Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc01g0009600 Simmondsia chinensis HOM05D005411 ORTHO05D006463 4.1e-51 204.5 109 100.0
AUR62022799 Chenopodium quinoa HOM05D005411 ORTHO05D006463 1.5e-29 132.9 103 68.0
EL10Ac2g04672 Beta vulgaris HOM05D005411 ORTHO05D006463 1.1e-27 126.7 95 68.4
Hund16039 Selenicereus undatus HOM05D005411 ORTHO05D006463 1.8e-27 125.9 96 67.7
Aqoxy7G00317 Aquilegia oxysepala HOM05D005411 ORTHO05D006463 1.1e-24 116.7 108 58.3
Eucgr.H02261 Eucalyptus grandis HOM05D005411 ORTHO05D006463 1.5e-24 116.3 76 73.7
Eucgr.L02732 Eucalyptus grandis HOM05D005411 ORTHO05D006463 1.5e-24 116.3 76 73.7
GSVIVG01019751001 Vitis vinifera HOM05D005411 ORTHO05D006463 3.3e-24 115.2 73 76.7
Ciclev10022634m.g Citrus clementina HOM05D005411 ORTHO05D006463 4.2e-24 114.8 100 61.0
Actinidia02004 Actinidia chinensis HOM05D005411 ORTHO05D006463 5.5e-24 114.4 78 70.5
AUR62012163 Chenopodium quinoa HOM05D005411 ORTHO05D006463 7.2e-24 114.0 142 48.6
QL12p032900 Quercus lobata HOM05D005411 ORTHO05D006463 9.5e-24 113.6 103 58.3
MD06G1084200 Malus domestica HOM05D005411 ORTHO05D006463 1.2e-23 113.2 77 71.4
RcHm_v2.0_Chr7g0197541 Rosa chinensis HOM05D005411 ORTHO05D006463 2.1e-23 112.5 77 71.4
CSS0034062 Camellia sinensis var. sinensis HOM05D005411 ORTHO05D006463 2.8e-23 112.1 102 55.9
CAN.G774.50 Capsicum annuum HOM05D005411 ORTHO05D006463 2.8e-23 112.1 103 57.3
CiPaw.11G134900 Carya illinoinensis HOM05D005411 ORTHO05D006463 2.8e-23 112.1 78 69.2
Thecc.03G279100 Theobroma cacao HOM05D005411 ORTHO05D006463 2.8e-23 112.1 77 68.8
Hma1.2p1_0377F.1_g139300 Hydrangea macrophylla HOM05D005411 ORTHO05D006463 3.6e-23 111.7 92 63.0
ECA233G5385 Erigeron canadensis HOM05D005411 ORTHO05D006463 4.7e-23 111.3 93 60.2
Cc08_g14780 Coffea canephora HOM05D005411 ORTHO05D006463 6.1e-23 110.9 73 72.6
Lalb_Chr09g0332851 Lupinus albus HOM05D005411 ORTHO05D006463 6.1e-23 110.9 96 58.3
Manes.02G019300 Manihot esculenta HOM05D005411 ORTHO05D006463 6.1e-23 110.9 100 59.0
FAN04G3034 Fragaria x ananassa HOM05D005411 ORTHO05D006463 8.0e-23 110.5 77 70.1
FAN13G2772 Fragaria x ananassa HOM05D005411 ORTHO05D006463 8.0e-23 110.5 77 70.1
MBI18_g42863_MAGBIO Magnolia biondii HOM05D005411 ORTHO05D006463 1.0e-22 110.2 73 72.6
Solyc08g081130.4 Solanum lycopersicum HOM05D005411 ORTHO05D006463 1.0e-22 110.2 88 64.8
Sopen08g029430 Solanum pennellii HOM05D005411 ORTHO05D006463 1.0e-22 110.2 88 64.8
PGSC0003DMG403012339 Solanum tuberosum HOM05D005411 ORTHO05D006463 1.0e-22 110.2 88 64.8
MELO3C016353.2 Cucumis melo HOM05D005411 ORTHO05D006463 1.4e-22 109.8 103 54.4
MD14G1105400 Malus domestica HOM05D005411 ORTHO05D006463 1.4e-22 109.8 77 68.8
Rhsim07G0090400 Rhododendron simsii HOM05D005411 ORTHO05D006463 1.4e-22 109.8 102 54.9
