Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc01g0009660 Simmondsia chinensis HOM05D001221 ORTHO05D006671 3.9e-57 224.6 112 100.0
Dinv37627 Davidia involucrata HOM05D001221 ORTHO05D006671 4.7e-34 147.9 102 70.6
Dinv38928 Davidia involucrata HOM05D001221 ORTHO05D006671 7.9e-34 147.1 102 69.6
Actinidia14572 Actinidia chinensis HOM05D001221 ORTHO05D006671 3.0e-33 145.2 105 69.5
CSS0031672 Camellia sinensis var. sinensis HOM05D001221 ORTHO05D006671 5.1e-33 144.4 102 69.6
DCAR_008375 Daucus carota HOM05D001221 ORTHO05D006671 6.7e-33 144.1 102 68.6
Actinidia01996 Actinidia chinensis HOM05D001221 ORTHO05D006671 2.0e-32 142.5 105 66.7
TAR375G0548 Trochodendron aralioides HOM05D001221 ORTHO05D006671 5.7e-32 141.0 102 64.7
Rhsim02G0232900 Rhododendron simsii HOM05D001221 ORTHO05D006671 9.7e-32 140.2 105 66.7
DCAR_004622 Daucus carota HOM05D001221 ORTHO05D006671 1.3e-31 139.8 102 66.7
ECA240G1733 Erigeron canadensis HOM05D001221 ORTHO05D006671 1.3e-31 139.8 111 63.1
Peaxi162Scf00102g00163 Petunia axillaris HOM05D001221 ORTHO05D006671 1.3e-31 139.8 102 65.7
RhsimUnG0159800 Rhododendron simsii HOM05D001221 ORTHO05D006671 1.3e-31 139.8 102 68.6
Actinidia33749 Actinidia chinensis HOM05D001221 ORTHO05D006671 2.8e-31 138.7 102 66.7
Cc08_g14890 Coffea canephora HOM05D001221 ORTHO05D006671 2.8e-31 138.7 102 64.7
TAR374G1287 Trochodendron aralioides HOM05D001221 ORTHO05D006671 2.8e-31 138.7 102 63.7
Hma1.2p1_1123F.1_g259480 Hydrangea macrophylla HOM05D001221 ORTHO05D006671 3.7e-31 138.3 102 65.7
MSTRG.25621 Avicennia marina HOM05D001221 ORTHO05D006671 4.8e-31 137.9 100 68.0
EL10Ac5g12792 Beta vulgaris HOM05D001221 ORTHO05D006671 4.8e-31 137.9 103 68.0
Duzib068G0932 Durio zibethinus HOM05D001221 ORTHO05D006671 4.8e-31 137.9 102 65.7
CAN.G792.76 Capsicum annuum HOM05D001221 ORTHO05D006671 6.3e-31 137.5 102 61.8
Lsat_1_v5_gn_6_86460 Lactuca sativa HOM05D001221 ORTHO05D006671 6.3e-31 137.5 102 65.7
Eucgr.E00629 Eucalyptus grandis HOM05D001221 ORTHO05D006671 8.2e-31 137.1 102 65.7
TAR629G2779 Trochodendron aralioides HOM05D001221 ORTHO05D006671 8.2e-31 137.1 100 63.0
CsaV3_5G002700 Cucumis sativus L. HOM05D001221 ORTHO05D006671 1.1e-30 136.7 104 66.3
Manes.02G020701 Manihot esculenta HOM05D001221 ORTHO05D006671 1.1e-30 136.7 102 64.7
Sed0000398 Sechium edule HOM05D001221 ORTHO05D006671 1.4e-30 136.3 104 64.4
Oeu011041.1 Olea europaea HOM05D001221 ORTHO05D006671 1.8e-30 136.0 102 63.7
Aqoxy7G00283 Aquilegia oxysepala HOM05D001221 ORTHO05D006671 2.4e-30 135.6 102 62.7
Gorai.003G157600 Gossypium raimondii HOM05D001221 ORTHO05D006671 2.4e-30 135.6 102 63.7
Potri.003G129300 Populus trichocarpa HOM05D001221 ORTHO05D006671 3.1e-30 135.2 104 62.5
TPR.G12879 Trifolium pratense HOM05D001221 ORTHO05D006671 3.1e-30 135.2 101 67.3
CANSAT21G0250 Cannabis sativa HOM05D001221 ORTHO05D006671 4.1e-30 134.8 102 66.7
Gohir.A03G017600 Gossypium hirsutum HOM05D001221 ORTHO05D006671 4.1e-30 134.8 102 63.7
