Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc01g0007980 Simmondsia chinensis HOM05D006150 ORTHO05D007745 1.7e-176 622.5 302 100.0
COL.COLO4_07285 Corchorus olitorius HOM05D006150 ORTHO05D007745 3.2e-114 415.6 244 77.0
Gohir.A12G212700 Gossypium hirsutum HOM05D006150 ORTHO05D007745 9.4e-114 414.1 245 78.0
EL10Ac5g12270 Beta vulgaris HOM05D006150 ORTHO05D007745 1.2e-113 413.7 244 79.9
TAR636G1440 Trochodendron aralioides HOM05D006150 ORTHO05D007745 1.6e-113 413.3 246 76.8
Gorai.008G230800 Gossypium raimondii HOM05D006150 ORTHO05D007745 6.1e-113 411.4 245 77.1
Gohir.D12G215200 Gossypium hirsutum HOM05D006150 ORTHO05D007745 5.1e-112 408.3 245 76.3
Ah.12g053980 Amaranthus hybridus HOM05D006150 ORTHO05D007745 8.8e-112 407.5 248 77.0
Duzib084G0008 Durio zibethinus HOM05D006150 ORTHO05D007745 2.0e-111 406.4 247 75.3
Hma1.2p1_0570F.1_g180430 Hydrangea macrophylla HOM05D006150 ORTHO05D007745 2.6e-111 406.0 242 75.6
Thecc.03G240100 Theobroma cacao HOM05D006150 ORTHO05D007745 5.7e-111 404.8 245 75.5
Rhsim07G0136400 Rhododendron simsii HOM05D006150 ORTHO05D007745 1.3e-110 403.7 248 75.4
PGSC0003DMG400026243 Solanum tuberosum HOM05D006150 ORTHO05D007745 2.2e-110 402.9 248 75.8
CARHR223610 Cardamine hirsuta HOM05D006150 ORTHO05D007745 6.3e-110 401.4 238 76.5
ClCG10G005070 Citrullus lanatus HOM05D006150 ORTHO05D007745 8.2e-110 401.0 248 75.4
CsaV3_3G004750 Cucumis sativus L. HOM05D006150 ORTHO05D007745 1.4e-109 400.2 248 75.4
AT4G17050 Arabidopsis thaliana HOM05D006150 ORTHO05D007745 2.4e-109 399.4 239 77.4
CSS0019555 Camellia sinensis var. sinensis HOM05D006150 ORTHO05D007745 2.4e-109 399.4 244 75.0
AL7G37660 Arabidopsis lyrata HOM05D006150 ORTHO05D007745 3.1e-109 399.1 239 77.0
Lj8A277T42 Lonicera japonica HOM05D006150 ORTHO05D007745 3.1e-109 399.1 243 74.1
Ciclev10021365m.g Citrus clementina HOM05D006150 ORTHO05D007745 5.3e-109 398.3 248 73.4
Solyc08g077840.3 Solanum lycopersicum HOM05D006150 ORTHO05D007745 5.3e-109 398.3 248 74.6
BraA03t14117Z Brassica rapa HOM05D006150 ORTHO05D007745 7.0e-109 397.9 239 76.6
Manes.01G089000 Manihot esculenta HOM05D006150 ORTHO05D007745 7.0e-109 397.9 239 77.0
BcaNung04656 Brassica carinata HOM05D006150 ORTHO05D007745 9.1e-109 397.5 239 76.2
CAN.G572.11 Capsicum annuum HOM05D006150 ORTHO05D007745 9.1e-109 397.5 241 77.2
Actinidia02195 Actinidia chinensis HOM05D006150 ORTHO05D007745 1.2e-108 397.1 242 74.8
MBI04_g13858_MAGBIO Magnolia biondii HOM05D006150 ORTHO05D007745 1.2e-108 397.1 246 74.4
CANSAT21G0710 Cannabis sativa HOM05D006150 ORTHO05D007745 1.5e-108 396.7 243 77.0
Cfa012327 Carpinus fangiana HOM05D006150 ORTHO05D007745 1.5e-108 396.7 244 76.6
C07p48520 Brassica napus HOM05D006150 ORTHO05D007745 2.0e-108 396.4 239 76.2
BolC7t45360H Brassica oleracea HOM05D006150 ORTHO05D007745 2.0e-108 396.4 239 76.2
Sopen08g026350 Solanum pennellii HOM05D006150 ORTHO05D007745 2.6e-108 396.0 240 76.7
MSTRG.6640 Avicennia marina HOM05D006150 ORTHO05D007745 4.5e-108 395.2 246 74.0
C07p48460 Brassica napus HOM05D006150 ORTHO05D007745 5.9e-108 394.8 239 76.6
TWI60G0542 Tripterygium wilfordii HOM05D006150 ORTHO05D007745 1.0e-107 394.0 239 74.1
