Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc01g0008800 Simmondsia chinensis HOM05D005805 ORTHO05D007226 2.2e-212 742.3 443 100.0
EL10Ac5g12722 Beta vulgaris HOM05D005805 ORTHO05D007226 3.5e-93 346.3 463 55.9
Hund28361 Selenicereus undatus HOM05D005805 ORTHO05D007226 5.3e-89 332.4 495 52.3
Hund28365 Selenicereus undatus HOM05D005805 ORTHO05D007226 5.3e-89 332.4 495 52.3
AUR62017300 Chenopodium quinoa HOM05D005805 ORTHO05D007226 9.0e-89 331.6 456 54.6
Eucgr.D01927 Eucalyptus grandis HOM05D005805 ORTHO05D007226 3.4e-88 329.7 450 48.4
CSS0012055 Camellia sinensis var. sinensis HOM05D005805 ORTHO05D007226 4.5e-88 329.3 456 46.5
Migut.A00918 Erythranthe guttata HOM05D005805 ORTHO05D007226 9.9e-88 328.2 458 45.4
CSS0001301 Camellia sinensis var. sinensis HOM05D005805 ORTHO05D007226 2.9e-87 326.6 454 45.6
CiPaw.11G141700 Carya illinoinensis HOM05D005805 ORTHO05D007226 3.8e-87 326.2 472 52.5
AUR62010661 Chenopodium quinoa HOM05D005805 ORTHO05D007226 2.4e-86 323.6 456 51.5
Peaxi162Scf00620g00920 Petunia axillaris HOM05D005805 ORTHO05D007226 2.7e-85 320.1 423 48.2
Actinidia14511 Actinidia chinensis HOM05D005805 ORTHO05D007226 7.9e-85 318.5 440 45.7
Dinv39015 Davidia involucrata HOM05D005805 ORTHO05D007226 7.9e-85 318.5 407 46.4
TAR375G0540 Trochodendron aralioides HOM05D005805 ORTHO05D007226 7.9e-85 318.5 472 44.5
Actinidia02051 Actinidia chinensis HOM05D005805 ORTHO05D007226 3.0e-84 316.6 436 45.6
THA.LOC104814292 Tarenaya hassleriana HOM05D005805 ORTHO05D007226 3.9e-84 316.2 445 55.1
Nitab4.5_0009882g0030 Nicotiana tabacum HOM05D005805 ORTHO05D007226 5.1e-84 315.8 449 45.7
PGR031G2899 Punica granatum HOM05D005805 ORTHO05D007226 6.7e-84 315.5 439 54.9
Sopen08g028610 Solanum pennellii HOM05D005805 ORTHO05D007226 1.9e-83 313.9 446 46.6
VMungo1215G3124 Vigna mungo HOM05D005805 ORTHO05D007226 1.9e-83 313.9 456 44.5
Ciclev10020090m.g Citrus clementina HOM05D005805 ORTHO05D007226 4.3e-83 312.8 458 55.9
Cfa012095 Carpinus fangiana HOM05D005805 ORTHO05D007226 7.4e-83 312.0 482 53.9
Ca_06662_v3 Cicer arietinum L. HOM05D005805 ORTHO05D007226 7.4e-83 312.0 456 43.9
Sed0020250 Sechium edule HOM05D005805 ORTHO05D007226 1.3e-82 311.2 448 45.5
ECA233G3280 Erigeron canadensis HOM05D005805 ORTHO05D007226 2.1e-82 310.5 432 51.9
vmacro00648 Vaccinium macrocarpon HOM05D005805 ORTHO05D007226 2.8e-82 310.1 430 45.6
Ah.12g057730 Amaranthus hybridus HOM05D005805 ORTHO05D007226 3.7e-82 309.7 522 41.0
HanXRQChr02g0048701 Helianthus annuus HOM05D005805 ORTHO05D007226 4.8e-82 309.3 433 47.1
TAR629G3121 Trochodendron aralioides HOM05D005805 ORTHO05D007226 4.8e-82 309.3 469 43.9
Glyma.11G026600 Glycine max HOM05D005805 ORTHO05D007226 1.8e-81 307.4 465 43.7
Phvul.002G153800 Phaseolus vulgaris HOM05D005805 ORTHO05D007226 6.9e-81 305.4 403 46.4
QL12p017075 Quercus lobata HOM05D005805 ORTHO05D007226 6.9e-81 305.4 461 52.7
