Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc01g0009340 Simmondsia chinensis HOM05D005270 ORTHO05D006239 7.6e-217 756.9 390 100.0
Dinv21601 Davidia involucrata HOM05D005270 ORTHO05D006239 1.8e-173 612.8 395 77.0
MD06G1067000 Malus domestica HOM05D005270 ORTHO05D006239 2.3e-173 612.5 391 79.5
PGR031G3926 Punica granatum HOM05D005270 ORTHO05D006239 4.0e-173 611.7 402 77.9
Atru.chr9.1379_Atru.chr9.1380 Acer truncatum HOM05D005270 ORTHO05D006239 5.7e-172 607.8 392 79.1
Hma1.2p1_1414F.1_g281890 Hydrangea macrophylla HOM05D005270 ORTHO05D006239 5.7e-172 607.8 398 77.4
QL12p013868 Quercus lobata HOM05D005270 ORTHO05D006239 1.3e-171 606.7 396 78.5
Gohir.A03G010000 Gossypium hirsutum HOM05D005270 ORTHO05D006239 2.8e-171 605.5 396 77.5
Prupe.5G075500 Prunus persica HOM05D005270 ORTHO05D006239 2.8e-171 605.5 390 78.5
RcHm_v2.0_Chr7g0202331 Rosa chinensis HOM05D005270 ORTHO05D006239 1.8e-170 602.8 390 77.9
Thecc.03G257000 Theobroma cacao HOM05D005270 ORTHO05D006239 1.8e-170 602.8 401 77.3
Gohir.D03G160700 Gossypium hirsutum HOM05D005270 ORTHO05D006239 2.4e-170 602.4 396 77.3
Eucgr.D02030 Eucalyptus grandis HOM05D005270 ORTHO05D006239 9.1e-170 600.5 408 75.7
FAN08G1405 Fragaria x ananassa HOM05D005270 ORTHO05D006239 9.1e-170 600.5 391 77.5
Lj2A211T58 Lonicera japonica HOM05D005270 ORTHO05D006239 1.2e-169 600.1 395 76.7
CSS0023019 Camellia sinensis var. sinensis HOM05D005270 ORTHO05D006239 1.6e-169 599.7 398 77.1
CSS0046114 Camellia sinensis var. sinensis HOM05D005270 ORTHO05D006239 1.6e-169 599.7 398 77.1
Duzib068G0557 Durio zibethinus HOM05D005270 ORTHO05D006239 2.0e-169 599.4 397 77.1
GSVIVG01004774001 Vitis vinifera HOM05D005270 ORTHO05D006239 2.0e-169 599.4 397 76.6
FvH4_5g00280 Fragaria vesca HOM05D005270 ORTHO05D006239 3.5e-169 598.6 391 77.2
Ciclev10020501m.g Citrus clementina HOM05D005270 ORTHO05D006239 1.3e-168 596.7 395 77.0
FAN04G3018 Fragaria x ananassa HOM05D005270 ORTHO05D006239 1.3e-168 596.7 396 76.8
FAN18G1040 Fragaria x ananassa HOM05D005270 ORTHO05D006239 1.7e-168 596.3 391 77.2
Sabra01G0092800 Salix brachista HOM05D005270 ORTHO05D006239 1.7e-168 596.3 396 77.8
Potri.001G120400 Populus trichocarpa HOM05D005270 ORTHO05D006239 3.8e-168 595.1 396 77.3
CiPaw.11G150400 Carya illinoinensis HOM05D005270 ORTHO05D006239 5.0e-168 594.7 398 75.9
GSVIVG01001274001 Vitis vinifera HOM05D005270 ORTHO05D006239 8.5e-168 594.0 397 76.3
Actinidia05188 Actinidia chinensis HOM05D005270 ORTHO05D006239 1.1e-167 593.6 397 76.6
FAN13G2928 Fragaria x ananassa HOM05D005270 ORTHO05D006239 1.1e-167 593.6 391 76.7
Gohir.A09G195500 Gossypium hirsutum HOM05D005270 ORTHO05D006239 1.1e-167 593.6 390 76.4