Cc08_g11330 Coffea canephora HOM05D006150 ORTHO05D007745 1.3e-107 393.7 246 73.2
RcHm_v2.0_Chr7g0205681 Rosa chinensis HOM05D006150 ORTHO05D007745 1.7e-107 393.3 248 74.6
A01p20260 Brassica napus HOM05D006150 ORTHO05D007745 2.2e-107 392.9 239 76.6
Carub.0007s2437 Capsella rubella HOM05D006150 ORTHO05D007745 2.9e-107 392.5 239 74.9
FAN08G0760 Fragaria x ananassa HOM05D006150 ORTHO05D007745 2.9e-107 392.5 248 74.6
A03p50280 Brassica napus HOM05D006150 ORTHO05D007745 5.0e-107 391.7 239 76.2
BraA01t01953Z Brassica rapa HOM05D006150 ORTHO05D007745 5.0e-107 391.7 240 76.2
MD04G1055500 Malus domestica HOM05D006150 ORTHO05D007745 5.0e-107 391.7 248 73.8
Potri.003G083600 Populus trichocarpa HOM05D006150 ORTHO05D007745 6.5e-107 391.3 247 74.5
BolC1t02493H Brassica oleracea HOM05D006150 ORTHO05D007745 1.1e-106 390.6 239 75.7
PSO732G0290 Papaver somniferum HOM05D006150 ORTHO05D007745 1.1e-106 390.6 239 77.4
FAN04G1813 Fragaria x ananassa HOM05D006150 ORTHO05D007745 1.5e-106 390.2 247 74.9
BcaC06g33538 Brassica carinata HOM05D006150 ORTHO05D007745 1.9e-106 389.8 239 75.3
PSO675G6476 Papaver somniferum HOM05D006150 ORTHO05D007745 2.5e-106 389.4 239 76.6
BcaNung00130 Brassica carinata HOM05D006150 ORTHO05D007745 3.2e-106 389.0 239 75.7
THA.LOC104807929 Tarenaya hassleriana HOM05D006150 ORTHO05D007745 4.2e-106 388.7 246 72.4
CiPaw.11G072300 Carya illinoinensis HOM05D006150 ORTHO05D007745 7.2e-106 387.9 249 73.1
Eucgr.D02133 Eucalyptus grandis HOM05D006150 ORTHO05D007745 9.4e-106 387.5 246 74.8
Sp7g17140 Schrenkiella parvula HOM05D006150 ORTHO05D007745 9.4e-106 387.5 239 74.1
Sed0022790 Sechium edule HOM05D006150 ORTHO05D007745 2.7e-105 386.0 242 73.6
Atru.chr9.1206 Acer truncatum HOM05D006150 ORTHO05D007745 4.7e-105 385.2 243 73.7
C07p48390 Brassica napus HOM05D006150 ORTHO05D007745 4.7e-105 385.2 239 75.7
DCAR_008330 Daucus carota HOM05D006150 ORTHO05D007745 6.1e-105 384.8 242 74.0
FvH4_5g20400 Fragaria vesca HOM05D006150 ORTHO05D007745 6.1e-105 384.8 248 73.4
HanXRQChr17g0534011 Helianthus annuus HOM05D006150 ORTHO05D007745 8.0e-105 384.4 243 73.3
arahy.Tifrunner.gnm1.ann1.IPM3U6 Arachis hypogaea HOM05D006150 ORTHO05D007745 1.4e-104 383.6 246 73.2
SalBow7G3619 Salvia bowleyana HOM05D006150 ORTHO05D007745 1.4e-104 383.6 266 68.8
Lalb_Chr09g0329771 Lupinus albus HOM05D006150 ORTHO05D007745 4.0e-104 382.1 250 72.4
Haze_08363 Corylus avellana HOM05D006150 ORTHO05D007745 2.0e-103 379.8 274 68.6
ECA234G2169 Erigeron canadensis HOM05D006150 ORTHO05D007745 2.6e-103 379.4 239 72.4
PGR031G0533 Punica granatum HOM05D006150 ORTHO05D007745 1.7e-102 376.7 219 78.5
VMungo0251G1767 Vigna mungo HOM05D006150 ORTHO05D007745 2.8e-102 375.9 246 68.7
Nn6g33757 Nelumbo nucifera HOM05D006150 ORTHO05D007745 3.7e-102 375.6 246 72.0
arahy.Tifrunner.gnm1.ann1.YY6LCE Arachis hypogaea HOM05D006150 ORTHO05D007745 6.3e-102 374.8 246 72.8
Glyma.17G148400 Glycine max HOM05D006150 ORTHO05D007745 1.1e-101 374.0 246 70.7
Glyma.05G066500 Glycine max HOM05D006150 ORTHO05D007745 1.8e-101 373.2 246 70.7
