Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc01g0010170 Simmondsia chinensis HOM05D005006 ORTHO05D005903 1.2e-71 273.1 144 100.0
Sc22g0005120 Simmondsia chinensis HOM05D005006 ORTHO05D005903 2.0e-21 106.3 152 46.1
CiPaw.11G123200 Carya illinoinensis HOM05D005006 ORTHO05D005903 7.1e-19 97.8 165 44.8
Solyc08g082090.1 Solanum lycopersicum HOM05D005006 ORTHO05D005903 1.7e-17 93.2 144 45.8
Sopen08g030380 Solanum pennellii HOM05D005006 ORTHO05D005903 1.7e-17 93.2 144 45.8
MELO3C005742.2 Cucumis melo HOM05D005006 ORTHO05D005903 2.3e-17 92.8 145 45.5
PGSC0003DMG400012296 Solanum tuberosum HOM05D005006 ORTHO05D005903 2.3e-17 92.8 144 45.1
FvH4_5g04150 Fragaria vesca HOM05D005006 ORTHO05D005903 6.6e-17 91.3 146 45.2
FAN13G1208 Fragaria x ananassa HOM05D005006 ORTHO05D005903 6.6e-17 91.3 146 44.5
FAN18G0263 Fragaria x ananassa HOM05D005006 ORTHO05D005903 6.6e-17 91.3 146 44.5
Glyma.01G224600 Glycine max HOM05D005006 ORTHO05D005903 6.6e-17 91.3 158 41.8
TAR629G3139 Trochodendron aralioides HOM05D005006 ORTHO05D005903 8.7e-17 90.9 163 42.9
CsaV3_5G002120 Cucumis sativus L. HOM05D005006 ORTHO05D005903 1.1e-16 90.5 147 43.5
FAN18G2980 Fragaria x ananassa HOM05D005006 ORTHO05D005903 1.1e-16 90.5 146 44.5
Gohir.D08G132000 Gossypium hirsutum HOM05D005006 ORTHO05D005903 1.1e-16 90.5 159 40.9
Gorai.004G134900 Gossypium raimondii HOM05D005006 ORTHO05D005903 1.1e-16 90.5 159 40.9
Haze_08652 Corylus avellana HOM05D005006 ORTHO05D005903 1.5e-16 90.1 155 41.9
Glyma.11G018400 Glycine max HOM05D005006 ORTHO05D005903 1.5e-16 90.1 159 40.9
Potri.001G093500 Populus trichocarpa HOM05D005006 ORTHO05D005903 1.5e-16 90.1 145 44.1
Cfa012825 Carpinus fangiana HOM05D005006 ORTHO05D005903 2.5e-16 89.4 154 45.5
ClCG01G001990 Citrullus lanatus HOM05D005006 ORTHO05D005903 3.3e-16 89.0 142 43.7
Haze_08651 Corylus avellana HOM05D005006 ORTHO05D005903 3.3e-16 89.0 155 41.3
QL02p031286 Quercus lobata HOM05D005006 ORTHO05D005903 3.3e-16 89.0 162 42.0
Actinidia01391 Actinidia chinensis HOM05D005006 ORTHO05D005903 4.3e-16 88.6 162 39.5
Gohir.A08G085100 Gossypium hirsutum HOM05D005006 ORTHO05D005903 4.3e-16 88.6 159 40.3
Dinv37546 Davidia involucrata HOM05D005006 ORTHO05D005903 1.3e-15 87.0 166 42.2
Sp7g00270 Schrenkiella parvula HOM05D005006 ORTHO05D005903 1.6e-15 86.7 181 35.9
TWI81G0332 Tripterygium wilfordii HOM05D005006 ORTHO05D005903 1.6e-15 86.7 162 40.1
MSTRG.13880 Avicennia marina HOM05D005006 ORTHO05D005903 2.1e-15 86.3 163 38.0
Sed0013874 Sechium edule HOM05D005006 ORTHO05D005903 2.1e-15 86.3 120 44.2
RcHm_v2.0_Chr7g0195351 Rosa chinensis HOM05D005006 ORTHO05D005903 4.8e-15 85.1 167 41.9