Gorai.006G212700 Gossypium raimondii HOM05D005270 ORTHO05D006239 2.5e-167 592.4 390 76.4
Solyc08g079070.2 Solanum lycopersicum HOM05D005270 ORTHO05D006239 5.5e-167 591.3 398 74.6
PGSC0003DMG400004791 Solanum tuberosum HOM05D005270 ORTHO05D006239 5.5e-167 591.3 398 75.1
Actinidia27450 Actinidia chinensis HOM05D005270 ORTHO05D006239 9.4e-167 590.5 397 75.6
CANSAT21G2027 Cannabis sativa HOM05D005270 ORTHO05D006239 9.4e-167 590.5 399 74.4
Cc08_g12920 Coffea canephora HOM05D005270 ORTHO05D006239 1.2e-166 590.1 387 75.5
Gohir.D09G190100 Gossypium hirsutum HOM05D005270 ORTHO05D006239 1.6e-166 589.7 390 76.2
Sopen08g027530 Solanum pennellii HOM05D005270 ORTHO05D006239 2.1e-166 589.3 398 74.6
TWI81G0718 Tripterygium wilfordii HOM05D005270 ORTHO05D006239 3.6e-166 588.6 397 75.8
ClCG01G003850 Citrullus lanatus HOM05D005270 ORTHO05D006239 6.1e-166 587.8 410 74.1
CAN.G1217.18 Capsicum annuum HOM05D000486 ORTHO05D000375 1.8e-165 586.3 396 74.2
Sed0019529 Sechium edule HOM05D005270 ORTHO05D006239 4.0e-165 585.1 401 75.3
arahy.Tifrunner.gnm1.ann1.9F7ELE Arachis hypogaea HOM05D005270 ORTHO05D006239 1.5e-164 583.2 404 74.3
Glyma.05G056400 Glycine max HOM05D005270 ORTHO05D006239 1.5e-164 583.2 400 74.8
Peaxi162Scf00002g00815 Petunia axillaris HOM05D005270 ORTHO05D006239 4.4e-164 581.6 397 74.1
Rhsim07G0104300 Rhododendron simsii HOM05D005270 ORTHO05D006239 5.7e-164 581.3 397 75.6
TAR629G2769 Trochodendron aralioides HOM05D005270 ORTHO05D006239 7.5e-164 580.9 358 81.3
Manes.01G076600 Manihot esculenta HOM05D005270 ORTHO05D006239 1.7e-163 579.7 399 74.7
MELO3C005559.2 Cucumis melo HOM05D005270 ORTHO05D006239 2.8e-163 578.9 392 75.0
Oeu038010.1 Olea europaea HOM05D005270 ORTHO05D006239 4.9e-163 578.2 398 73.1
arahy.Tifrunner.gnm1.ann1.VW53Z5 Arachis hypogaea HOM05D005270 ORTHO05D006239 6.3e-163 577.8 400 75.0
Ca_25339_v3 Cicer arietinum L. HOM05D005270 ORTHO05D006239 2.4e-162 575.9 393 74.3
Dinv39103 Davidia involucrata HOM05D000201 ORTHO05D001515 3.1e-162 575.5 386 75.9
Lalb_Chr05g0225581 Lupinus albus HOM05D005270 ORTHO05D006239 4.1e-162 575.1 400 74.2
CsaV3_5G003980 Cucumis sativus L. HOM05D005270 ORTHO05D006239 7.0e-162 574.3 392 74.5
MSTRG.25537 Avicennia marina HOM05D005270 ORTHO05D006239 1.2e-161 573.5 397 72.5
SGA_v2.0_scaffold144G35994 Striga asiatica HOM05D005270 ORTHO05D003965 1.0e-160 570.5 396 73.2
Psat4g070360 Pisum sativum HOM05D005270 ORTHO05D006239 5.0e-160 568.2 399 73.4
Migut.E01048 Erythranthe guttata HOM05D005270 ORTHO05D006239 1.9e-159 566.2 395 72.4
SalBow1G0839 Salvia bowleyana HOM05D005270 ORTHO05D006239 2.5e-159 565.8 387 74.4
PSO017G6911 Papaver somniferum HOM05D005270 ORTHO05D006239 5.5e-159 564.7 386 74.6