TPR.G6662 Trifolium pratense HOM05D005805 ORTHO05D007226 9.0e-81 305.1 461 53.8
CAN.G981.40 Capsicum annuum HOM05D005805 ORTHO05D007226 1.2e-80 304.7 458 44.5
PGSC0003DMG400022755 Solanum tuberosum HOM05D005805 ORTHO05D007226 2.0e-80 303.9 400 48.2
Thecc.03G270600 Theobroma cacao HOM05D005805 ORTHO05D007226 2.6e-80 303.5 432 54.9
Nitab4.5_0001714g0200 Nicotiana tabacum HOM05D005805 ORTHO05D007226 3.4e-80 303.1 418 46.7
Lalb_Chr16g0379971 Lupinus albus HOM05D005805 ORTHO05D007226 4.5e-80 302.8 450 41.8
Glyma.01G215800 Glycine max HOM05D005805 ORTHO05D007226 1.0e-79 301.6 465 43.0
Psat2g181520 Pisum sativum HOM05D005805 ORTHO05D007226 1.3e-79 301.2 457 51.9
GSVIVG01019866001 Vitis vinifera HOM05D005805 ORTHO05D007226 2.2e-79 300.4 435 43.9
Hma1.2p1_0371F.1_g138200 Hydrangea macrophylla HOM05D005805 ORTHO05D007226 6.5e-79 298.9 426 46.0
CiPaw.12G099000 Carya illinoinensis HOM05D005805 ORTHO05D007226 1.1e-78 298.1 465 54.6
MELO3C005626.2 Cucumis melo HOM05D005805 ORTHO05D007226 1.9e-78 297.4 427 46.4
Lsat_1_v5_gn_6_12941 Lactuca sativa HOM05D005805 ORTHO05D007226 3.2e-78 296.6 449 42.1
Gorai.004G207600 Gossypium raimondii HOM05D005805 ORTHO05D007226 7.1e-78 295.4 426 49.3
Oeu031590.1 Olea europaea HOM05D005805 ORTHO05D007226 9.3e-78 295.0 421 45.4
Potri.001G111100 Populus trichocarpa HOM05D005805 ORTHO05D007226 1.6e-77 294.3 436 50.2
Duzib084G0260 Durio zibethinus HOM05D005805 ORTHO05D007226 2.1e-77 293.9 459 53.4
Duzib205G1286 Durio zibethinus HOM05D005805 ORTHO05D007226 6.0e-77 292.4 434 53.0
Lj2g0007037 Lotus japonicus HOM05D005805 ORTHO05D007226 1.8e-76 290.8 474 51.9
Gorai.003G162800 Gossypium raimondii HOM05D005805 ORTHO05D007226 3.9e-76 289.7 453 53.2
Duzib068G1011 Durio zibethinus HOM05D005805 ORTHO05D007226 1.1e-75 288.1 444 41.7
Gohir.D03G155100 Gossypium hirsutum HOM05D005805 ORTHO05D007226 1.5e-75 287.7 453 53.0
Potri.003G120900 Populus trichocarpa HOM05D005805 ORTHO05D007226 1.5e-75 287.7 465 51.0
ClCG01G003160 Citrullus lanatus HOM05D005805 ORTHO05D007226 1.9e-75 287.3 492 40.4
Nn1g01331 Nelumbo nucifera HOM05D005805 ORTHO05D007226 2.5e-75 287.0 440 43.0
Gohir.A03G015238 Gossypium hirsutum HOM05D005805 ORTHO05D007226 2.1e-74 283.9 453 53.0
Lalb_Chr05g0214771 Lupinus albus HOM05D005805 ORTHO05D007226 2.8e-74 283.5 432 42.4
MD06G1071900 Malus domestica HOM05D005805 ORTHO05D007226 2.8e-74 283.5 494 46.0
Solyc08g080260.4 Solanum lycopersicum HOM05D005805 ORTHO05D007226 3.7e-74 283.1 452 43.4
THA.LOC104806368 Tarenaya hassleriana HOM05D005805 ORTHO05D007226 4.8e-74 282.7 451 50.6
Manes.01G068001 Manihot esculenta HOM05D005805 ORTHO05D007226 8.2e-74 282.0 410 54.4
arahy.Tifrunner.gnm1.ann1.8FZ8QS Arachis hypogaea HOM05D005805 ORTHO05D007226 1.4e-73 281.2 432 47.0
Prupe.5G089600 Prunus persica HOM05D005805 ORTHO05D007226 1.4e-73 281.2 507 47.3