TWI60G1258 Tripterygium wilfordii HOM05D005411 ORTHO05D006463 1.4e-22 109.8 77 68.8
FvH4_5g02510 Fragaria vesca HOM05D005411 ORTHO05D006463 1.8e-22 109.4 77 68.8
FAN18G0348 Fragaria x ananassa HOM05D005411 ORTHO05D006463 1.8e-22 109.4 77 68.8
HanXRQChr13g0394241 Helianthus annuus HOM05D005411 ORTHO05D006463 1.8e-22 109.4 102 54.9
Medtr8g098255 Medicago truncatula HOM05D005411 ORTHO05D006463 1.8e-22 109.4 107 51.4
Gohir.A03G016600 Gossypium hirsutum HOM05D005411 ORTHO05D006463 2.3e-22 109.0 77 67.5
Lsat_1_v5_gn_6_6580 Lactuca sativa HOM05D005411 ORTHO05D006463 2.3e-22 109.0 96 58.3
Cfa012226 Carpinus fangiana HOM05D005411 ORTHO05D006463 3.0e-22 108.6 89 60.7
Nn1g01526 Nelumbo nucifera HOM05D005411 ORTHO05D006463 3.0e-22 108.6 94 56.4
Nitab4.5_0013184g0010 Nicotiana tabacum HOM05D005411 ORTHO05D006463 3.0e-22 108.6 81 64.2
PGR042G1580 Punica granatum HOM05D005411 ORTHO05D006463 4.0e-22 108.2 77 68.8
Gorai.003G158500 Gossypium raimondii HOM05D005411 ORTHO05D006463 5.2e-22 107.8 104 57.7
vmacro22820 Vaccinium macrocarpon HOM05D005411 ORTHO05D006463 5.2e-22 107.8 103 58.3
arahy.Tifrunner.gnm1.ann1.FJ1DNZ Arachis hypogaea HOM05D005411 ORTHO05D006463 6.8e-22 107.5 119 47.9
arahy.Tifrunner.gnm1.ann1.P2DUDW Arachis hypogaea HOM05D005411 ORTHO05D006463 6.8e-22 107.5 119 47.9
Dinv38942 Davidia involucrata HOM05D005411 ORTHO05D006463 6.8e-22 107.5 80 65.0
FAN08G0497 Fragaria x ananassa HOM05D005411 ORTHO05D006463 6.8e-22 107.5 81 66.7
Actinidia14564 Actinidia chinensis HOM05D005411 ORTHO05D006463 1.2e-21 106.7 78 64.1
CsaV3_4G005950 Cucumis sativus L. HOM05D005411 ORTHO05D006463 1.2e-21 106.7 103 53.4
Nitab4.5_0001615g0100 Nicotiana tabacum HOM05D005411 ORTHO05D006463 1.2e-21 106.7 81 60.5
TAR374G0701 Trochodendron aralioides HOM05D005411 ORTHO05D006463 1.2e-21 106.7 78 65.4
vmacro11335 Vaccinium macrocarpon HOM05D005411 ORTHO05D006463 1.2e-21 106.7 121 51.2
Dinv38939 Davidia involucrata HOM05D005411 ORTHO05D006463 1.5e-21 106.3 80 63.8
ClCG07G008090 Citrullus lanatus HOM05D005411 ORTHO05D006463 2.0e-21 105.9 95 57.9
Peaxi162Scf00119g00941 Petunia axillaris HOM05D005411 ORTHO05D006463 2.0e-21 105.9 93 57.0
Potri.001G103800 Populus trichocarpa HOM05D005411 ORTHO05D006463 2.0e-21 105.9 78 64.1
Sabra01G0078400 Salix brachista HOM05D005411 ORTHO05D006463 2.0e-21 105.9 78 64.1
Phvul.002G289800 Phaseolus vulgaris HOM05D005411 ORTHO05D006463 2.6e-21 105.5 76 65.8
Glyma.05G208200 Glycine max HOM05D005411 ORTHO05D006463 3.4e-21 105.1 76 67.1
PSO782G3895 Papaver somniferum HOM05D005411 ORTHO05D006463 4.4e-21 104.8 115 51.3
PSO478G4730 Papaver somniferum HOM05D005411 ORTHO05D006463 9.8e-21 103.6 115 50.4
SGA_v2.0_scaffold173G39183 Striga asiatica HOM05D005411 ORTHO05D006463 9.8e-21 103.6 78 61.5