CANSAT21G0143 Cannabis sativa HOM05D005006 ORTHO05D005903 6.2e-15 84.7 162 38.3
Manes.02G011900 Manihot esculenta HOM05D005006 ORTHO05D005903 6.2e-15 84.7 159 40.3
Cpa.g.sc775.1 Carica papaya HOM05D005006 ORTHO05D005903 8.1e-15 84.3 153 43.8
ClCG07G014930 Citrullus lanatus HOM05D005006 ORTHO05D005903 8.1e-15 84.3 167 37.1
MELO3C016304.2 Cucumis melo HOM05D005006 ORTHO05D005903 8.1e-15 84.3 172 39.0
ClCG10G009270 Citrullus lanatus HOM05D005006 ORTHO05D005903 1.1e-14 84.0 167 37.1
PGR031G0908 Punica granatum HOM05D005006 ORTHO05D005903 1.1e-14 84.0 156 39.7
Eucgr.D01714 Eucalyptus grandis HOM05D005006 ORTHO05D005903 1.4e-14 83.6 175 40.0
COL.COLO4_21708 Corchorus olitorius HOM05D005006 ORTHO05D005903 1.8e-14 83.2 160 37.5
Nitab4.5_0007099g0020 Nicotiana tabacum HOM05D005006 ORTHO05D005903 1.8e-14 83.2 147 40.8
HanXRQChr03g0085171 Helianthus annuus HOM05D005006 ORTHO05D005903 2.4e-14 82.8 145 41.4
BraA07t29781Z Brassica rapa HOM05D005006 ORTHO05D005903 3.1e-14 82.4 173 36.4
THA.LOC104809339 Tarenaya hassleriana HOM05D005006 ORTHO05D005903 3.1e-14 82.4 189 36.0
Aqoxy5G04131 Aquilegia oxysepala HOM05D005006 ORTHO05D005903 4.0e-14 82.0 169 37.3
Duzib084G0720 Durio zibethinus HOM05D005006 ORTHO05D005903 4.0e-14 82.0 158 38.6
TWI15G0537 Tripterygium wilfordii HOM05D005006 ORTHO05D005903 4.0e-14 82.0 164 37.2
AUR62010816 Chenopodium quinoa HOM05D005006 ORTHO05D005903 5.3e-14 81.6 166 36.7
ECA240G3705 Erigeron canadensis HOM05D005006 ORTHO05D005903 6.9e-14 81.3 147 42.2
BcaC08g44558 Brassica carinata HOM05D005006 ORTHO05D005903 9.0e-14 80.9 172 36.6
A07p20950 Brassica napus HOM05D005006 ORTHO05D005903 9.0e-14 80.9 173 35.8
C06p20240 Brassica napus HOM05D005006 ORTHO05D005903 9.0e-14 80.9 172 36.6
BolC6t37205H Brassica oleracea HOM05D005006 ORTHO05D005903 9.0e-14 80.9 172 36.6
MD06G1103200 Malus domestica HOM05D005006 ORTHO05D005903 9.0e-14 80.9 160 40.6
Thecc.03G294000 Theobroma cacao HOM05D005006 ORTHO05D005903 1.2e-13 80.5 149 38.9
Duzib068G0822 Durio zibethinus HOM05D005006 ORTHO05D005903 1.5e-13 80.1 156 40.4
Psat0s4474g0040 Pisum sativum HOM05D005006 ORTHO05D005903 1.5e-13 80.1 173 35.3
Lj4g0012980 Lotus japonicus HOM05D005006 ORTHO05D005903 2.0e-13 79.7 176 35.8
MD14G1122100 Malus domestica HOM05D005006 ORTHO05D005903 2.0e-13 79.7 160 38.1
CARHR212760 Cardamine hirsuta HOM05D005006 ORTHO05D005903 3.4e-13 79.0 170 37.1
Oeu061095.1 Olea europaea HOM05D005006 ORTHO05D005903 5.8e-13 78.2 148 39.2
Prupe.5G116000 Prunus persica HOM05D005006 ORTHO05D005903 5.8e-13 78.2 189 37.0
BcaB02g07876 Brassica carinata HOM05D005006 ORTHO05D005903 7.6e-13 77.8 174 36.8
