Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc01g0008740 Simmondsia chinensis HOM05D006075 ORTHO05D007527 1.3e-205 719.5 381 100.0
EL10Ac5g12736 Beta vulgaris HOM05D006075 ORTHO05D007527 2.2e-144 516.2 364 71.4
GSVIVG01019817001 Vitis vinifera HOM05D006075 ORTHO05D007527 3.3e-140 502.3 357 72.3
Nn6g34229 Nelumbo nucifera HOM05D006075 ORTHO05D007527 1.1e-138 497.3 359 70.2
TAR629G3145 Trochodendron aralioides HOM05D006075 ORTHO05D007527 4.0e-138 495.4 361 69.8
Dinv37681 Davidia involucrata HOM05D006075 ORTHO05D007527 4.9e-136 488.4 358 70.7
CSS0042428 Camellia sinensis var. sinensis HOM05D006075 ORTHO05D007527 7.1e-135 484.6 356 69.7
Atru.chr9.1549 Acer truncatum HOM05D006075 ORTHO05D007527 9.3e-135 484.2 364 67.6
Lj2A193G48 Lonicera japonica HOM05D006075 ORTHO05D007527 1.0e-133 480.7 357 69.5
TWI81G0173 Tripterygium wilfordii HOM05D006075 ORTHO05D007527 8.7e-133 477.6 363 67.8
Ciclev10019953m.g Citrus clementina HOM05D006075 ORTHO05D007527 5.6e-132 474.9 359 68.2
Rhsim07G0094000 Rhododendron simsii HOM05D006075 ORTHO05D007527 1.1e-130 470.7 366 67.5
Manes.01G066100 Manihot esculenta HOM05D006075 ORTHO05D007527 2.4e-130 469.5 362 66.9
Potri.001G109200 Populus trichocarpa HOM05D006075 ORTHO05D007527 2.4e-130 469.5 355 65.9
Sabra01G0082500 Salix brachista HOM05D006075 ORTHO05D007527 6.9e-130 468.0 367 64.6
MD06G1073700 Malus domestica HOM05D006075 ORTHO05D007527 2.6e-129 466.1 358 67.3
Prupe.5G091900 Prunus persica HOM05D006075 ORTHO05D007527 4.5e-129 465.3 365 66.3
ECA240G3011 Erigeron canadensis HOM05D006075 ORTHO05D007527 5.8e-129 464.9 357 67.8
PSO782G2103 Papaver somniferum HOM05D006075 ORTHO05D007527 7.6e-129 464.5 373 64.1
Oeu011664.1 Olea europaea HOM05D006075 ORTHO05D007527 1.7e-128 463.4 361 67.3
PSO478G2556 Papaver somniferum HOM05D006075 ORTHO05D007527 1.7e-128 463.4 373 64.3
CiPaw.11G140500 Carya illinoinensis HOM05D006075 ORTHO05D007527 1.9e-127 459.9 359 66.3
Glyma.17G131000 Glycine max HOM05D006075 ORTHO05D007527 1.9e-127 459.9 359 66.9
Phvul.003G211900 Phaseolus vulgaris HOM05D006075 ORTHO05D007527 2.5e-127 459.5 357 66.4
HanXRQChr03g0085661 Helianthus annuus HOM05D006075 ORTHO05D007527 7.1e-127 458.0 356 68.0
QL12p017421 Quercus lobata HOM05D006075 ORTHO05D007527 7.1e-127 458.0 356 64.9
TPR.G23260 Trifolium pratense HOM05D006075 ORTHO05D007527 7.1e-127 458.0 357 64.4
CANSAT21G0515 Cannabis sativa HOM05D006075 ORTHO05D007527 9.3e-127 457.6 358 65.9
TPR.G19222 Trifolium pratense HOM05D006075 ORTHO05D007527 2.7e-126 456.1 358 65.1
Sopen08g028750 Solanum pennellii HOM05D006075 ORTHO05D007527 3.5e-126 455.7 359 66.0
Eucgr.E00536 Eucalyptus grandis HOM05D006075 ORTHO05D007527 6.0e-126 454.9 357 65.8
Lj4g0025720 Lotus japonicus HOM05D006075 ORTHO05D007527 1.0e-125 454.1 357 65.5