Lj4g0020394 Lotus japonicus HOM05D005270 ORTHO05D006239 1.2e-158 563.5 396 73.2
BraA06t24120Z Brassica rapa HOM05D005270 ORTHO05D006239 2.1e-158 562.8 413 70.9
Carub.0001s1190 Capsella rubella HOM05D005270 ORTHO05D006239 3.6e-158 562.0 409 70.7
unitig_0.g1234 Utricularia gibba HOM05D005270 ORTHO05D006239 3.6e-158 562.0 399 71.9
CARHR012530 Cardamine hirsuta HOM05D005270 ORTHO05D006239 4.7e-158 561.6 409 71.1
MBI04_g37584_MAGBIO Magnolia biondii HOM05D005270 ORTHO05D006239 4.7e-158 561.6 397 73.0
Medtr4g101620 Medicago truncatula HOM05D005270 ORTHO05D006239 4.7e-158 561.6 359 77.7
PSO170G6680 Papaver somniferum HOM05D005270 ORTHO05D006239 4.7e-158 561.6 394 73.4
AL1G23510 Arabidopsis lyrata HOM05D005270 ORTHO05D006239 8.0e-158 560.8 409 70.4
A06p09330 Brassica napus HOM05D005270 ORTHO05D006239 1.0e-157 560.5 410 70.7
Aqoxy7G00723 Aquilegia oxysepala HOM05D005270 ORTHO05D006239 1.8e-157 559.7 366 76.0
Glyma.17G138600 Glycine max HOM05D005270 ORTHO05D006239 3.0e-157 558.9 398 71.9
Thhalv10007790m.g Eutrema salsugineum HOM05D005270 ORTHO05D006239 4.0e-157 558.5 410 70.5
HPP92_022434 Vanilla planifolia HOM05D005270 ORTHO05D006239 4.0e-157 558.5 396 72.2
TPR.G37612 Trifolium pratense HOM05D005270 ORTHO05D006239 1.5e-156 556.6 360 77.5
vmacro14106 Vaccinium macrocarpon HOM05D005270 ORTHO05D006239 2.6e-156 555.8 419 69.0
C05p11010 Brassica napus HOM05D005270 ORTHO05D006239 3.4e-156 555.4 411 70.3
Sp1g10840 Schrenkiella parvula HOM05D005270 ORTHO05D006239 5.7e-156 554.7 406 70.4
BolC5t29844H Brassica oleracea HOM05D005270 ORTHO05D006239 9.8e-156 553.9 411 70.1
THA.LOC104809459 Tarenaya hassleriana HOM05D005270 ORTHO05D006239 2.8e-155 552.4 405 70.9
EL10Ac5g13010 Beta vulgaris HOM05D005270 ORTHO05D006239 3.7e-155 552.0 401 72.6
Aa31LG1G2400 Aethionema arabicum HOM05D005270 ORTHO05D006239 4.9e-155 551.6 408 69.6
AUR62007475 Chenopodium quinoa HOM05D005270 ORTHO05D006239 1.4e-154 550.1 371 77.4
ATR1152G004 Amborella trichopoda HOM05D005270 ORTHO05D006239 2.4e-154 549.3 396 71.7
Lsat_1_v5_gn_6_90321 Lactuca sativa HOM05D005270 ORTHO05D006239 5.4e-154 548.1 397 71.0
HanXRQChr03g0087851 Helianthus annuus HOM05D005270 ORTHO05D006239 1.6e-153 546.6 395 70.9
Nitab4.5_0009175g0010 Nicotiana tabacum HOM05D005270 ORTHO05D006239 2.0e-153 546.2 408 70.3
AT1G12230 Arabidopsis thaliana HOM05D005270 ORTHO05D006239 2.7e-153 545.8 431 66.4
Cpa.g.sc29.127 Carica papaya HOM05D005270 ORTHO05D006239 5.0e-152 541.6 504 58.9
ECA240G0014 Erigeron canadensis HOM05D000201 ORTHO05D006239 2.3e-149 532.7 370 70.8
CDE12G0422 Ceratophyllum demersum HOM05D005270 ORTHO05D006239 2.6e-148 529.3 394 68.0