Ciclev10022492m.g Citrus clementina HOM05D005006 ORTHO05D005903 9.9e-13 77.4 186 39.2
Manes.01G045300 Manihot esculenta HOM05D005006 ORTHO05D005903 9.9e-13 77.4 173 38.7
Ca_17490_v3 Cicer arietinum L. HOM05D005006 ORTHO05D005903 1.3e-12 77.0 171 33.3
AL2G10550 Arabidopsis lyrata HOM05D005006 ORTHO05D005903 1.7e-12 76.6 146 36.3
Carub.0002s0046 Capsella rubella HOM05D005006 ORTHO05D005903 1.7e-12 76.6 147 38.8
Cc08_g15850 Coffea canephora HOM05D005006 ORTHO05D005903 1.7e-12 76.6 154 39.6
CsaV3_4G006460 Cucumis sativus L. HOM05D005006 ORTHO05D005903 1.7e-12 76.6 175 37.1
TPR.G6668 Trifolium pratense HOM05D005006 ORTHO05D005903 2.2e-12 76.3 176 35.8
AT5G41810 Arabidopsis thaliana HOM05D005006 ORTHO05D005903 2.9e-12 75.9 173 35.8
Glyma.05G215700 Glycine max HOM05D005006 ORTHO05D005903 4.9e-12 75.1 165 37.0
Sed0010968 Sechium edule HOM05D005006 ORTHO05D005903 4.9e-12 75.1 165 36.4
AL7G47430 Arabidopsis lyrata HOM05D005006 ORTHO05D005903 6.4e-12 74.7 188 34.0
HanXRQChr07g0191041 Helianthus annuus HOM05D005006 ORTHO05D005903 8.4e-12 74.3 159 35.8
Medtr8g099340 Medicago truncatula HOM05D005006 ORTHO05D005903 8.4e-12 74.3 167 33.5
Psat7g027080 Pisum sativum HOM05D005006 ORTHO05D005903 8.4e-12 74.3 165 32.7
SGA_v2.0_scaffold111G31421 Striga asiatica HOM05D005006 ORTHO05D005903 1.1e-11 73.9 156 35.3
Glyma.08G021800 Glycine max HOM05D005006 ORTHO05D005903 1.4e-11 73.6 166 35.5
Sed0017945 Sechium edule HOM05D005006 ORTHO05D005903 1.4e-11 73.6 145 38.6
A09p14260 Brassica napus HOM05D005006 ORTHO05D005903 1.9e-11 73.2 141 36.2
BraA09t37075Z Brassica rapa HOM05D005006 ORTHO05D005903 2.4e-11 72.8 141 35.5
CSS0014692 Camellia sinensis var. sinensis HOM05D005006 ORTHO05D005903 2.4e-11 72.8 163 36.2
Lsat_1_v5_gn_6_11781 Lactuca sativa HOM05D005006 ORTHO05D005903 2.4e-11 72.8 156 35.3
Sp2g00420 Schrenkiella parvula HOM05D005006 ORTHO05D005903 2.4e-11 72.8 151 35.1
Carub.0007s3356 Capsella rubella HOM05D005006 ORTHO05D005903 4.2e-11 72.0 174 34.5
DCAR_027715 Daucus carota HOM05D005006 ORTHO05D005903 4.2e-11 72.0 164 34.8
C09p17190 Brassica napus HOM05D005006 ORTHO05D005903 5.4e-11 71.6 151 35.1
BolC9t54617H Brassica oleracea HOM05D005006 ORTHO05D005903 5.4e-11 71.6 151 35.1
Thhalv10023644m.g Eutrema salsugineum HOM05D005006 ORTHO05D005903 5.4e-11 71.6 157 33.8
BcaC04g22629 Brassica carinata HOM05D005006 ORTHO05D005903 7.1e-11 71.2 151 34.4
Manes.02G012001 Manihot esculenta HOM05D005006 ORTHO05D005903 7.1e-11 71.2 138 40.6
Atru.chr2.764 Acer truncatum HOM05D005006 ORTHO05D005903 9.3e-11 70.9 144 40.3