Solyc08g080420.4 Solanum lycopersicum HOM05D006075 ORTHO05D007527 1.3e-125 453.8 359 65.7
Psat1g082240 Pisum sativum HOM05D006075 ORTHO05D007527 3.0e-125 452.6 358 64.0
Medtr4g102820 Medicago truncatula HOM05D006075 ORTHO05D007527 3.9e-125 452.2 358 64.8
RcHm_v2.0_Chr7g0199111 Rosa chinensis HOM05D006075 ORTHO05D007527 3.9e-125 452.2 366 66.4
CAN.G981.23 Capsicum annuum HOM05D006075 ORTHO05D007527 8.7e-125 451.1 359 65.7
Thecc.02G127300 Theobroma cacao HOM05D006075 ORTHO05D007527 8.7e-125 451.1 356 66.3
Lsat_1_v5_gn_6_87521 Lactuca sativa HOM05D006075 ORTHO05D007527 1.1e-124 450.7 356 67.4
FvH4_5g01570 Fragaria vesca HOM05D006075 ORTHO05D007527 1.9e-124 449.9 358 66.2
FAN08G0877 Fragaria x ananassa HOM05D006075 ORTHO05D007527 4.3e-124 448.7 358 65.9
FAN18G0544 Fragaria x ananassa HOM05D006075 ORTHO05D007527 4.3e-124 448.7 358 65.9
arahy.Tifrunner.gnm1.ann1.M2EVQD Arachis hypogaea HOM05D006075 ORTHO05D007527 9.7e-124 447.6 360 65.0
Migut.E01290 Erythranthe guttata HOM05D006075 ORTHO05D007527 2.2e-123 446.4 355 64.5
PGR042G3166 Punica granatum HOM05D006075 ORTHO05D007527 2.8e-123 446.0 378 61.9
FAN04G1557 Fragaria x ananassa HOM05D006075 ORTHO05D007527 3.7e-123 445.7 358 65.9
Gorai.002G011900 Gossypium raimondii HOM05D006075 ORTHO05D007527 3.7e-123 445.7 361 65.1
MD04G1066500 Malus domestica HOM05D006075 ORTHO05D007527 4.8e-123 445.3 350 66.3
MSTRG.13821 Avicennia marina HOM05D006075 ORTHO05D007527 6.3e-123 444.9 355 63.4
Gohir.A01G010200 Gossypium hirsutum HOM05D006075 ORTHO05D007527 1.4e-122 443.7 361 65.4
Lalb_Chr09g0333281 Lupinus albus HOM05D006075 ORTHO05D007527 1.8e-122 443.4 358 64.2
Psat4g067760 Pisum sativum HOM05D006075 ORTHO05D007527 2.4e-122 443.0 358 63.7
Gohir.D01G009800 Gossypium hirsutum HOM05D006075 ORTHO05D007527 6.9e-122 441.4 377 62.3
Cc08_g14070 Coffea canephora HOM05D006075 ORTHO05D007527 1.2e-121 440.7 356 64.6
Lalb_Chr16g0389751 Lupinus albus HOM05D006075 ORTHO05D007527 2.6e-121 439.5 357 62.5
THA.LOC104818186 Tarenaya hassleriana HOM05D006075 ORTHO05D007527 1.7e-120 436.8 360 63.3
FAN08G0114 Fragaria x ananassa HOM05D006075 ORTHO05D007527 2.2e-120 436.4 376 63.0
AT1G63110 Arabidopsis thaliana HOM05D006075 ORTHO05D007527 2.9e-120 436.0 358 64.5
Carub.0002s0185 Capsella rubella HOM05D006075 ORTHO05D007527 2.9e-120 436.0 355 63.7
BcaC04g22472 Brassica carinata HOM05D006075 ORTHO05D007527 5.5e-119 431.8 355 62.8
AL2G12410 Arabidopsis lyrata HOM05D006075 ORTHO05D007527 1.2e-118 430.6 358 64.0
C09p18910 Brassica napus HOM05D006075 ORTHO05D007527 3.6e-118 429.1 356 62.6
A09p15680 Brassica napus HOM05D006075 ORTHO05D007527 4.6e-118 428.7 359 63.8
BraA09t37209Z Brassica rapa HOM05D006075 ORTHO05D007527 4.6e-118 428.7 359 63.8
