Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc01g0009170 Simmondsia chinensis HOM05D004659 ORTHO05D005547 4.2e-119 431.4 224 100.0
Sc26g0002120 Simmondsia chinensis HOM05D004659 ORTHO05D005547 4.4e-76 288.5 157 95.5
Sc01g0005590 Simmondsia chinensis HOM05D004659 ORTHO05D005547 8.1e-70 267.7 158 87.3
Hund23274 Selenicereus undatus HOM05D004659 ORTHO05D005547 2.8e-54 216.1 158 71.5
EL10Ac6g15306 Beta vulgaris HOM05D004659 ORTHO05D005547 9.3e-50 201.1 161 65.8
Ah.09g233850 Amaranthus hybridus HOM05D004659 ORTHO05D005547 1.6e-46 190.3 158 62.0
AUR62043493 Chenopodium quinoa HOM05D004659 ORTHO05D005547 5.3e-37 158.7 122 66.4
AUR62003563 Chenopodium quinoa HOM05D004659 ORTHO05D005547 4.0e-29 132.5 105 66.7
AUR62017877 Chenopodium quinoa HOM05D004659 ORTHO05D005547 4.0e-29 132.5 107 66.4
HPP92_012064 Vanilla planifolia HOM05D004659 ORTHO05D005547 2.5e-23 113.2 134 43.3
CiPaw.02G177400 Carya illinoinensis HOM05D004659 ORTHO05D005547 2.1e-22 110.2 187 40.1
Cc09_g02380 Coffea canephora HOM05D004659 ORTHO05D005547 2.8e-22 109.8 125 49.6
ClCG02G013790 Citrullus lanatus HOM05D004659 ORTHO05D005547 6.3e-22 108.6 126 50.0
CDE02G4355 Ceratophyllum demersum HOM05D002697 ORTHO05D005547 8.2e-22 108.2 126 50.0
CDE09G1094 Ceratophyllum demersum HOM05D004659 ORTHO05D005547 1.1e-21 107.8 125 50.4
unitig_46.g18586 Utricularia gibba HOM05D004659 ORTHO05D005547 1.1e-21 107.8 126 49.2
CsaV3_5G006380 Cucumis sativus L. HOM05D004659 ORTHO05D005547 1.4e-21 107.5 126 49.2
Hma1.2p1_2685F.1_g326920 Hydrangea macrophylla HOM05D004659 ORTHO05D005547 1.4e-21 107.5 135 47.4
MELO3C011720.2 Cucumis melo HOM05D004659 ORTHO05D005547 2.4e-21 106.7 126 48.4
Haze_22491 Corylus avellana HOM05D004659 ORTHO05D005547 3.1e-21 106.3 181 42.0
TAR369G1054 Trochodendron aralioides HOM05D004659 ORTHO05D005547 3.1e-21 106.3 125 49.6
Sc09g0006840 Simmondsia chinensis HOM05D004659 ORTHO05D005547 5.3e-21 105.5 130 45.4
Zm00001eb355270 Zea mays HOM05D004659 ORTHO05D005547 5.3e-21 105.5 160 43.1
CSS0038055 Camellia sinensis var. sinensis HOM05D004659 ORTHO05D005547 6.9e-21 105.1 130 45.4
CAN.G186.30 Capsicum annuum HOM05D004659 ORTHO05D005547 9.0e-21 104.8 130 46.2
MSTRG.9197 Avicennia marina HOM05D004659 ORTHO05D005547 1.2e-20 104.4 188 39.4
Gorai.009G315800 Gossypium raimondii HOM05D004659 ORTHO05D005547 1.2e-20 104.4 204 40.2
Peaxi162Scf00195g00083 Petunia axillaris HOM05D004659 ORTHO05D005547 1.2e-20 104.4 130 46.2
Solyc04g009540.1 Solanum lycopersicum HOM05D004659 ORTHO05D005547 1.2e-20 104.4 130 45.4
Sopen04g004700 Solanum pennellii HOM05D004659 ORTHO05D005547 1.2e-20 104.4 130 45.4
PGSC0003DMG400032570 Solanum tuberosum HOM05D004659 ORTHO05D005547 1.2e-20 104.4 130 45.4
Lalb_Chr07g0179691 Lupinus albus HOM05D004659 ORTHO05D005547 1.5e-20 104.0 125 48.0
Manes.07G069200 Manihot esculenta HOM05D004659 ORTHO05D005547 1.5e-20 104.0 203 40.4
Aa31sc127G30 Aethionema arabicum HOM05D004659 ORTHO05D005547 2.0e-20 103.6 130 45.4