ClCG01G002590 Citrullus lanatus HOM05D001221 ORTHO05D006671 5.3e-30 134.4 104 64.4
Sabra01G0077400 Salix brachista HOM05D001221 ORTHO05D006671 5.3e-30 134.4 102 64.7
PGSC0003DMG400005822 Solanum tuberosum HOM05D001221 ORTHO05D006671 5.3e-30 134.4 102 60.8
CiPaw.11G133600 Carya illinoinensis HOM05D001221 ORTHO05D006671 6.9e-30 134.0 102 64.7
AUR62017186 Chenopodium quinoa HOM05D001221 ORTHO05D006671 6.9e-30 134.0 103 66.0
Gohir.D03G150432 Gossypium hirsutum HOM05D001221 ORTHO05D006671 6.9e-30 134.0 102 62.7
Medtr8g098485 Medicago truncatula HOM05D001221 ORTHO05D006671 6.9e-30 134.0 101 66.3
Nitab4.5_0002975g0030 Nicotiana tabacum HOM05D001221 ORTHO05D006671 6.9e-30 134.0 102 63.7
AUR62010699 Chenopodium quinoa HOM05D001221 ORTHO05D006671 9.1e-30 133.7 103 65.0
PGSC0003DMG400012201 Solanum tuberosum HOM05D001221 ORTHO05D006671 9.1e-30 133.7 103 65.0
CAN.G774.58 Capsicum annuum HOM05D001221 ORTHO05D006671 1.2e-29 133.3 103 65.0
COL.COLO4_34488 Corchorus olitorius HOM05D001221 ORTHO05D006671 1.2e-29 133.3 102 62.7
HanXRQChr03g0086851 Helianthus annuus HOM05D001221 ORTHO05D006671 1.2e-29 133.3 111 62.2
Lsat_1_v5_gn_6_5540 Lactuca sativa HOM05D001221 ORTHO05D006671 1.2e-29 133.3 102 62.7
Solyc08g008070.1 Solanum lycopersicum HOM05D001221 ORTHO05D006671 1.2e-29 133.3 102 59.8
Thecc.03G281300 Theobroma cacao HOM05D001221 ORTHO05D006671 1.2e-29 133.3 102 63.7
Cfa012211 Carpinus fangiana HOM05D001221 ORTHO05D006671 1.5e-29 132.9 102 66.7
CiPaw.12G091900 Carya illinoinensis HOM05D001221 ORTHO05D006671 1.5e-29 132.9 97 70.1
RcHm_v2.0_Chr7g0197241 Rosa chinensis HOM05D001221 ORTHO05D006671 1.5e-29 132.9 102 65.7
Ca_17519_v3 Cicer arietinum L. HOM05D001221 ORTHO05D006671 2.0e-29 132.5 105 62.9
QL12p032573 Quercus lobata HOM05D001221 ORTHO05D006671 2.0e-29 132.5 102 62.7
Solyc08g081230.1 Solanum lycopersicum HOM05D001221 ORTHO05D006671 2.0e-29 132.5 103 64.1
Duzib205G0255 Durio zibethinus HOM05D001221 ORTHO05D006671 2.6e-29 132.1 102 62.7
Nitab4.5_0001615g0010 Nicotiana tabacum HOM05D001221 ORTHO05D006671 2.6e-29 132.1 102 62.7
Sopen08g003940 Solanum pennellii HOM05D001221 ORTHO05D006671 2.6e-29 132.1 102 59.8
Haze_08799 Corylus avellana HOM05D001221 ORTHO05D006671 3.4e-29 131.7 102 65.7
Potri.001G102300 Populus trichocarpa HOM05D001221 ORTHO05D006671 3.4e-29 131.7 102 62.7
Cpa.g.sc214.16 Carica papaya HOM05D001221 ORTHO05D006671 4.5e-29 131.3 102 66.7
Sopen08g029540 Solanum pennellii HOM05D001221 ORTHO05D006671 4.5e-29 131.3 103 64.1
Ciclev10020033m.g Citrus clementina HOM05D001221 ORTHO05D006671 5.9e-29 131.0 102 60.8
HanXRQChr13g0416331 Helianthus annuus HOM05D001221 ORTHO05D006671 5.9e-29 131.0 111 61.3
MELO3C005687.2 Cucumis melo HOM05D001221 ORTHO05D006671 7.7e-29 130.6 104 63.5
Lj4g0007712 Lotus japonicus HOM05D001221 ORTHO05D006671 7.7e-29 130.6 101 64.4
PSO478G1078 Papaver somniferum HOM05D001221 ORTHO05D006671 1.0e-28 130.2 102 62.7
FvH4_5g02710 Fragaria vesca HOM05D001221 ORTHO05D006671 1.7e-28 129.4 102 63.7
