Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc01g0010130 Simmondsia chinensis HOM05D007041 ORTHO05D008036 6.6e-51 204.1 135 100.0
COL.COLO4_06320 Corchorus olitorius HOM05D007041 ORTHO05D008036 9.3e-13 77.4 135 36.3
QL02p031389 Quercus lobata HOM05D007041 ORTHO05D008036 1.8e-11 73.2 109 42.2
TAR636G2915 Trochodendron aralioides HOM05D007041 ORTHO05D008036 1.8e-11 73.2 118 39.0
TAR629G2489 Trochodendron aralioides HOM05D007041 ORTHO05D008036 3.9e-11 72.0 121 38.8
CSS0049473 Camellia sinensis var. sinensis HOM05D007041 ORTHO05D008036 6.7e-11 71.2 112 38.4
CSS0019600 Camellia sinensis var. sinensis HOM05D007041 ORTHO05D008036 1.5e-10 70.1 112 37.5
RcHm_v2.0_Chr1g0358991 Rosa chinensis HOM05D007041 ORTHO05D008036 4.8e-09 65.1 124 43.5
MD07G1146000 Malus domestica HOM05D007041 ORTHO05D008036 8.2e-09 64.3 122 39.3
Nn1g01816 Nelumbo nucifera HOM05D007041 ORTHO05D008036 8.2e-09 64.3 95 37.9
Cpa.g.sc2382.1 Carica papaya HOM05D007041 ORTHO05D008036 1.8e-08 63.2 49 57.1
CiPaw.12G084900 Carya illinoinensis HOM05D007041 ORTHO05D008036 2.4e-08 62.8 106 35.8
Glyma.16G026800 Glycine max HOM05D007041 ORTHO05D008036 3.1e-08 62.4 39 66.7
FAN10G1361 Fragaria x ananassa HOM05D007041 ORTHO05D008036 6.9e-08 61.2 120 43.3
Prupe.2G184300 Prunus persica HOM05D007041 ORTHO05D008036 6.9e-08 61.2 121 36.4
EL10Ac1g00306 Beta vulgaris HOM05D007041 ORTHO05D008036 9.0e-08 60.8 30 83.3
FvH4_7g16050 Fragaria vesca HOM05D007041 ORTHO05D008036 9.0e-08 60.8 32 81.2
Glyma.07G057800 Glycine max HOM05D007041 ORTHO05D008036 9.0e-08 60.8 40 65.0
FAN10G2988 Fragaria x ananassa HOM05D007041 ORTHO05D008036 1.2e-07 60.5 29 86.2
Nn2g15118 Nelumbo nucifera HOM05D007041 ORTHO05D008036 1.2e-07 60.5 95 40.0
CiPaw.01G073300 Carya illinoinensis HOM05D007041 ORTHO05D008036 1.5e-07 60.1 37 64.9
Phvul.010G111500 Phaseolus vulgaris HOM05D007041 ORTHO05D008036 1.5e-07 60.1 39 64.1
Lj3g0003817 Lotus japonicus HOM05D007041 ORTHO05D008036 3.4e-07 58.9 40 65.0
VMungo0331G1585 Vigna mungo HOM05D007041 ORTHO05D008036 3.4e-07 58.9 39 64.1
Gohir.D08G147100 Gossypium hirsutum HOM05D007041 ORTHO05D008036 4.5e-07 58.5 29 82.8
Gorai.004G152600 Gossypium raimondii HOM05D007041 ORTHO05D008036 4.5e-07 58.5 29 82.8
Rhsim07G0006100 Rhododendron simsii HOM05D000337 ORTHO05D000297 4.5e-07 58.5 37 62.2
Thecc.01G346300 Theobroma cacao HOM05D007041 ORTHO05D008036 4.5e-07 58.5 114 31.6
AL5G44060 Arabidopsis lyrata HOM05D007041 ORTHO05D008036 5.8e-07 58.2 31 71.0
AT3G61660 Arabidopsis thaliana HOM05D007041 ORTHO05D008036 5.8e-07 58.2 31 71.0
Carub.0005s2835 Capsella rubella HOM05D007041 ORTHO05D008036 5.8e-07 58.2 31 71.0
CARHR171970 Cardamine hirsuta HOM05D007041 ORTHO05D008036 5.8e-07 58.2 31 71.0
FAN03G1744 Fragaria x ananassa HOM05D007041 ORTHO05D008036 5.8e-07 58.2 32 75.0
FAN06G3979 Fragaria x ananassa HOM05D007041 ORTHO05D008036 5.8e-07 58.2 32 78.1
Manes.02G012350 Manihot esculenta HOM05D007041 ORTHO05D008036 5.8e-07 58.2 39 61.5
Sp5g01745 Schrenkiella parvula HOM05D007041 ORTHO05D008036 5.8e-07 58.2 31 71.0
arahy.Tifrunner.gnm1.ann1.JU2T19 Arachis hypogaea HOM05D007041 ORTHO05D008036 7.6e-07 57.8 36 66.7
arahy.Tifrunner.gnm1.ann1.LKBY4F Arachis hypogaea HOM05D007041 ORTHO05D008036 7.6e-07 57.8 36 66.7
CANSAT56G1227 Cannabis sativa HOM05D007041 ORTHO05D008036 7.6e-07 57.8 112 35.7