Thhalv10023435m.g Eutrema salsugineum HOM05D006075 ORTHO05D007527 7.9e-118 427.9 361 62.6
Sp2g01480 Schrenkiella parvula HOM05D006075 ORTHO05D007527 2.3e-117 426.4 361 62.9
vmacro13924 Vaccinium macrocarpon HOM05D006075 ORTHO05D007527 2.3e-117 426.4 382 59.9
MELO3C005634.2 Cucumis melo HOM05D006075 ORTHO05D007527 6.7e-117 424.9 357 61.6
VMungo1215G1399 Vigna mungo HOM05D006075 ORTHO05D007527 6.7e-117 424.9 324 66.4
arahy.Tifrunner.gnm1.ann1.S8HR28 Arachis hypogaea HOM05D006075 ORTHO05D007527 3.3e-116 422.5 360 63.1
Os02g0688900 Oryza sativa ssp. japonica HOM05D006075 ORTHO05D007527 3.3e-116 422.5 356 61.2
CsaV3_5G003210 Cucumis sativus L. HOM05D006075 ORTHO05D007527 4.3e-116 422.2 357 61.3
BcaB07g31383 Brassica carinata HOM05D006075 ORTHO05D007527 7.4e-116 421.4 357 61.3
Aa31LG2G590 Aethionema arabicum HOM05D006075 ORTHO05D007527 1.7e-115 420.2 385 59.2
HPP92_001310 Vanilla planifolia HOM05D006075 ORTHO05D007527 1.8e-114 416.8 355 60.0
Sed0007766 Sechium edule HOM05D006075 ORTHO05D007527 2.4e-114 416.4 356 61.8
BolC9t54793H Brassica oleracea HOM05D006075 ORTHO05D007527 4.5e-113 412.1 359 61.0
Carub.0001s1243 Capsella rubella HOM05D006075 ORTHO05D007527 3.6e-110 402.5 357 61.3
Glyma.05G049100 Glycine max HOM05D006075 ORTHO05D007527 1.0e-109 401.0 312 64.7
SEGI_27555 Sequoiadendron giganteum HOM05D006075 ORTHO05D007527 1.0e-109 401.0 366 55.5
AT1G12730 Arabidopsis thaliana HOM05D006075 ORTHO05D007527 5.1e-109 398.7 356 60.1
SalBow1G6580 Salvia bowleyana HOM05D006075 ORTHO05D007527 1.7e-107 393.7 458 49.1
CDE11G0531 Ceratophyllum demersum HOM05D006075 ORTHO05D007527 6.3e-107 391.7 356 59.3
Actinidia05225 Actinidia chinensis HOM05D006075 ORTHO05D007527 1.2e-105 387.5 364 58.8
SGA_v2.0_scaffold385G50455 Striga asiatica HOM05D006075 ORTHO05D007527 4.5e-105 385.6 359 57.9
TAR629G0535 Trochodendron aralioides HOM05D006075 ORTHO05D007527 1.1e-103 380.9 303 65.3
Peaxi162Scf00714g00528 Petunia axillaris HOM05D006075 ORTHO05D007527 3.0e-101 372.9 424 51.7
HanXRQChr11g0323321 Helianthus annuus HOM05D006075 ORTHO05D007527 2.5e-95 353.2 357 56.6
Hund14727 Selenicereus undatus HOM05D006075 ORTHO05D007527 7.2e-95 351.7 357 55.7
AL1G24320 Arabidopsis lyrata HOM05D006075 ORTHO05D007527 9.4e-95 351.3 358 55.3
FAN13G2280 Fragaria x ananassa HOM05D006075 ORTHO05D007527 4.0e-93 345.9 288 62.5
COL.COLO4_32412 Corchorus olitorius HOM05D006075 ORTHO05D007527 5.3e-90 335.5 314 59.2
CARHR048400 Cardamine hirsuta HOM05D006075 ORTHO05D007527 7.7e-89 331.6 298 59.4
Zm00001eb251050 Zea mays HOM05D006075 ORTHO05D007527 2.5e-87 326.6 297 56.9
Nitab4.5_0002853g0070 Nicotiana tabacum HOM05D006075 ORTHO05D007527 9.4e-87 324.7 359 52.9
ClCG01G003090 Citrullus lanatus HOM05D006075 ORTHO05D007527 4.0e-85 319.3 360 51.7