Nitab4.5_0000993g0070 Nicotiana tabacum HOM05D005270 ORTHO05D006239 2.6e-148 529.3 398 69.1
Duzib205G1833 Durio zibethinus HOM05D005270 ORTHO05D006239 1.0e-144 517.3 400 69.2
Zm00001eb172680 Zea mays HOM05D005270 ORTHO05D006239 1.1e-143 513.8 396 65.9
VMungo0251G3554 Vigna mungo HOM05D005270 ORTHO05D006239 5.6e-143 511.5 306 81.7
Phvul.003G218000 Phaseolus vulgaris HOM05D005270 ORTHO05D006239 1.8e-141 506.5 393 67.7
DCAR_006814 Daucus carota HOM05D005270 ORTHO05D006239 4.4e-140 501.9 388 67.5
COL.COLO4_37215 Corchorus olitorius HOM05D005270 ORTHO05D006239 6.0e-137 491.5 283 84.1
AagrBONN_evm.TU.Sc2ySwM_369.586 Anthoceros agrestis HOM05D005270 ORTHO05D006239 7.8e-137 491.1 336 71.4
Pp3c15_6350 Physcomitrium patens HOM05D005270 ORTHO05D006239 2.0e-132 476.5 348 66.7
BcaC05g25195 Brassica carinata HOM05D005270 ORTHO05D006239 7.1e-130 468.0 382 64.9
SalBow1G5553 Salvia bowleyana HOM05D005270 ORTHO05D006239 3.9e-120 435.6 443 55.1
CBR_g37411 Chara braunii HOM05D005270 ORTHO05D006239 4.0e-109 399.1 382 53.4
Psat5g235160 Pisum sativum HOM05D005270 ORTHO05D006239 1.3e-78 297.7 312 53.8
Sed0011689 Sechium edule HOM05D005270 ORTHO05D006239 1.4e-77 294.3 247 64.8
Psat5g232960 Pisum sativum HOM05D005270 ORTHO05D006239 2.6e-76 290.0 258 60.1
Mapoly0029s0033 Marchantia polymorpha HOM05D005270 ORTHO05D006239 1.0e-72 278.1 208 65.9
Gorai.N027100 Gossypium raimondii HOM05D005270 ORTHO05D006239 3.0e-72 276.6 160 81.9
CDE04G1696 Ceratophyllum demersum HOM05D005270 ORTHO05D006239 7.2e-66 255.4 161 75.8
Mapoly0029s0029 Marchantia polymorpha HOM05D005270 ORTHO05D006239 7.2e-66 255.4 203 61.1
Os08g0154300 Oryza sativa ssp. japonica HOM05D005270 ORTHO05D006239 2.1e-65 253.8 227 60.4
Haze_07851 Corylus avellana HOM05D005270 ORTHO05D006239 2.2e-59 233.8 260 52.7
DCAR_004923 Daucus carota HOM05D005270 ORTHO05D006239 3.4e-55 219.9 234 52.6
Atru.chr9.1382 Acer truncatum HOM05D005270 ORTHO05D006239 5.0e-51 206.1 165 68.5
CDE04G2727 Ceratophyllum demersum HOM05D005270 ORTHO05D006239 4.7e-49 199.5 205 54.6
AUR62039933 Chenopodium quinoa HOM05D005270 ORTHO05D006239 9.8e-47 191.8 110 84.5
Atru.chr9.1383 Acer truncatum HOM05D005270 ORTHO05D006239 3.1e-45 186.8 110 82.7
SEGI_36758 Sequoiadendron giganteum HOM05D005270 ORTHO05D006239 6.6e-43 179.1 170 59.4
Cre01.g032650 Chlamydomonas reinhardtii HOM05D005270 ORTHO05D006239 5.2e-40 169.5 369 33.6
SEGI_05849 Sequoiadendron giganteum HOM05D005270 ORTHO05D006239 5.2e-40 169.5 100 79.0
Cre14.g630847 Chlamydomonas reinhardtii HOM05D005270 ORTHO05D006239 7.5e-39 165.6 372 33.9
SEGI_03700 Sequoiadendron giganteum HOM05D005270 ORTHO05D006239 2.4e-37 160.6 110 69.1