FAN08G0663 Fragaria x ananassa HOM05D001221 ORTHO05D006671 1.7e-28 129.4 102 63.7
FAN18G1676 Fragaria x ananassa HOM05D001221 ORTHO05D006671 1.7e-28 129.4 102 63.7
FAN18G3923 Fragaria x ananassa HOM05D001221 ORTHO05D006671 1.7e-28 129.4 102 63.7
Gohir.A12G230400 Gossypium hirsutum HOM05D001221 ORTHO05D006671 1.7e-28 129.4 104 59.6
Gohir.D12G231500 Gossypium hirsutum HOM05D001221 ORTHO05D006671 1.7e-28 129.4 104 59.6
Phvul.002G290800 Phaseolus vulgaris HOM05D001221 ORTHO05D006671 2.2e-28 129.0 101 63.4
Sabra03G0091900 Salix brachista HOM05D001221 ORTHO05D006671 2.2e-28 129.0 104 59.6
SalBow1G2669 Salvia bowleyana HOM05D001221 ORTHO05D006671 2.2e-28 129.0 102 61.8
TWI60G1420 Tripterygium wilfordii HOM05D001221 ORTHO05D006671 2.2e-28 129.0 102 63.7
VMungo0251G3060 Vigna mungo HOM05D001221 ORTHO05D006671 2.2e-28 129.0 101 64.4
ECA246G3866 Erigeron canadensis HOM05D001221 ORTHO05D006671 2.9e-28 128.6 102 58.8
Migut.E01082 Erythranthe guttata HOM05D001221 ORTHO05D006671 2.9e-28 128.6 102 61.8
Gorai.008G247800 Gossypium raimondii HOM05D001221 ORTHO05D006671 2.9e-28 128.6 104 59.6
MD14G1107400 Malus domestica HOM05D001221 ORTHO05D006671 2.9e-28 128.6 100 65.0
PSO782G4433 Papaver somniferum HOM05D001221 ORTHO05D006671 2.9e-28 128.6 102 62.7
Lj8P219T29 Lonicera japonica HOM05D001221 ORTHO05D006671 3.8e-28 128.3 95 65.3
FAN13G2860 Fragaria x ananassa HOM05D001221 ORTHO05D006671 5.0e-28 127.9 102 62.7
Glyma.08G015700 Glycine max HOM05D001221 ORTHO05D006671 5.0e-28 127.9 101 63.4
Peaxi162Scf00119g00136 Petunia axillaris HOM05D001221 ORTHO05D006671 5.0e-28 127.9 102 62.7
FAN04G0472 Fragaria x ananassa HOM05D001221 ORTHO05D006671 6.5e-28 127.5 102 62.7
MD06G1086200 Malus domestica HOM05D001221 ORTHO05D006671 6.5e-28 127.5 100 64.0
ECA233G4771 Erigeron canadensis HOM05D001221 ORTHO05D006671 8.5e-28 127.1 102 57.8
GSVIVG01019733001 Vitis vinifera HOM05D001221 ORTHO05D006671 8.5e-28 127.1 102 60.8
HanXRQChr17g0533191 Helianthus annuus HOM05D001221 ORTHO05D006671 1.1e-27 126.7 102 56.9
Glyma.05G209000 Glycine max HOM05D001221 ORTHO05D006671 1.4e-27 126.3 101 62.4
PGR042G0854 Punica granatum HOM05D001221 ORTHO05D006671 1.4e-27 126.3 102 63.7
CDE06G2128 Ceratophyllum demersum HOM05D001221 ORTHO05D006671 1.9e-27 125.9 102 58.8
Lsat_1_v5_gn_3_6400 Lactuca sativa HOM05D001221 ORTHO05D006671 1.9e-27 125.9 102 59.8
Atru.chr9.2167 Acer truncatum HOM05D001221 ORTHO05D006671 2.5e-27 125.6 104 62.5
Lalb_Chr09g0332921 Lupinus albus HOM05D001221 ORTHO05D006671 4.2e-27 124.8 101 61.4
PGR031G0524 Punica granatum HOM05D001221 ORTHO05D006671 5.5e-27 124.4 92 65.2
Ah.05g180400 Amaranthus hybridus HOM05D001221 ORTHO05D006671 7.2e-27 124.0 106 60.4
Prupe.5G102800 Prunus persica HOM05D001221 ORTHO05D006671 7.2e-27 124.0 100 65.0
AT5G41330 Arabidopsis thaliana HOM05D001221 ORTHO05D006671 1.2e-26 123.2 102 61.8
SGA_v2.0_scaffold144G35934 Striga asiatica HOM05D001221 ORTHO05D006671 1.2e-26 123.2 102 61.8
