Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc01g0009550 Simmondsia chinensis HOM05D004296 ORTHO05D005045 2.7e-152 542.0 273 100.0
AUR62007249 Chenopodium quinoa HOM05D004296 ORTHO05D005045 1.1e-73 280.8 327 52.0
Ah.12g054620 Amaranthus hybridus HOM05D004296 ORTHO05D005045 4.0e-71 272.3 318 50.0
Hund05589 Selenicereus undatus HOM05D004296 ORTHO05D005045 2.2e-69 266.5 287 55.1
EL10Ac8g19045 Beta vulgaris HOM05D004296 ORTHO05D005045 1.1e-68 264.2 297 50.5
TAR268G0002 Trochodendron aralioides HOM05D004296 ORTHO05D005045 1.4e-68 263.8 308 49.7
Cfa013198 Carpinus fangiana HOM05D004296 ORTHO05D005045 2.4e-68 263.1 291 52.2
Dinv38945 Davidia involucrata HOM05D004296 ORTHO05D005045 5.4e-68 261.9 286 51.7
CSS0030285 Camellia sinensis var. sinensis HOM05D004296 ORTHO05D005045 2.0e-67 260.0 290 51.4
Haze_22818 Corylus avellana HOM05D004296 ORTHO05D005045 2.0e-67 260.0 290 52.4
QL12p012797 Quercus lobata HOM05D004296 ORTHO05D005045 2.0e-67 260.0 289 51.9
Hma1.2p1_0896F.1_g234000 Hydrangea macrophylla HOM05D004296 ORTHO05D005045 1.5e-65 253.8 289 49.1
Manes.01G061800 Manihot esculenta HOM05D004296 ORTHO05D005045 1.2e-64 250.8 288 51.4
Atru.chr9.2192 Acer truncatum HOM05D004296 ORTHO05D005045 8.0e-64 248.1 286 51.4
CSS0003782 Camellia sinensis var. sinensis HOM05D004296 ORTHO05D005045 3.1e-63 246.1 290 50.7
TAR375G1065 Trochodendron aralioides HOM05D004296 ORTHO05D005045 8.9e-63 244.6 309 46.9
COL.COLO4_34461 Corchorus olitorius HOM05D001502 ORTHO05D002950 1.9e-60 236.9 274 50.0
Thecc.03G278500 Theobroma cacao HOM05D004296 ORTHO05D005045 7.1e-60 235.0 291 49.5
Duzib068G1191 Durio zibethinus HOM05D004296 ORTHO05D005045 9.2e-60 234.6 292 50.0
Rhsim02G0231000 Rhododendron simsii HOM05D004296 ORTHO05D005045 1.6e-59 233.8 294 48.3
Actinidia02008 Actinidia chinensis HOM05D004296 ORTHO05D005045 1.0e-58 231.1 283 48.8
SalBow1G8718 Salvia bowleyana HOM05D004296 ORTHO05D005045 1.3e-58 230.7 284 46.8
TWI18G1338 Tripterygium wilfordii HOM05D004296 ORTHO05D005045 1.7e-58 230.3 295 47.8
Hund17074 Selenicereus undatus HOM05D004296 ORTHO05D005045 3.0e-58 229.6 280 51.1
AUR62018749 Chenopodium quinoa HOM05D004296 ORTHO05D005045 1.5e-57 227.3 329 45.9
CiPaw.08G074700 Carya illinoinensis HOM05D004296 ORTHO05D005045 4.3e-57 225.7 315 43.2
Gohir.D05G298900 Gossypium hirsutum HOM05D004296 ORTHO05D005045 1.6e-56 223.8 270 49.6
CSS0037206 Camellia sinensis var. sinensis HOM05D004296 ORTHO05D005045 3.6e-56 222.6 289 47.1
Gorai.009G316100 Gossypium raimondii HOM05D004296 ORTHO05D005045 1.1e-55 221.1 270 49.3
Gohir.A05G299133 Gossypium hirsutum HOM05D004296 ORTHO05D005045 1.4e-55 220.7 270 49.3
Glyma.01G220000 Glycine max HOM05D004296 ORTHO05D005045 2.3e-55 219.9 290 47.6
TWI36G1592 Tripterygium wilfordii HOM05D004296 ORTHO05D005045 8.9e-55 218.0 279 47.7