PRCOL_00004111 Prasinoderma coloniale HOM05D005270 ORTHO05D006239 7.8e-36 155.6 287 33.1
Gorai.003G169200 Gossypium raimondii HOM05D005270 ORTHO05D006239 6.6e-35 152.5 141 61.0
MCO13G140 Micromonas commoda HOM05D005270 ORTHO05D006239 8.9e-32 142.1 267 32.6
FAN11G3467 Fragaria x ananassa HOM05D005270 ORTHO05D006239 7.5e-31 139.0 161 50.9
FAN28G1011 Fragaria x ananassa HOM05D005270 ORTHO05D006239 9.8e-31 138.7 161 50.9
PRCOL_00004269 Prasinoderma coloniale HOM05D005270 ORTHO05D006239 4.4e-23 113.2 257 30.7
RcHm_v2.0_Chr6g0270571 Rosa chinensis HOM05D005270 ORTHO05D006239 2.4e-21 107.5 78 70.5
Ca_29061_v3 Cicer arietinum L. HOM05D001546 ORTHO05D002908 3.0e-19 100.5 210 31.0
RcHm_v2.0_Chr6g0254981 Rosa chinensis HOM05D005270 ORTHO05D006239 8.6e-19 99.0 58 81.0
BcaC07g38600 Brassica carinata HOM05D000238 ORTHO05D037998 1.5e-18 98.2 93 62.4
CAN.G1488.1 Capsicum annuum HOM05D005270 ORTHO05D006239 2.5e-18 97.4 130 41.5
FAN04G2435 Fragaria x ananassa HOM05D005270 ORTHO05D006239 4.3e-18 96.7 60 80.0
CSS0018551 Camellia sinensis var. sinensis HOM05D000691 ORTHO05D000378 1.2e-17 95.1 62 71.0
MBI03_g13472_MAGBIO Magnolia biondii HOM05D005270 ORTHO05D006239 2.8e-17 94.0 69 65.2
CAN.G605.8 Capsicum annuum HOM05D005270 ORTHO05D006239 3.6e-17 93.6 51 80.4
GSVIVG01028518001 Vitis vinifera HOM05D005270 ORTHO05D006239 2.3e-16 90.9 49 81.6
MBI14_g06401_MAGBIO Magnolia biondii HOM05D005270 ORTHO05D006239 2.6e-15 87.4 51 84.3
BcaC07g41719 Brassica carinata HOM05D005270 ORTHO05D039702 3.4e-15 87.0 80 65.0
BolC8t52299H Brassica oleracea HOM05D005270 ORTHO05D039702 3.4e-15 87.0 80 65.0
MBI15_g47610_MAGBIO Magnolia biondii HOM05D001260 ORTHO05D004134 3.4e-15 87.0 49 87.8
FAN26G1714 Fragaria x ananassa HOM05D004635 ORTHO05D005899 3.8e-14 83.6 53 77.4
FAN14G3934 Fragaria x ananassa HOM05D000617 ORTHO05D000478 4.9e-14 83.2 55 74.5
FAN23G0587 Fragaria x ananassa HOM05D016072 ORTHO05D006239 1.1e-13 82.0 52 76.9
SalBow1G3426 Salvia bowleyana HOM05D005270 ORTHO05D006239 3.2e-13 80.5 51 66.7
FAN26G2512 Fragaria x ananassa HOM05D005270 ORTHO05D006239 1.6e-12 78.2 52 75.0
CAN.G1143.36 Capsicum annuum HOM05D001836 ORTHO05D001519 2.1e-12 77.8 85 49.4
PRCOL_00005862 Prasinoderma coloniale HOM05D005270 ORTHO05D333221 2.1e-12 77.8 194 28.4
FAN10G1808 Fragaria x ananassa HOM05D016072 ORTHO05D006239 5.1e-11 73.2 48 75.0
FAN23G1777 Fragaria x ananassa HOM05D016072 ORTHO05D006239 5.1e-11 73.2 48 75.0
MBI16_g06311_MAGBIO Magnolia biondii HOM05D001260 ORTHO05D004134 3.3e-10 70.5 41 85.4
MBI18_g46779_MAGBIO Magnolia biondii HOM05D005270 ORTHO05D004199 5.6e-10 69.7 39 89.7


User provided reference genes

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