Sed0017646 Sechium edule HOM05D005411 ORTHO05D006463 1.3e-20 103.2 90 57.8
ATR0680G335 Amborella trichopoda HOM05D005411 ORTHO05D006463 1.7e-20 102.8 73 67.1
CANSAT78G0141 Cannabis sativa HOM05D005411 ORTHO05D006463 1.7e-20 102.8 122 46.7
Gohir.D03G151300 Gossypium hirsutum HOM05D005411 ORTHO05D006463 1.7e-20 102.8 103 56.3
VMungo0251G3187 Vigna mungo HOM05D005411 ORTHO05D006463 1.7e-20 102.8 103 53.4
THA.LOC104814574 Tarenaya hassleriana HOM05D005411 ORTHO05D006463 2.2e-20 102.4 80 61.2
Prupe.5G100600 Prunus persica HOM05D005411 ORTHO05D006463 2.8e-20 102.1 86 58.1
Ca_17530_v3 Cicer arietinum L. HOM05D005411 ORTHO05D006463 3.7e-20 101.7 119 50.4
Psat7g033000 Pisum sativum HOM05D005411 ORTHO05D006463 3.7e-20 101.7 79 59.5
TPR.G12871 Trifolium pratense HOM05D005411 ORTHO05D006463 1.1e-19 100.1 109 50.5
CDE11G0686 Ceratophyllum demersum HOM05D003133 ORTHO05D006463 1.4e-19 99.8 76 60.5
Oeu011043.2 Olea europaea HOM05D005411 ORTHO05D006463 1.4e-19 99.8 75 62.7
vmacro13959 Vaccinium macrocarpon HOM05D005411 ORTHO05D006463 2.4e-19 99.0 125 45.6
Lj8E221T1 Lonicera japonica HOM05D005411 ORTHO05D006463 3.1e-19 98.6 67 70.1
AL7G30140 Arabidopsis lyrata HOM05D005411 ORTHO05D006463 5.4e-19 97.8 79 58.2
Thhalv10026496m.g Eutrema salsugineum HOM05D005411 ORTHO05D006463 5.4e-19 97.8 97 53.6
Aa31LG9G10800 Aethionema arabicum HOM05D005411 ORTHO05D006463 9.2e-19 97.1 77 58.4
Migut.A00759 Erythranthe guttata HOM05D005411 ORTHO05D006463 9.2e-19 97.1 78 59.0
AT4G23330 Arabidopsis thaliana HOM05D005411 ORTHO05D006463 1.6e-18 96.3 79 57.0
MSTRG.25610 Avicennia marina HOM05D005411 ORTHO05D006463 2.0e-18 95.9 79 57.0
BraA03t14482Z Brassica rapa HOM05D000022 ORTHO05D000071 2.0e-18 95.9 94 51.1
Carub.0007s1784 Capsella rubella HOM05D005411 ORTHO05D006463 2.0e-18 95.9 79 58.2
Lj4g0004308 Lotus japonicus HOM05D005411 ORTHO05D006463 2.0e-18 95.9 112 45.5
BcaC03g18356 Brassica carinata HOM05D005411 ORTHO05D006463 2.7e-18 95.5 82 56.1
A01p14570 Brassica napus HOM05D005411 ORTHO05D006463 2.7e-18 95.5 96 53.1
C02p64340 Brassica napus HOM05D005411 ORTHO05D006463 2.7e-18 95.5 82 56.1
BraA01t01399Z Brassica rapa HOM05D005411 ORTHO05D006463 2.7e-18 95.5 96 53.1
BcaNung01456 Brassica carinata HOM05D005411 ORTHO05D006463 3.5e-18 95.1 94 51.1
C07p52580 Brassica napus HOM05D000022 ORTHO05D000071 3.5e-18 95.1 94 51.1
BolC7t45755H Brassica oleracea HOM05D005411 ORTHO05D006463 3.5e-18 95.1 94 51.1
CDE09G0994 Ceratophyllum demersum HOM05D005411 ORTHO05D006463 3.5e-18 95.1 76 56.6
SalBow4G3209 Salvia bowleyana HOM05D005411 ORTHO05D006463 3.5e-18 95.1 73 60.3
BcaC09g51012 Brassica carinata HOM05D005411 ORTHO05D006463 1.0e-17 93.6 98 51.0
A03p54210 Brassica napus HOM05D005411 ORTHO05D006463 1.0e-17 93.6 79 55.7