Atru.chr9.2028 Acer truncatum HOM05D005006 ORTHO05D005903 9.3e-11 70.9 148 35.8
Atru.chr9.2036 Acer truncatum HOM05D005006 ORTHO05D005903 9.3e-11 70.9 148 35.8
AT1G64340 Arabidopsis thaliana HOM05D005006 ORTHO05D005903 9.3e-11 70.9 143 37.1
CSS0022093 Camellia sinensis var. sinensis HOM05D005006 ORTHO05D005903 9.3e-11 70.9 164 40.2
Phvul.002G296900 Phaseolus vulgaris HOM05D005006 ORTHO05D005903 1.6e-10 70.1 190 35.3
Peaxi162Scf00074g01119 Petunia axillaris HOM05D005006 ORTHO05D005903 2.1e-10 69.7 110 41.8
Sabra01G0069400 Salix brachista HOM05D000089 ORTHO05D003403 2.7e-10 69.3 152 38.2
Lsat_1_v5_gn_6_85661 Lactuca sativa HOM05D005006 ORTHO05D005903 3.5e-10 68.9 151 39.7
ECA233G6185 Erigeron canadensis HOM05D005006 ORTHO05D005903 4.6e-10 68.6 180 31.7
FAN04G1712 Fragaria x ananassa HOM05D005006 ORTHO05D005903 4.6e-10 68.6 132 39.4
FAN04G3134 Fragaria x ananassa HOM05D005006 ORTHO05D005903 4.6e-10 68.6 132 39.4
MBI07_g24340_MAGBIO Magnolia biondii HOM05D005006 ORTHO05D005903 6.0e-10 68.2 157 36.3
VMungo1215G3249 Vigna mungo HOM05D005266 ORTHO05D006416 1.0e-09 67.4 148 35.1
BcaB07g31512 Brassica carinata HOM05D005006 ORTHO05D005903 1.8e-09 66.6 158 31.6
Lalb_Chr05g0224201 Lupinus albus HOM05D005006 ORTHO05D005903 1.8e-09 66.6 169 33.7
Medtr5g009490 Medicago truncatula HOM05D005006 ORTHO05D005903 1.8e-09 66.6 168 31.0
VMungo0251G1458 Vigna mungo HOM05D005006 ORTHO05D005903 3.9e-09 65.5 196 33.7
Aa31LG9G320 Aethionema arabicum HOM05D005006 ORTHO05D005903 8.7e-09 64.3 156 35.3
Rhsim07G0083400 Rhododendron simsii HOM05D005006 ORTHO05D005903 8.7e-09 64.3 162 31.5
Gohir.A11G024100 Gossypium hirsutum HOM05D005006 ORTHO05D005903 5.6e-08 61.6 88 42.0
Hma1.2p1_0359F.1_g135340 Hydrangea macrophylla HOM05D005006 ORTHO05D005903 5.6e-08 61.6 134 35.1
PGR042G1559 Punica granatum HOM05D005006 ORTHO05D005903 5.6e-08 61.6 156 31.4
Phvul.002G163200 Phaseolus vulgaris HOM05D005006 ORTHO05D005903 9.6e-08 60.8 88 39.8
LjContig00312_ERROPOS870357g0014674 Lotus japonicus HOM05D005006 ORTHO05D005903 2.8e-07 59.3 166 34.9
Peaxi162Scf00117g00128 Petunia axillaris HOM05D005006 ORTHO05D005903 3.7e-07 58.9 133 35.3
Nn1g01823 Nelumbo nucifera HOM05D005006 ORTHO05D005903 6.2e-07 58.2 141 36.2
Rhsim02G0241500 Rhododendron simsii HOM05D005006 ORTHO05D005903 6.2e-07 58.2 164 35.4
PSO729G0067 Papaver somniferum HOM05D005006 ORTHO05D005903 6.9e-06 54.7 86 38.4
Dinv38852 Davidia involucrata HOM05D005006 ORTHO05D005903 9.0e-06 54.3 138 33.3
MBI06_g32753_MAGBIO Magnolia biondii HOM05D005006 ORTHO05D005903 9.0e-06 54.3 153 32.0


User provided reference genes

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