MBI17_g35257_MAGBIO Magnolia biondii HOM05D001221 ORTHO05D006671 1.6e-26 122.9 104 57.7
AL7G48110 Arabidopsis lyrata HOM05D001221 ORTHO05D006671 4.7e-26 121.3 102 60.8
Sp7g00610 Schrenkiella parvula HOM05D001221 ORTHO05D006671 4.7e-26 121.3 102 58.8
SpUn0010_0090 Schrenkiella parvula HOM05D001221 ORTHO05D006671 4.7e-26 121.3 102 58.8
Thhalv10027773m.g Eutrema salsugineum HOM05D001221 ORTHO05D006671 6.1e-26 120.9 102 58.8
Lalb_Chr16g0390061 Lupinus albus HOM05D001221 ORTHO05D006671 6.1e-26 120.9 97 60.8
CARHR212990 Cardamine hirsuta HOM05D001221 ORTHO05D006671 1.0e-25 120.2 102 58.8
MBI18_g02845_MAGBIO Magnolia biondii HOM05D001221 ORTHO05D006671 2.3e-25 119.0 103 57.3
HPP92_025474 Vanilla planifolia HOM05D001221 ORTHO05D006671 5.2e-25 117.9 105 60.0
SHI07159 Sapria himalayana HOM05D001221 ORTHO05D006671 2.0e-24 115.9 105 53.3
Carub.0007s3416 Capsella rubella HOM05D001221 ORTHO05D006671 2.6e-24 115.5 102 57.8
THA.LOC104809381 Tarenaya hassleriana HOM05D001221 ORTHO05D006671 3.3e-24 115.2 102 56.9
unitig_26.g9699 Utricularia gibba HOM05D001597 ORTHO05D001512 3.3e-24 115.2 102 58.8
BcaB06g27613 Brassica carinata HOM05D001221 ORTHO05D006671 9.1e-22 107.1 102 55.9
C04p48370 Brassica napus HOM05D001221 ORTHO05D006671 5.9e-21 104.4 102 53.9
BolC4t26430H Brassica oleracea HOM05D001221 ORTHO05D006671 5.9e-21 104.4 102 53.9
BcaC02g08967 Brassica carinata HOM05D001221 ORTHO05D006671 1.3e-20 103.2 102 52.9
A04p14470 Brassica napus HOM05D001221 ORTHO05D006671 6.5e-20 100.9 102 52.9
BraA04t17092Z Brassica rapa HOM05D001221 ORTHO05D006671 6.5e-20 100.9 102 52.0
Aa31LG9G600 Aethionema arabicum HOM05D001221 ORTHO05D006671 8.5e-20 100.5 102 53.9
Zm00001eb305940 Zea mays HOM05D001221 ORTHO05D006671 8.5e-20 100.5 104 50.0
ATR0680G154 Amborella trichopoda HOM05D001221 ORTHO05D006671 1.5e-19 99.8 94 57.4
Os07g0419200 Oryza sativa ssp. japonica HOM05D001221 ORTHO05D006671 2.5e-19 99.0 102 48.0
Nn6g33391 Nelumbo nucifera HOM05D001221 ORTHO05D006671 3.0e-17 92.0 101 49.5
Lsat_1_v5_gn_4_91161 Lactuca sativa HOM05D000643 ORTHO05D000663 1.1e-14 83.6 89 48.3
CDE02G1953 Ceratophyllum demersum HOM05D001221 ORTHO05D006671 5.9e-13 77.8 65 56.9
Zm00001eb203610 Zea mays HOM05D001221 ORTHO05D006671 1.3e-12 76.6 79 51.9
Zm00001eb371450 Zea mays HOM05D001221 ORTHO05D006671 1.3e-12 76.6 79 51.9
Actinidia29973 Actinidia chinensis HOM05D001221 ORTHO05D006671 1.5e-11 73.2 102 43.1
HanXRQChr13g0394551 Helianthus annuus HOM05D001221 ORTHO05D006671 9.4e-11 70.5 58 56.9
RhsimUnG0159500 Rhododendron simsii HOM05D001221 ORTHO05D002870 1.6e-10 69.7 50 62.0
Psat7g032360 Pisum sativum HOM05D001221 ORTHO05D006671 2.1e-10 69.3 48 66.7
SEGI_09103 Sequoiadendron giganteum HOM05D001221 ORTHO05D006671 8.0e-10 67.4 108 40.7
Mapoly0022s0093 Marchantia polymorpha HOM05D001221 ORTHO05D009285 1.1e-06 57.0 81 37.0
SEGI_02298 Sequoiadendron giganteum HOM05D001221 ORTHO05D009285 3.1e-06 55.5 82 41.5


User provided reference genes

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