Gohir.A05G298900 Gossypium hirsutum HOM05D004659 ORTHO05D005547 2.0e-20 103.6 204 40.2
Nn2g10610 Nelumbo nucifera HOM05D004659 ORTHO05D005547 2.6e-20 103.2 197 40.1
Phvul.004G002100 Phaseolus vulgaris HOM05D004659 ORTHO05D005547 2.6e-20 103.2 135 44.4
Glyma.17G075900 Glycine max HOM05D004659 ORTHO05D005547 3.4e-20 102.8 125 48.0
Gohir.D05G298600 Gossypium hirsutum HOM05D004659 ORTHO05D005547 3.4e-20 102.8 203 40.9
MBI05_g34749_MAGBIO Magnolia biondii HOM05D004659 ORTHO05D005547 3.4e-20 102.8 127 46.5
PSO384G3929 Papaver somniferum HOM05D004659 ORTHO05D005547 3.4e-20 102.8 201 37.8
QL08p057255 Quercus lobata HOM05D004659 ORTHO05D005547 3.4e-20 102.8 194 38.7
Actinidia03015 Actinidia chinensis HOM05D004659 ORTHO05D005547 4.5e-20 102.4 194 37.6
AagrBONN_evm.TU.Sc2ySwM_228.2422 Anthoceros agrestis HOM05D004659 ORTHO05D005547 4.5e-20 102.4 124 48.4
MD05G1196100 Malus domestica HOM05D004659 ORTHO05D005547 4.5e-20 102.4 125 48.8
PSO339G6228 Papaver somniferum HOM05D004659 ORTHO05D005547 4.5e-20 102.4 201 37.8
THA.LOC104827313 Tarenaya hassleriana HOM05D004659 ORTHO05D005547 4.5e-20 102.4 175 41.1
Cfa013817 Carpinus fangiana HOM05D004659 ORTHO05D005547 5.9e-20 102.1 181 40.3
Sed0009994 Sechium edule HOM05D004659 ORTHO05D005547 5.9e-20 102.1 125 47.2
Aqoxy4G03156 Aquilegia oxysepala HOM05D004659 ORTHO05D005547 7.6e-20 101.7 197 38.6
DCAR_019149 Daucus carota HOM05D004659 ORTHO05D005547 7.6e-20 101.7 202 38.6
Lj1P926T21 Lonicera japonica HOM05D004659 ORTHO05D005547 7.6e-20 101.7 130 45.4
Atru.chr12.612 Acer truncatum HOM05D004659 ORTHO05D005547 1.0e-19 101.3 210 37.6
Lsat_1_v5_gn_9_66541 Lactuca sativa HOM05D004659 ORTHO05D005547 1.0e-19 101.3 126 46.8
Lj4g0017760 Lotus japonicus HOM05D004659 ORTHO05D005547 1.0e-19 101.3 127 46.5
Medtr4g131540 Medicago truncatula HOM05D004659 ORTHO05D005547 1.0e-19 101.3 130 45.4
VMungo0464G0639 Vigna mungo HOM05D004659 ORTHO05D005547 1.3e-19 100.9 130 43.8
Nn8g38769 Nelumbo nucifera HOM05D004659 ORTHO05D005547 1.7e-19 100.5 200 39.0
Nitab4.5_0004104g0080 Nicotiana tabacum HOM05D004659 ORTHO05D005547 1.7e-19 100.5 208 36.1
Oeu017240.1 Olea europaea HOM05D004659 ORTHO05D005547 1.7e-19 100.5 213 36.6
Potri.010G215900 Populus trichocarpa HOM05D004659 ORTHO05D005547 1.7e-19 100.5 135 45.9
Sp6g30510 Schrenkiella parvula HOM05D004659 ORTHO05D005547 1.7e-19 100.5 177 39.0
THA.LOC104799364 Tarenaya hassleriana HOM05D004659 ORTHO05D005547 1.7e-19 100.5 196 37.2
arahy.Tifrunner.gnm1.ann1.23T474 Arachis hypogaea HOM05D004659 ORTHO05D005547 2.2e-19 100.1 202 37.6
Os05g0121500 Oryza sativa ssp. japonica HOM05D004659 ORTHO05D005547 2.2e-19 100.1 131 45.0
Sabra10G0166900 Salix brachista HOM05D004659 ORTHO05D005547 2.2e-19 100.1 135 45.9
Carub.0006s1167 Capsella rubella HOM05D004659 ORTHO05D005547 2.9e-19 99.8 134 44.0
MD10G1183400 Malus domestica HOM05D004659 ORTHO05D005547 2.9e-19 99.8 218 37.6
ECA232G1287 Erigeron canadensis HOM05D004659 ORTHO05D005547 3.8e-19 99.4 195 37.9