Cpa.g.sc45.44 Carica papaya HOM05D004296 ORTHO05D005045 1.2e-54 217.6 296 45.3
RcHm_v2.0_Chr7g0197731 Rosa chinensis HOM05D004296 ORTHO05D005045 2.6e-54 216.5 305 43.3
Lj8C228T3 Lonicera japonica HOM05D004296 ORTHO05D005045 7.5e-54 214.9 364 38.5
Nn1g01503 Nelumbo nucifera HOM05D004296 ORTHO05D005045 1.3e-53 214.2 311 44.1
Medtr0768s0010 Medicago truncatula HOM05D004296 ORTHO05D005045 2.2e-53 213.4 290 45.9
Medtr6g011320 Medicago truncatula HOM05D004296 ORTHO05D005045 2.2e-53 213.4 290 44.5
Eucgr.D01846 Eucalyptus grandis HOM05D004296 ORTHO05D005045 6.4e-53 211.8 293 44.4
DCAR_000614 Daucus carota HOM05D004296 ORTHO05D005045 1.4e-52 210.7 294 42.5
TPR.G3981 Trifolium pratense HOM05D004296 ORTHO05D005045 1.9e-52 210.3 291 46.4
Actinidia14560 Actinidia chinensis HOM05D004296 ORTHO05D005045 2.4e-52 209.9 283 47.7
MSTRG.11985 Avicennia marina HOM05D004296 ORTHO05D005045 4.1e-52 209.1 295 46.1
Ciclev10002111m.g Citrus clementina HOM05D004296 ORTHO05D005045 5.4e-52 208.8 284 44.7
Glyma.20G061500 Glycine max HOM05D004296 ORTHO05D005045 1.2e-51 207.6 282 47.5
Migut.A00767 Erythranthe guttata HOM05D004296 ORTHO05D005045 2.7e-51 206.5 286 47.6
Prupe.5G099900 Prunus persica HOM05D004296 ORTHO05D005045 6.0e-51 205.3 394 36.8
PGR031G2604 Punica granatum HOM05D004296 ORTHO05D005045 1.7e-50 203.8 221 51.6
FAN07G0166 Fragaria x ananassa HOM05D004296 ORTHO05D005045 5.1e-50 202.2 300 45.7
LjContig00312_ERROPOS870357g0005117 Lotus japonicus HOM05D004296 ORTHO05D005045 5.1e-50 202.2 290 42.4
MBI18_g42175_MAGBIO Magnolia biondii HOM05D004296 ORTHO05D005045 5.1e-50 202.2 298 44.0
QL05p087372 Quercus lobata HOM05D004296 ORTHO05D005045 8.6e-50 201.4 309 42.1
SGA_v2.0_scaffold96G28938 Striga asiatica HOM05D004296 ORTHO05D005045 8.6e-50 201.4 285 45.3
VMungo1080G1277 Vigna mungo HOM05D004296 ORTHO05D005045 8.6e-50 201.4 280 44.3
Lj8A231T11 Lonicera japonica HOM05D004296 ORTHO05D005045 1.9e-49 200.3 388 35.3
Cc10_g03910 Coffea canephora HOM05D004296 ORTHO05D005045 2.5e-49 199.9 245 49.4
CAN.G774.35 Capsicum annuum HOM05D004296 ORTHO05D005045 7.3e-49 198.4 335 43.0
Phvul.002G157700 Phaseolus vulgaris HOM05D004296 ORTHO05D005045 7.3e-49 198.4 292 43.2
MSTRG.11987 Avicennia marina HOM05D004296 ORTHO05D005045 1.2e-48 197.6 274 45.6
Phvul.005G126900 Phaseolus vulgaris HOM05D004296 ORTHO05D005045 6.2e-48 195.3 290 42.1
FvH4_5g02380 Fragaria vesca HOM05D004296 ORTHO05D005045 1.8e-47 193.7 282 41.1
FAN04G1575 Fragaria x ananassa HOM05D004296 ORTHO05D005045 1.8e-47 193.7 283 41.7
PGSC0003DMG400012342 Solanum tuberosum HOM05D004296 ORTHO05D005045 1.8e-47 193.7 346 38.7
Lsat_1_v5_gn_6_87401 Lactuca sativa HOM05D004296 ORTHO05D005045 6.8e-47 191.8 266 44.0
Peaxi162Scf00119g00828 Petunia axillaris HOM05D004296 ORTHO05D005045 1.2e-46 191.0 337 39.5
