501 ORTHO05D008241 5.5e-43 178.3 189 57.1
MBI07_g24349_MAGBIO Magnolia biondii HOM05D006501 ORTHO05D008241 5.5e-43 178.3 144 67.4
SGA_v2.0_scaffold305G47943 Striga asiatica HOM05D006501 ORTHO05D008241 7.2e-43 177.9 142 66.2
FAN13G2672 Fragaria x ananassa HOM05D006501 ORTHO05D008241 9.4e-43 177.6 189 56.6
BcaB07g31511 Brassica carinata HOM05D006501 ORTHO05D008241 1.2e-42 177.2 169 59.8
FAN04G2094 Fragaria x ananassa HOM05D006501 ORTHO05D008241 1.2e-42 177.2 189 56.6
FAN18G2585 Fragaria x ananassa HOM05D006501 ORTHO05D008241 2.1e-42 176.4 194 56.7
BcaB07g31509 Brassica carinata HOM05D006501 ORTHO05D008241 3.6e-42 175.6 155 63.2
SalBow1G7260 Salvia bowleyana HOM05D006501 ORTHO05D008241 3.6e-42 175.6 142 64.8
SalBow1G8172 Salvia bowleyana HOM05D006501 ORTHO05D008241 3.6e-42 175.6 142 64.8
Zm00001eb296420 Zea mays HOM05D006501 ORTHO05D008241 3.6e-42 175.6 142 64.8
Haze_08636 Corylus avellana HOM05D006501 ORTHO05D008241 2.0e-40 169.9 149 63.8
A09p14290 Brassica napus HOM05D006501 ORTHO05D008241 2.6e-40 169.5 161 60.2
arahy.Tifrunner.gnm1.ann1.68SH35 Arachis hypogaea HOM05D006501 ORTHO05D008241 3.4e-40 169.1 193 54.4
C09p17200 Brassica napus HOM05D006501 ORTHO05D008241 3.4e-40 169.1 168 60.1
arahy.Tifrunner.gnm1.ann1.MC0I99 Arachis hypogaea HOM05D006501 ORTHO05D008241 7.5e-40 167.9 195 53.3
BcaC04g22628 Brassica carinata HOM05D006501 ORTHO05D008241 7.5e-40 167.9 111 75.7
Mapoly0049s0020 Marchantia polymorpha HOM05D006501 ORTHO05D008241 9.8e-40 167.5 110 77.3
Sed0024637 Sechium edule HOM05D006501 ORTHO05D008241 1.3e-39 167.2 127 66.9
Aa31LG2G1320 Aethionema arabicum HOM05D005266 ORTHO05D006416 2.2e-39 166.4 136 66.2
Migut.E01245 Erythranthe guttata HOM05D006501 ORTHO05D008241 3.5e-37 159.1 117 68.4
Lsat_1_v5_gn_6_12120 Lactuca sativa HOM05D006501 ORTHO05D008241 1.3e-36 157.1 168 57.1
Cre08.g376450 Chlamydomonas reinhardtii HOM05D006501 ORTHO05D008241 1.7e-36 156.8 99 75.8
Atru.chr9.2018 Acer truncatum HOM05D006501 ORTHO05D008241 1.8e-33 146.7 194 51.0
Hma1.2p1_0952F.1_g241020 Hydrangea macrophylla HOM05D006501 ORTHO05D008241 1.8e-33 146.7 194 50.0
Zm00001eb150250 Zea mays HOM05D006501 ORTHO05D008241 2.0e-32 143.3 107 70.1
SalBow8G4809 Salvia bowleyana HOM05D006501 ORTHO05D008241 1.7e-31 140.2 135 60.0
BcaC04g22630 Brassica carinata HOM05D006501 ORTHO05D008241 9.2e-30 134.4 88 79.5
Potri.001G093001 Populus trichocarpa HOM05D006501 ORTHO05D008241 1.8e-25 120.2 80 77.5
Carub.0002s0043 Capsella rubella HOM05D006501 ORTHO05D008241 5.2e-25 118.6 66 86.4
Thhalv10023703m.g Eutrema salsugineum HOM05D006501 ORTHO05D008241 5.2e-25 118.6 66 86.4
AUR62019819 Chenopodium quinoa HOM05D006501 ORTHO05D008241 6.8e-25 118.2 126 57.9
EL10Ac5g12897 Beta vulgaris HOM05D006501 ORTHO05D008241 8.9e-25 117.9 125 57.6
CARHR046590 Cardamine hirsuta HOM05D006501 ORTHO05D008241 1.2e-24 117.5 66 84.8
QL02p031049 Quercus lobata HOM05D006501 ORTHO05D008241 1.5e-24 117.1 122 56.6
Ah.12g052370 Amaranthus hybridus HOM05D006501 ORTHO05D008241 3.4e-24 115.9 111 62.2
AUR62010820 Chenopodium quinoa HOM05D006501 ORTHO05D008241 9.8e-24 114.4 129 58.9
SEGI_03665 Sequoiadendron giganteum HOM05D006501 ORTHO05D008241 1.3e-23 114.0 64 84.4
FvH4_5g04360 Fragaria vesca HOM05D006501 ORTHO05D008241 1.1e-22 110.9 130 56.2
SGA_v2.0_scaffold144G35857 Striga asiatica HOM05D006501 ORTHO05D008241 1.9e-22 110.2 131 52.7
CBR_g30621 Chara braunii HOM05D006501 ORTHO05D008241 3.0e-20 102.8 62 80.6
Ah.12g052380 Amaranthus hybridus HOM05D006501 ORTHO05D008241 8.6e-20 101.3 75 68.0
MCO03G553 Micromonas commoda HOM05D005851 ORTHO05D007137 1.1e-19 100.9 99 53.5
PRCOL_00005435 Prasinoderma coloniale HOM05D005851 ORTHO05D007137 1.8e-17 93.6 108 48.1
PRCOL_00002729 Prasinoderma coloniale HOM05D005851 ORTHO05D007137 4.0e-17 92.4 118 49.2
ECA233G1307 Erigeron canadensis HOM05D006501 ORTHO05D008241 1.3e-15 87.4 65 66.2
MCO14G091 Micromonas commoda HOM05D005851 ORTHO05D007137 2.2e-15 86.7 93 50.5
Lj2C170T10 Lonicera japonica HOM05D006501 ORTHO05D008241 2.9e-15 86.3 58 72.4
Atru.chr9.2021 Acer truncatum HOM05D006501 ORTHO05D008241 4.6e-13 79.0 123 49.6
RcHm_v2.0_Chr6g0301591 Rosa chinensis HOM05D001075 ORTHO05D008241 1.2e-08 64.3 80 46.2
PRCOL_00002728 Prasinoderma coloniale HOM05D005851 ORTHO05D049091 2.6e-08 63.2 89 42.7
MCO14G438 Micromonas commoda HOM05D006501 ORTHO05D008241 1.7e-07 60.5 85 44.7


User provided reference genes

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