Potri.008G045800 Populus trichocarpa HOM05D004659 ORTHO05D005547 3.8e-19 99.4 135 45.2
Ah.10g033100 Amaranthus hybridus HOM05D004659 ORTHO05D005547 5.0e-19 99.0 126 45.2
C09p63590 Brassica napus HOM05D004659 ORTHO05D005547 5.0e-19 99.0 127 44.9
Prupe.8G222500 Prunus persica HOM05D004659 ORTHO05D005547 6.5e-19 98.6 124 47.6
Psat4g007600 Pisum sativum HOM05D004659 ORTHO05D005547 8.5e-19 98.2 203 36.5
SalBow4G3080 Salvia bowleyana HOM05D004659 ORTHO05D005547 8.5e-19 98.2 172 38.4
ATR0594G228 Amborella trichopoda HOM05D004659 ORTHO05D005547 1.1e-18 97.8 125 44.8
Ciclev10032705m.g Citrus clementina HOM05D004659 ORTHO05D005547 1.4e-18 97.4 187 38.5
Nitab4.5_0000691g0220 Nicotiana tabacum HOM05D004659 ORTHO05D005547 1.4e-18 97.4 207 35.7
PGR031G1734 Punica granatum HOM05D004659 ORTHO05D005547 1.4e-18 97.4 211 39.8
Thecc.10G065300 Theobroma cacao HOM05D004659 ORTHO05D005547 1.4e-18 97.4 197 39.6
TWI38G0010 Tripterygium wilfordii HOM05D004659 ORTHO05D005547 1.4e-18 97.4 126 44.4
Ca_21106_v3 Cicer arietinum L. HOM05D004659 ORTHO05D005547 1.9e-18 97.1 197 36.5
C02p06210 Brassica napus HOM05D004659 ORTHO05D005547 2.5e-18 96.7 181 37.0
AL3G24020 Arabidopsis lyrata HOM05D004659 ORTHO05D005547 3.2e-18 96.3 131 43.5
AL6G24130 Arabidopsis lyrata HOM05D004659 ORTHO05D005547 3.2e-18 96.3 204 36.3
BcaNung01889 Brassica carinata HOM05D004659 ORTHO05D005547 3.2e-18 96.3 181 37.6
BraA02t05172Z Brassica rapa HOM05D004659 ORTHO05D005547 3.2e-18 96.3 181 37.0
CARHR199930 Cardamine hirsuta HOM05D004659 ORTHO05D005547 3.2e-18 96.3 200 36.5
Mapoly0115s0051 Marchantia polymorpha HOM05D004659 ORTHO05D005547 3.2e-18 96.3 127 44.1
RcHm_v2.0_Chr6g0287931 Rosa chinensis HOM05D004659 ORTHO05D005547 3.2e-18 96.3 195 37.9
Zm00001eb397230 Zea mays HOM05D004659 ORTHO05D005547 3.2e-18 96.3 127 46.5
AT3G12370 Arabidopsis thaliana HOM05D004659 ORTHO05D005547 4.2e-18 95.9 131 43.5
AT5G13510 Arabidopsis thaliana HOM05D004659 ORTHO05D005547 4.2e-18 95.9 204 36.3
CANSAT35G1484 Cannabis sativa HOM05D004659 ORTHO05D005547 4.2e-18 95.9 201 38.3
SGA_v2.0_scaffold62G21448 Striga asiatica HOM05D004659 ORTHO05D005547 4.2e-18 95.9 228 33.8
Zm00001eb013020 Zea mays HOM05D004659 ORTHO05D005547 4.2e-18 95.9 127 46.5
Pp3c2_35950 Physcomitrium patens HOM05D004659 ORTHO05D005547 5.5e-18 95.5 126 43.7
BolC2t06562H Brassica oleracea HOM05D004659 ORTHO05D005547 7.2e-18 95.1 176 37.5
HanXRQChr09g0247171 Helianthus annuus HOM05D004659 ORTHO05D005547 7.2e-18 95.1 200 36.0
Sabra08G0032100 Salix brachista HOM05D004659 ORTHO05D005547 7.2e-18 95.1 205 39.5
SMO239G0117 Selaginella moellendorffii HOM05D004659 ORTHO05D005547 7.2e-18 95.1 123 44.7
Cpa.g.sc1.279 Carica papaya HOM05D004659 ORTHO05D005547 9.3e-18 94.7 188 37.2
AUR62027894 Chenopodium quinoa HOM05D004659 ORTHO05D005547 1.2e-17 94.4 206 35.0
Os03g0284400 Oryza sativa ssp. japonica HOM05D004659 ORTHO05D005547 1.2e-17 94.4 127 45.7
Sp3g10560 Schrenkiella parvula HOM05D004659 ORTHO05D005547 1.2e-17 94.4 142 40.1