MD04G1068600 Malus domestica HOM05D005805 ORTHO05D007226 5.3e-73 279.3 480 50.4
Medtr5g010950 Medicago truncatula HOM05D005805 ORTHO05D007226 1.3e-71 274.6 459 41.4
Sabra01G0084700 Salix brachista HOM05D005805 ORTHO05D007226 1.7e-71 274.2 477 48.8
TWI81G0996 Tripterygium wilfordii HOM05D005805 ORTHO05D007226 2.2e-71 273.9 471 50.5
FAN13G0947 Fragaria x ananassa HOM05D005805 ORTHO05D007226 6.5e-71 272.3 491 49.1
Aqoxy7G00467 Aquilegia oxysepala HOM05D005805 ORTHO05D007226 8.4e-71 271.9 397 44.3
A02p25990 Brassica napus HOM05D005805 ORTHO05D007226 1.1e-70 271.6 434 42.6
BraA02t07597Z Brassica rapa HOM05D005805 ORTHO05D007226 1.1e-70 271.6 434 42.6
Gohir.A08G178400 Gossypium hirsutum HOM05D005805 ORTHO05D007226 2.5e-70 270.4 497 48.9
BolC9t56310H Brassica oleracea HOM05D005805 ORTHO05D007226 3.2e-70 270.0 456 41.0
FvH4_5g01420 Fragaria vesca HOM05D005805 ORTHO05D007226 3.2e-70 270.0 486 46.9
CDE11G0359 Ceratophyllum demersum HOM05D005805 ORTHO05D007226 4.2e-70 269.6 491 42.0
CsaV3_5G003280 Cucumis sativus L. HOM05D005805 ORTHO05D007226 9.3e-70 268.5 376 45.5
HanXRQChr07g0188541 Helianthus annuus HOM05D005805 ORTHO05D007226 1.2e-69 268.1 407 43.7
BraA09t38298Z Brassica rapa HOM05D005805 ORTHO05D007226 2.7e-69 266.9 456 45.0
FAN18G3929 Fragaria x ananassa HOM05D005805 ORTHO05D007226 2.7e-69 266.9 486 46.7
FAN08G1094 Fragaria x ananassa HOM05D005805 ORTHO05D007226 6.1e-69 265.8 496 47.6
Cc08_g13930 Coffea canephora HOM05D005805 ORTHO05D007226 7.9e-69 265.4 456 38.2
CANSAT21G1670 Cannabis sativa HOM05D005805 ORTHO05D007226 1.0e-68 265.0 522 47.5
AL6G46500 Arabidopsis lyrata HOM05D005805 ORTHO05D007226 1.3e-68 264.6 446 48.7
Aa31LG9G10640 Aethionema arabicum HOM05D005805 ORTHO05D007226 2.3e-68 263.8 453 45.0
FAN04G0223 Fragaria x ananassa HOM05D005805 ORTHO05D007226 5.1e-68 262.7 487 45.0
MBI04_g40844_MAGBIO Magnolia biondii HOM05D005805 ORTHO05D007226 6.7e-68 262.3 453 39.5
HPP92_020989 Vanilla planifolia HOM05D005805 ORTHO05D007226 8.7e-68 261.9 456 39.9
C09p34650 Brassica napus HOM05D005805 ORTHO05D007226 1.9e-67 260.8 477 39.0
Carub.0006s3090 Capsella rubella HOM05D005805 ORTHO05D007226 3.3e-67 260.0 454 50.7
BcaB05g23807 Brassica carinata HOM05D005805 ORTHO05D007226 4.3e-67 259.6 418 46.2
A09p27320 Brassica napus HOM05D005805 ORTHO05D007226 7.4e-67 258.8 476 42.9
Thhalv10028709m.g Eutrema salsugineum HOM05D005805 ORTHO05D007226 3.7e-66 256.5 446 43.7
Os03g0667700 Oryza sativa ssp. japonica HOM05D005805 ORTHO05D007226 3.1e-65 253.4 395 41.8
CARHR254520 Cardamine hirsuta HOM05D005805 ORTHO05D007226 9.0e-65 251.9 454 45.4
Haze_08957 Corylus avellana HOM05D005805 ORTHO05D007226 1.5e-64 251.1 496 49.6
RcHm_v2.0_Chr7g0199441 Rosa chinensis HOM05D005805 ORTHO05D007226 7.7e-64 248.8 509 45.4
Sp6g05660 Schrenkiella parvula HOM05D005805 ORTHO05D007226 1.7e-63 247.7 453 41.5