Nitab4.5_0016932g0010 Nicotiana tabacum HOM05D006075 ORTHO05D007527 6.8e-85 318.5 323 55.4
unitig_744.g24646 Utricularia gibba HOM05D006075 ORTHO05D007527 8.8e-85 318.2 354 51.1
PSO478G1113 Papaver somniferum HOM05D006075 ORTHO05D007527 6.3e-83 312.0 234 65.8
Pp3c9_23740 Physcomitrium patens HOM05D006075 ORTHO05D007527 2.4e-82 310.1 375 46.4
Mapoly0001s0316 Marchantia polymorpha HOM05D006075 ORTHO05D007527 3.3e-79 299.7 353 47.0
Ah.12g057560 Amaranthus hybridus HOM05D006075 ORTHO05D007527 6.1e-78 295.4 366 49.2
ATR0322G053 Amborella trichopoda HOM05D006075 ORTHO05D007527 4.0e-77 292.7 238 60.1
AagrBONN_evm.TU.Sc2ySwM_117.1004 Anthoceros agrestis HOM05D006075 ORTHO05D007527 4.0e-77 292.7 356 45.8
Manes.02G026900 Manihot esculenta HOM05D006075 ORTHO05D007527 8.9e-77 291.6 399 45.6
PGSC0003DMG400003033 Solanum tuberosum HOM05D006075 ORTHO05D007527 8.9e-77 291.6 356 49.4
CARHR013020 Cardamine hirsuta HOM05D006075 ORTHO05D007527 1.2e-76 291.2 305 50.8
SMO270G0127 Selaginella moellendorffii HOM05D006075 ORTHO05D007527 1.4e-74 284.3 376 43.6
Duzib052G1148 Durio zibethinus HOM05D006075 ORTHO05D007527 5.9e-73 278.9 372 47.8
Cpa.g.sc74.79 Carica papaya HOM05D006075 ORTHO05D007527 2.9e-72 276.6 280 53.9
Dinv39003 Davidia involucrata HOM05D006075 ORTHO05D007527 3.1e-69 266.5 283 52.7
CSS0009197 Camellia sinensis var. sinensis HOM05D006075 ORTHO05D007527 1.5e-63 247.7 308 47.1
Haze_08940 Corylus avellana HOM05D006075 ORTHO05D007527 2.2e-59 233.8 179 66.5
Sed0016840 Sechium edule HOM05D006075 ORTHO05D007527 3.7e-51 206.5 179 61.5
AUR62017286 Chenopodium quinoa HOM05D006075 ORTHO05D007527 3.3e-47 193.4 167 64.7
Ca_20251_v3 Cicer arietinum L. HOM05D006075 ORTHO05D007527 8.9e-45 185.3 142 67.6
TAR636G1294 Trochodendron aralioides HOM05D006075 ORTHO05D007527 2.7e-41 173.7 155 62.6
Os01g0870201 Oryza sativa ssp. japonica HOM05D006075 ORTHO05D007527 1.5e-39 167.9 230 43.9
CBR_g17923 Chara braunii HOM05D006075 ORTHO05D007527 2.1e-38 164.1 672 24.4
AUR62010644 Chenopodium quinoa HOM05D006075 ORTHO05D007527 2.8e-38 163.7 167 56.9
ATR0322G060 Amborella trichopoda HOM05D006075 ORTHO05D007527 2.5e-18 97.4 80 66.2
MCO15G123 Micromonas commoda HOM05D006075 ORTHO05D007527 4.2e-18 96.7 353 27.8
Eucgr.H02816 Eucalyptus grandis HOM05D005128 ORTHO05D006227 3.0e-16 90.5 68 64.7
PRCOL_00005762 Prasinoderma coloniale HOM05D006075 ORTHO05D007527 7.4e-15 85.9 432 23.4
Actinidia27405 Actinidia chinensis HOM05D006075 ORTHO05D007527 5.3e-13 79.7 62 67.7
Cre03.g150400 Chlamydomonas reinhardtii HOM05D006075 ORTHO05D007527 1.2e-12 78.6 204 30.9
Lsat_1_v5_gn_5_145360 Lactuca sativa HOM05D000561 ORTHO05D008162 1.2e-09 68.6 71 50.7


User provided reference genes

Program Settings