Sopen04g002480 Solanum pennellii HOM05D004296 ORTHO05D005045 2.6e-46 189.9 371 37.7
Lsat_1_v5_gn_5_92680 Lactuca sativa HOM05D004296 ORTHO05D005045 3.4e-46 189.5 265 43.4
Lj2A555T5 Lonicera japonica HOM05D004296 ORTHO05D005045 3.4e-46 189.5 380 36.3
Nitab4.5_0011683g0020 Nicotiana tabacum HOM05D004296 ORTHO05D005045 7.6e-46 188.3 338 39.3
PGSC0003DMG403005999 Solanum tuberosum HOM05D004296 ORTHO05D005045 1.3e-45 187.6 370 35.7
MD14G1104200 Malus domestica HOM05D004296 ORTHO05D005045 2.2e-45 186.8 193 50.8
Oeu009155.1 Olea europaea HOM05D004296 ORTHO05D005045 2.2e-45 186.8 311 40.2
FAN12G3540 Fragaria x ananassa HOM05D004296 ORTHO05D005045 2.9e-45 186.4 298 42.6
Lalb_Chr20g0109121 Lupinus albus HOM05D004296 ORTHO05D005045 2.9e-45 186.4 278 40.6
CSS0027171 Camellia sinensis var. sinensis HOM05D004296 ORTHO05D005045 6.4e-45 185.3 157 61.1
CSS0028138 Camellia sinensis var. sinensis HOM05D004296 ORTHO05D005045 6.4e-45 185.3 157 61.1
arahy.Tifrunner.gnm1.ann1.SKNY54 Arachis hypogaea HOM05D004296 ORTHO05D005045 1.1e-44 184.5 285 40.4
Psat7g254600 Pisum sativum HOM05D004296 ORTHO05D005045 1.4e-44 184.1 239 45.6
SalBow7G4152 Salvia bowleyana HOM05D004296 ORTHO05D005045 1.4e-44 184.1 256 43.8
ClCG07G008080 Citrullus lanatus HOM05D004296 ORTHO05D005045 3.2e-44 183.0 296 42.6
Nitab4.5_0001615g0200 Nicotiana tabacum HOM05D004296 ORTHO05D005045 3.2e-44 183.0 337 39.8
THA.LOC104809392 Tarenaya hassleriana HOM05D004296 ORTHO05D005045 3.2e-44 183.0 285 43.2
Cpa.g.sc39.99 Carica papaya HOM05D004296 ORTHO05D005045 1.2e-43 181.0 167 56.3
HanXRQChr03g0086721 Helianthus annuus HOM05D004296 ORTHO05D005045 1.2e-43 181.0 316 40.5
Potri.003G127200 Populus trichocarpa HOM05D004296 ORTHO05D005045 1.6e-43 180.6 336 38.7
HanXRQChr03g0086731 Helianthus annuus HOM05D004296 ORTHO05D005045 2.1e-43 180.3 316 40.2
FAN12G1413 Fragaria x ananassa HOM05D004296 ORTHO05D005045 4.6e-43 179.1 275 43.3
Aqoxy3G03757 Aquilegia oxysepala HOM05D004296 ORTHO05D005045 6.0e-43 178.7 276 43.1
Solyc04g007420.4 Solanum lycopersicum HOM05D004296 ORTHO05D005045 1.0e-42 177.9 185 51.9
Solyc08g081040.3 Solanum lycopersicum HOM05D004296 ORTHO05D005045 1.7e-42 177.2 375 34.4
arahy.Tifrunner.gnm1.ann1.KQ253K Arachis hypogaea HOM05D004296 ORTHO05D005045 2.3e-42 176.8 285 39.3
FvH4_4g36830 Fragaria vesca HOM05D004296 ORTHO05D005045 2.3e-42 176.8 273 43.2
CDE01G0178 Ceratophyllum demersum HOM05D004296 ORTHO05D005045 3.0e-42 176.4 276 40.6
FAN08G1593 Fragaria x ananassa HOM05D004296 ORTHO05D005045 3.0e-42 176.4 284 40.5
MELO3C016352.2 Cucumis melo HOM05D004296 ORTHO05D005045 1.5e-41 174.1 347 37.2
Psat1g061240 Pisum sativum HOM05D004296 ORTHO05D005045 3.3e-41 172.9 166 52.4
Sopen08g029360 Solanum pennellii HOM05D004296 ORTHO05D005045 4.3e-41 172.6 158 55.1