BcaNung01147 Brassica carinata HOM05D004659 ORTHO05D005547 1.6e-17 94.0 181 37.0
BraA05t22500Z Brassica rapa HOM05D004659 ORTHO05D005547 1.6e-17 94.0 142 40.1
Carub.0003s1173 Capsella rubella HOM05D004659 ORTHO05D005547 1.6e-17 94.0 147 41.5
CARHR086910 Cardamine hirsuta HOM05D004659 ORTHO05D005547 1.6e-17 94.0 142 39.4
BcaC04g19111 Brassica carinata HOM05D004659 ORTHO05D005547 2.1e-17 93.6 199 37.7
BcaC05g29267 Brassica carinata HOM05D004659 ORTHO05D005547 2.1e-17 93.6 142 40.1
C05p55460 Brassica napus HOM05D004659 ORTHO05D005547 2.1e-17 93.6 142 40.1
BolC5t34212H Brassica oleracea HOM05D004659 ORTHO05D005547 2.1e-17 93.6 142 40.1
BolC9t59202H Brassica oleracea HOM05D004659 ORTHO05D005547 2.1e-17 93.6 199 37.7
AUR62036014 Chenopodium quinoa HOM05D004659 ORTHO05D005547 2.1e-17 93.6 208 35.1
COL.COLO4_23776 Corchorus olitorius HOM05D004659 ORTHO05D005547 2.1e-17 93.6 194 39.2
A05p37030 Brassica napus HOM05D004659 ORTHO05D005547 2.7e-17 93.2 142 40.1
Thhalv10022434m.g Eutrema salsugineum HOM05D004659 ORTHO05D005547 2.7e-17 93.2 142 40.1
FvH4_2g21340 Fragaria vesca HOM05D004659 ORTHO05D005547 2.7e-17 93.2 194 38.7
TPR.G37110 Trifolium pratense HOM05D004659 ORTHO05D005547 2.7e-17 93.2 129 42.6
vmacro04881 Vaccinium macrocarpon HOM05D004659 ORTHO05D005547 3.6e-17 92.8 205 36.6
A10p24760 Brassica napus HOM05D004659 ORTHO05D005547 4.6e-17 92.4 197 37.6
BraA10t44539Z Brassica rapa HOM05D004659 ORTHO05D005547 4.6e-17 92.4 197 37.6
FAN24G1009 Fragaria x ananassa HOM05D004659 ORTHO05D005547 7.9e-17 91.7 176 39.2
C01p52890 Brassica napus HOM05D004659 ORTHO05D005547 1.3e-16 90.9 142 38.7
Thhalv10014625m.g Eutrema salsugineum HOM05D004659 ORTHO05D005547 1.3e-16 90.9 197 36.0
Lalb_Chr13g0301081 Lupinus albus HOM05D004659 ORTHO05D005547 1.3e-16 90.9 125 43.2
Pp3c1_1330 Physcomitrium patens HOM05D004659 ORTHO05D005547 1.3e-16 90.9 126 42.9
Rhsim03G0135900 Rhododendron simsii HOM05D004659 ORTHO05D005547 1.8e-16 90.5 201 35.3
BolC1t05226H Brassica oleracea HOM05D004659 ORTHO05D005547 3.9e-16 89.4 142 38.7
Duzib106G0066 Durio zibethinus HOM05D004659 ORTHO05D005547 5.1e-16 89.0 196 37.2
Aa31sc153G80 Aethionema arabicum HOM05D004659 ORTHO05D005547 1.5e-15 87.4 144 37.5
BcaC09g48234 Brassica carinata HOM05D004659 ORTHO05D005547 1.5e-15 87.4 131 38.9
SMO001G0016 Selaginella moellendorffii HOM05D004659 ORTHO05D005547 9.7e-15 84.7 109 45.0
Dinv31375 Davidia involucrata HOM05D004659 ORTHO05D005547 4.8e-14 82.4 93 51.6
SMO306G0014 Selaginella moellendorffii HOM05D004659 ORTHO05D005547 9.0e-13 78.2 112 44.6
Zm00001eb342870 Zea mays HOM05D004659 ORTHO05D005547 7.9e-09 65.1 68 48.5
CBR_g32465 Chara braunii HOM05D004659 ORTHO05D005547 8.8e-08 61.6 126 34.1
Glyma.13G155300 Glycine max HOM05D004659 ORTHO05D005547 8.8e-08 61.6 81 46.9
A02p02000 Brassica napus HOM05D004659 ORTHO05D005547 7.4e-07 58.5 81 42.0


User provided reference genes

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