ATR0757G009 Amborella trichopoda HOM05D005805 ORTHO05D007226 1.9e-62 244.2 405 41.0
Sed0020925 Sechium edule HOM05D005805 ORTHO05D007226 5.5e-62 242.7 386 41.2
Lj2A197T60 Lonicera japonica HOM05D005805 ORTHO05D007226 1.2e-61 241.5 456 38.4
TWI60G0251 Tripterygium wilfordii HOM05D005805 ORTHO05D007226 3.6e-61 240.0 486 45.5
unitig_8.g3899 Utricularia gibba HOM05D005805 ORTHO05D007226 7.9e-61 238.8 417 40.5
arahy.Tifrunner.gnm1.ann1.J6ALFQ Arachis hypogaea HOM05D005805 ORTHO05D007226 1.8e-60 237.7 501 47.5
Zm00001eb073520 Zea mays HOM05D005805 ORTHO05D007226 1.5e-59 234.6 432 38.7
AT4G11790 Arabidopsis thaliana HOM05D005805 ORTHO05D007226 2.0e-59 234.2 462 46.1
Oeu001898.3 Olea europaea HOM05D005805 ORTHO05D007226 2.0e-59 234.2 431 40.6
PSO478G0076 Papaver somniferum HOM05D005805 ORTHO05D007226 4.8e-58 229.6 565 40.0
PSO782G3262 Papaver somniferum HOM05D005805 ORTHO05D007226 1.1e-57 228.4 567 40.0
Rhsim08G0109800 Rhododendron simsii HOM05D000003 ORTHO05D000004 6.9e-57 225.7 191 62.8
Ah.02g116420 Amaranthus hybridus HOM05D005805 ORTHO05D007226 1.3e-55 221.5 457 42.0
Manes.02G028100 Manihot esculenta HOM05D005805 ORTHO05D007226 1.1e-54 218.4 368 52.7
BcaC03g16328 Brassica carinata HOM05D005805 ORTHO05D007226 2.5e-54 217.2 395 40.0
Dinv37696 Davidia involucrata HOM05D005805 ORTHO05D007226 2.3e-52 210.7 387 40.1
COL.COLO4_05276 Corchorus olitorius HOM05D005805 ORTHO05D007226 1.3e-50 204.9 141 71.6
SalBow6G0943 Salvia bowleyana HOM05D005805 ORTHO05D007226 9.1e-49 198.7 440 38.4
BcaB01g01678 Brassica carinata HOM05D005805 ORTHO05D007226 1.3e-47 194.9 430 36.5
TAR374G1484 Trochodendron aralioides HOM05D005805 ORTHO05D007226 1.6e-45 188.0 152 64.5
C02p41470 Brassica napus HOM05D005805 ORTHO05D007226 2.1e-45 187.6 399 37.6
Gohir.D08G196900 Gossypium hirsutum HOM05D005805 ORTHO05D007226 2.0e-43 181.0 140 67.9
BolC2t10164H Brassica oleracea HOM05D005805 ORTHO05D007226 3.5e-32 143.7 112 65.2
Atru.chr9.1535 Acer truncatum HOM05D005805 ORTHO05D007226 1.0e-31 142.1 176 48.9
vmacro10803 Vaccinium macrocarpon HOM05D005805 ORTHO05D007226 2.9e-31 140.6 414 32.1
Cpa.g.sc29.9 Carica papaya HOM05D005805 ORTHO05D007226 8.0e-29 132.5 143 49.0
AagrBONN_evm.TU.Sc2ySwM_344.4489 Anthoceros agrestis HOM05D005805 ORTHO05D007226 8.8e-28 129.0 365 32.3
DCAR_006764 Daucus carota HOM05D005805 ORTHO05D007226 2.0e-24 117.9 271 41.7
COL.COLO4_05274 Corchorus olitorius HOM05D005805 ORTHO05D007226 8.9e-20 102.4 71 69.0
Hma1.2p1_0002F.1_g002590 Hydrangea macrophylla HOM05D005805 ORTHO05D007226 4.4e-19 100.1 53 84.9
CBR_g49019 Chara braunii HOM05D005805 ORTHO05D007226 7.0e-17 92.8 555 24.3
SGA_v2.0_scaffold60G20821 Striga asiatica HOM05D011763 ORTHO05D014257 3.3e-14 84.0 152 38.2
SGA_v2.0_scaffold60G21020 Striga asiatica HOM05D011763 ORTHO05D014257 8.0e-13 79.3 83 50.6


User provided reference genes

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