unitig_32.g11599 Utricularia gibba HOM05D004296 ORTHO05D005045 4.3e-41 172.6 284 39.8
FAN17G1800 Fragaria x ananassa HOM05D004296 ORTHO05D005045 5.6e-41 172.2 302 41.4
PGSC0003DMG401005999 Solanum tuberosum HOM05D004296 ORTHO05D005045 9.6e-41 171.4 190 51.1
CDE04G2006 Ceratophyllum demersum HOM05D004296 ORTHO05D005045 2.1e-40 170.2 273 39.6
CsaV3_4G005960 Cucumis sativus L. HOM05D004296 ORTHO05D005045 3.6e-40 169.5 332 37.7
MD07G1059600 Malus domestica HOM05D004296 ORTHO05D005045 3.6e-40 169.5 328 36.6
TPR.G4254 Trifolium pratense HOM05D004296 ORTHO05D005045 4.8e-40 169.1 273 40.7
PSO782G5383 Papaver somniferum HOM05D004296 ORTHO05D005045 8.1e-40 168.3 352 37.8
PSO478G0046 Papaver somniferum HOM05D004296 ORTHO05D005045 1.4e-39 167.5 352 39.2
Peaxi162Scf00014g00082 Petunia axillaris HOM05D004296 ORTHO05D005045 1.4e-39 167.5 317 37.9
ECA240G3612 Erigeron canadensis HOM05D004296 ORTHO05D005045 1.2e-38 164.5 207 46.9
BcaC02g08973 Brassica carinata HOM05D004296 ORTHO05D005045 2.6e-38 163.3 260 40.8
BolC4t26425H Brassica oleracea HOM05D004296 ORTHO05D005045 2.6e-38 163.3 260 40.8
Carub.0007s3425 Capsella rubella HOM05D004296 ORTHO05D005045 3.4e-38 162.9 289 43.9
C04p48320 Brassica napus HOM05D004296 ORTHO05D005045 4.4e-38 162.5 257 43.6
Aqoxy3G00118 Aquilegia oxysepala HOM05D004296 ORTHO05D005045 2.2e-37 160.2 276 40.9
FAN07G0122 Fragaria x ananassa HOM05D004296 ORTHO05D005045 2.2e-37 160.2 279 40.5
Oeu020615.1 Olea europaea HOM05D004296 ORTHO05D005045 2.2e-37 160.2 337 33.5
HPP92_021782 Vanilla planifolia HOM05D004296 ORTHO05D005045 4.9e-37 159.1 275 37.1
Sed0022715 Sechium edule HOM05D004296 ORTHO05D005045 6.4e-37 158.7 378 33.3
Thhalv10028247m.g Eutrema salsugineum HOM05D004296 ORTHO05D005045 1.1e-36 157.9 248 43.5
Sp7g00660 Schrenkiella parvula HOM05D004296 ORTHO05D005045 1.1e-36 157.9 245 41.6
SpUn0010_0140 Schrenkiella parvula HOM05D004296 ORTHO05D005045 1.1e-36 157.9 245 41.6
CARHR213060 Cardamine hirsuta HOM05D004296 ORTHO05D005045 2.4e-36 156.8 247 40.5
SHI24854 Sapria himalayana HOM05D004296 ORTHO05D005045 4.2e-36 156.0 224 42.9
arahy.Tifrunner.gnm1.ann1.CEX2YD Arachis hypogaea HOM05D004296 ORTHO05D005045 2.1e-35 153.7 199 43.2
AT5G41270 Arabidopsis thaliana HOM05D004296 ORTHO05D005045 6.0e-35 152.1 284 40.1
Haze_21601 Corylus avellana HOM05D004296 ORTHO05D005045 1.7e-34 150.6 219 44.7
Rhsim02G0230400 Rhododendron simsii HOM05D004296 ORTHO05D005045 2.3e-34 150.2 264 40.5
AL7G48180 Arabidopsis lyrata HOM05D004296 ORTHO05D005045 1.1e-33 147.9 258 40.7
PSO210G3801 Papaver somniferum HOM05D004296 ORTHO05D005045 3.3e-33 146.4 176 47.7
Thhalv10027895m.g Eutrema salsugineum HOM05D004296 ORTHO05D005045 4.3e-33 146.0 248 42.3
Aa31LG9G640 Aethionema arabicum HOM05D004296 ORTHO05D005045 1.6e-32 144.1 256 40.6
A04p14410 Brassica napus HOM05D004296 ORTHO05D005045 2.4e-31 140.2 217 41.9