BolC1t01733H Brassica oleracea HOM05D005411 ORTHO05D006463 1.0e-17 93.6 98 51.0
CARHR230670 Cardamine hirsuta HOM05D005411 ORTHO05D006463 1.0e-17 93.6 103 45.6
unitig_46.g18551 Utricularia gibba HOM05D005411 ORTHO05D006463 1.0e-17 93.6 78 57.7
Zm00001eb104990 Zea mays HOM05D005411 ORTHO05D006463 1.3e-17 93.2 69 62.3
SEGI_09083 Sequoiadendron giganteum HOM05D005411 ORTHO05D006463 2.3e-17 92.4 74 58.1
BcaNung03266 Brassica carinata HOM05D005411 ORTHO05D006463 2.9e-17 92.0 76 56.6
C01p18020 Brassica napus HOM05D005411 ORTHO05D006463 3.8e-17 91.7 97 50.5
CiPaw.12G092800 Carya illinoinensis HOM05D005411 ORTHO05D006463 1.1e-16 90.1 75 54.7
Atru.chr9.2185 Acer truncatum HOM05D005411 ORTHO05D006463 1.5e-16 89.7 60 73.3
CSS0044618 Camellia sinensis var. sinensis HOM05D005411 ORTHO05D006463 1.5e-16 89.7 61 72.1
Os07g0483400 Oryza sativa ssp. japonica HOM05D005411 ORTHO05D006463 1.9e-16 89.4 73 56.2
Hma1.2p1_0377F.1_g139290 Hydrangea macrophylla HOM05D005411 ORTHO05D006463 5.6e-16 87.8 73 65.8
Potri.003G127900 Populus trichocarpa HOM05D005411 ORTHO05D006463 1.5e-13 79.7 101 45.5
Oeu047371.1 Olea europaea HOM05D005411 ORTHO05D006463 5.8e-13 77.8 66 57.6
SMO329G0027 Selaginella moellendorffii HOM05D005411 ORTHO05D006463 3.7e-12 75.1 67 52.2
SMO358G0504 Selaginella moellendorffii HOM05D005411 ORTHO05D006463 3.7e-12 75.1 67 52.2
Pp3c11_2200 Physcomitrium patens HOM05D005411 ORTHO05D006463 8.3e-12 73.9 101 39.6
SHI07138 Sapria himalayana HOM05D005411 ORTHO05D006463 8.3e-12 73.9 62 58.1
Duzib205G1808 Durio zibethinus HOM05D005411 ORTHO05D006463 5.4e-11 71.2 102 45.1
Mapoly0008s0209 Marchantia polymorpha HOM05D005411 ORTHO05D006463 9.2e-11 70.5 67 49.3
AagrBONN_evm.TU.Sc2ySwM_369.479 Anthoceros agrestis HOM05D005411 ORTHO05D006463 1.2e-10 70.1 67 50.7
Duzib084G0828 Durio zibethinus HOM05D005411 ORTHO05D006463 3.9e-09 65.1 103 40.8
BolC5t34770H Brassica oleracea HOM05D005411 ORTHO05D006463 1.1e-08 63.5 59 54.2
Sabra17G0003100 Salix brachista HOM05D005411 ORTHO05D006463 5.6e-08 61.2 47 63.8
Sabra17G0003800 Salix brachista HOM05D005411 ORTHO05D006463 5.6e-08 61.2 47 63.8
Hund13808 Selenicereus undatus HOM05D005411 ORTHO05D006463 7.3e-08 60.8 55 67.3
BcaNung00981 Brassica carinata HOM05D005411 ORTHO05D006463 1.2e-07 60.1 109 37.6
Sabra18G0123000 Salix brachista HOM05D005411 ORTHO05D006463 2.1e-07 59.3 47 61.7
Sabra14G0123800 Salix brachista HOM05D005411 ORTHO05D006463 4.7e-07 58.2 47 61.7
BcaB05g22557 Brassica carinata HOM05D002513 ORTHO05D002720 1.8e-06 56.2 75 42.7
Eucgr.H02258 Eucalyptus grandis HOM05D005411 ORTHO05D006463 1.8e-06 56.2 37 78.4
COL.COLO4_34468 Corchorus olitorius HOM05D005411 ORTHO05D006463 5.2e-06 54.7 39 71.8


User provided reference genes

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