Thhalv10006386m.g Eutrema salsugineum HOM05D007041 ORTHO05D008036 7.6e-07 57.8 31 71.0
FAN06G2039 Fragaria x ananassa HOM05D007041 ORTHO05D008036 7.6e-07 57.8 120 42.5
Gohir.A07G139300 Gossypium hirsutum HOM05D007041 ORTHO05D008036 7.6e-07 57.8 30 80.0
Sopen08g030330 Solanum pennellii HOM05D002045 ORTHO05D002014 7.6e-07 57.8 35 71.4
PGSC0003DMG400012302 Solanum tuberosum HOM05D007041 ORTHO05D008036 7.6e-07 57.8 35 71.4
Manes.02G012400 Manihot esculenta HOM05D007041 ORTHO05D008036 1.0e-06 57.4 39 61.5
C08p36510 Brassica napus HOM05D007041 ORTHO05D008036 1.3e-06 57.0 31 71.0
BolC8t51234H Brassica oleracea HOM05D007041 ORTHO05D008036 1.3e-06 57.0 31 71.0
Nn3g19073 Nelumbo nucifera HOM05D007041 ORTHO05D008036 1.3e-06 57.0 36 66.7
HPP92_007621 Vanilla planifolia HOM05D007041 ORTHO05D008036 1.3e-06 57.0 43 55.8
Gohir.D07G144400 Gossypium hirsutum HOM05D007041 ORTHO05D008036 1.7e-06 56.6 30 76.7
Gorai.001G156400 Gossypium raimondii HOM05D007041 ORTHO05D008036 1.7e-06 56.6 30 76.7
Lalb_Chr17g0342361 Lupinus albus HOM05D007041 ORTHO05D008036 1.7e-06 56.6 29 75.9
Nitab4.5_0007594g0010 Nicotiana tabacum HOM05D007041 ORTHO05D008036 1.7e-06 56.6 28 78.6
vmacro22515 Vaccinium macrocarpon HOM05D007041 ORTHO05D008036 1.7e-06 56.6 104 34.6
A09p53730 Brassica napus HOM05D007041 ORTHO05D008036 2.2e-06 56.2 107 36.4
BraA09t40795Z Brassica rapa HOM05D007041 ORTHO05D008036 2.2e-06 56.2 107 36.4
AUR62023489 Chenopodium quinoa HOM05D007041 ORTHO05D008036 2.2e-06 56.2 35 68.6
MELO3C006045.2 Cucumis melo HOM05D007041 ORTHO05D008036 2.2e-06 56.2 38 60.5
Nitab4.5_0000223g0230 Nicotiana tabacum HOM05D007041 ORTHO05D008036 2.2e-06 56.2 32 71.9
Prupe.5G115500 Prunus persica HOM05D007041 ORTHO05D008036 2.2e-06 56.2 32 68.8
Rhsim01G0170200 Rhododendron simsii HOM05D007041 ORTHO05D008036 2.2e-06 56.2 29 72.4
Thecc.03G293400 Theobroma cacao HOM05D007041 ORTHO05D008036 2.2e-06 56.2 35 62.9
vmacro22516 Vaccinium macrocarpon HOM05D007041 ORTHO05D008036 2.2e-06 56.2 29 72.4
vmacro22517 Vaccinium macrocarpon HOM05D007041 ORTHO05D008036 2.9e-06 55.8 114 29.8
CsaV3_3G008250 Cucumis sativus L. HOM05D007041 ORTHO05D008036 3.8e-06 55.5 36 61.1
CiPaw.02G039100 Carya illinoinensis HOM05D007041 ORTHO05D008036 4.9e-06 55.1 29 69.0
Nitab4.5_0000305g0050 Nicotiana tabacum HOM05D007041 ORTHO05D008036 4.9e-06 55.1 33 66.7
Oeu009948.1 Olea europaea HOM05D007041 ORTHO05D008036 4.9e-06 55.1 35 65.7
Potri.003G137600 Populus trichocarpa HOM05D007041 ORTHO05D008036 4.9e-06 55.1 30 66.7
Sed0010994 Sechium edule HOM05D007041 ORTHO05D008036 4.9e-06 55.1 29 72.4
CSS0039531 Camellia sinensis var. sinensis HOM05D007041 ORTHO05D008036 6.5e-06 54.7 34 61.8
Haze_08658 Corylus avellana HOM05D007041 ORTHO05D008036 6.5e-06 54.7 101 34.7
Nitab4.5_0004161g0040 Nicotiana tabacum HOM05D007041 ORTHO05D008036 6.5e-06 54.7 31 74.2
Peaxi162Scf00843g00001 Petunia axillaris HOM05D007041 ORTHO05D008036 6.5e-06 54.7 29 72.4
Actinidia28494 Actinidia chinensis HOM05D000017 ORTHO05D008036 8.4e-06 54.3 32 68.8
Potri.001G094000 Populus trichocarpa HOM05D007041 ORTHO05D008036 8.4e-06 54.3 30 70.0
Rhsim01G0170500 Rhododendron simsii HOM05D007041 ORTHO05D008036 8.4e-06 54.3 29 72.4


User provided reference genes

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