Psat0s5346g0040 Pisum sativum HOM05D002378 ORTHO05D002936 3.1e-31 139.8 206 42.7
BcaB06g27609 Brassica carinata HOM05D004296 ORTHO05D005045 1.2e-30 137.9 215 42.8
Lalb_Chr09g0320981 Lupinus albus HOM05D004296 ORTHO05D005045 1.2e-30 137.9 224 41.5
BraA04t17088Z Brassica rapa HOM05D004296 ORTHO05D005045 2.6e-30 136.7 215 42.3
arahy.Tifrunner.gnm1.ann1.W3QJXS Arachis hypogaea HOM05D004296 ORTHO05D005045 4.5e-30 136.0 228 38.2
ATR0680G148 Amborella trichopoda HOM05D004296 ORTHO05D005045 4.2e-28 129.4 268 35.8
Rhsim02G0230900 Rhododendron simsii HOM05D004296 ORTHO05D005045 7.1e-28 128.6 178 44.4
Sed0002821 Sechium edule HOM05D004296 ORTHO05D005045 1.6e-27 127.5 246 39.8
CAN.G1069.19 Capsicum annuum HOM05D004296 ORTHO05D005045 1.8e-26 124.0 110 56.4
Zm00001eb162950 Zea mays HOM05D004296 ORTHO05D005045 6.7e-26 122.1 331 28.7
Carub.0001s0729 Capsella rubella HOM05D004296 ORTHO05D005045 8.7e-26 121.7 282 36.2
Os01g0541600 Oryza sativa ssp. japonica HOM05D004296 ORTHO05D005045 1.1e-25 121.3 394 29.4
SEGI_21744 Sequoiadendron giganteum HOM05D004296 ORTHO05D005045 1.9e-25 120.6 271 33.6
FAN13G2230 Fragaria x ananassa HOM05D004296 ORTHO05D005045 3.7e-24 116.3 119 48.7
FAN18G3255 Fragaria x ananassa HOM05D004296 ORTHO05D005045 4.5e-22 109.4 88 56.8
Sabra01G0078900 Salix brachista HOM05D004296 ORTHO05D005045 2.9e-21 106.7 96 56.2
PSO210G3847 Papaver somniferum HOM05D004296 ORTHO05D005045 3.0e-18 96.7 260 33.5
PGSC0003DMG402005999 Solanum tuberosum HOM05D004296 ORTHO05D005045 2.1e-16 90.5 96 52.1
Mapoly0057s0058 Marchantia polymorpha HOM05D004296 ORTHO05D005045 2.8e-16 90.1 252 30.2
Nitab4.5_0003441g0080 Nicotiana tabacum HOM05D004296 ORTHO05D005045 2.0e-14 84.0 79 50.6
Oeu009158.1 Olea europaea HOM05D004296 ORTHO05D005045 2.0e-14 84.0 137 38.0
Os01g0531000 Oryza sativa ssp. japonica HOM05D004296 ORTHO05D005045 3.4e-14 83.2 70 54.3
Pp3c22_14200 Physcomitrium patens HOM05D004296 ORTHO05D005045 6.5e-13 79.0 124 40.3
ATR0680G137 Amborella trichopoda HOM05D004296 ORTHO05D005045 3.0e-10 70.1 62 50.0
arahy.Tifrunner.gnm1.ann1.BHE6V7 Arachis hypogaea HOM05D004296 ORTHO05D005045 3.9e-10 69.7 293 29.0
Cfa014102 Carpinus fangiana HOM05D004296 ORTHO05D005045 8.7e-10 68.6 54 59.3
Sabra01G0079000 Salix brachista HOM05D004296 ORTHO05D005045 7.4e-09 65.5 116 39.7
Mapoly0057s0052 Marchantia polymorpha HOM05D004296 ORTHO05D005045 2.2e-08 63.9 105 38.1
AagrBONN_evm.TU.Sc2ySwM_228.2126 Anthoceros agrestis HOM05D004296 ORTHO05D005045 6.3e-08 62.4 133 33.1
AagrBONN_evm.TU.Sc2ySwM_368.2814 Anthoceros agrestis HOM05D004296 ORTHO05D005045 1.5e-06 57.8 121 29.8
Cpa.g.sc39.98 Carica papaya HOM05D004296 ORTHO05D005045 1.5e-06 57.8 74 48.6


User provided reference genes

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