Ca_22017_v3 Cicer arietinum L. HOM05D006150 ORTHO05D007745 5.3e-101 371.7 247 68.4
PSO732G0039 Papaver somniferum HOM05D006150 ORTHO05D007745 5.3e-101 371.7 226 77.0
Phvul.003G225600 Phaseolus vulgaris HOM05D006150 ORTHO05D007745 5.3e-101 371.7 246 69.5
Nitab4.5_0000500g0240 Nicotiana tabacum HOM05D006150 ORTHO05D007745 3.5e-100 369.0 245 72.7
Psat4g076080 Pisum sativum HOM05D006150 ORTHO05D007745 5.9e-100 368.2 247 68.4
CDE12G0966 Ceratophyllum demersum HOM05D006150 ORTHO05D007745 1.0e-99 367.5 248 68.5
Lj4g0002003 Lotus japonicus HOM05D006150 ORTHO05D007745 1.7e-99 366.7 246 69.1
Medtr4g099290 Medicago truncatula HOM05D006150 ORTHO05D007745 1.7e-99 366.7 248 68.5
Aqoxy5G02622 Aquilegia oxysepala HOM05D006150 ORTHO05D007745 3.8e-99 365.5 222 75.7
ATR0665G013 Amborella trichopoda HOM05D006150 ORTHO05D007745 6.5e-99 364.8 247 69.6
Nitab4.5_0009451g0030 Nicotiana tabacum HOM05D006150 ORTHO05D007745 8.5e-99 364.4 254 69.7
QL12p008732 Quercus lobata HOM05D006150 ORTHO05D007745 8.5e-99 364.4 351 55.6
TPR.G25747 Trifolium pratense HOM05D006150 ORTHO05D007745 2.5e-98 362.8 247 68.4
Os07g0495000 Oryza sativa ssp. japonica HOM05D006150 ORTHO05D007745 7.2e-98 361.3 240 70.8
Zm00001eb322060 Zea mays HOM05D006150 ORTHO05D007745 6.1e-97 358.2 237 69.6
unitig_746.g26644 Utricularia gibba HOM05D006150 ORTHO05D007745 8.0e-97 357.8 243 67.1
Thhalv10026866m.g Eutrema salsugineum HOM05D006150 ORTHO05D007745 9.1e-93 344.4 252 67.9
Peaxi162Scf00301g00519 Petunia axillaris HOM05D006150 ORTHO05D007745 2.9e-91 339.3 247 65.6
Aa31LG2G13130 Aethionema arabicum HOM05D006150 ORTHO05D007745 3.8e-91 339.0 246 66.3
HPP92_025744 Vanilla planifolia HOM05D006150 ORTHO05D007745 3.8e-91 339.0 242 67.8
BcaC09g50439 Brassica carinata HOM05D006150 ORTHO05D007745 1.5e-87 327.0 240 67.1
C01p25410 Brassica napus HOM05D006150 ORTHO05D007745 1.5e-87 327.0 240 67.1
SEGI_33649 Sequoiadendron giganteum HOM05D006150 ORTHO05D007745 6.3e-86 321.6 241 64.7
Dinv28876 Davidia involucrata HOM05D006150 ORTHO05D007745 1.8e-85 320.1 205 73.2
vmacro00832 Vaccinium macrocarpon HOM05D006150 ORTHO05D007745 7.7e-84 314.7 255 62.0
AagrBONN_evm.TU.Sc2ySwM_228.2274 Anthoceros agrestis HOM05D006150 ORTHO05D007745 1.5e-82 310.5 221 67.0
Pp3c9_12580 Physcomitrium patens HOM05D006150 ORTHO05D007745 6.1e-81 305.1 241 61.8
Oeu012348.1 Olea europaea HOM05D006150 ORTHO05D007745 2.9e-75 286.2 170 77.1
Prupe.5G055300 Prunus persica HOM05D006150 ORTHO05D007745 1.1e-74 284.3 171 76.6
Mapoly0072s0097 Marchantia polymorpha HOM05D006150 ORTHO05D007745 2.1e-73 280.0 218 60.6
AUR62007167 Chenopodium quinoa HOM05D006150 ORTHO05D007745 6.2e-73 278.5 161 81.4
AUR62018839 Chenopodium quinoa HOM05D006150 ORTHO05D007745 8.0e-73 278.1 161 80.1
GSVIVG01003685001 Vitis vinifera HOM05D006150 ORTHO05D007745 1.8e-72 276.9 242 58.7
SGA_v2.0_scaffold181G39680 Striga asiatica HOM05D006150 ORTHO05D007745 4.6e-68 262.3 201 65.2
Potri.001G150800 Populus trichocarpa HOM05D006150 ORTHO05D007745 7.3e-66 255.0 202 63.4
Lsat_1_v5_gn_3_15361 Lactuca sativa HOM05D006150 ORTHO05D007745 4.7e-65 252.3 213 61.0
Actinidia25909 Actinidia chinensis HOM05D006150 ORTHO05D007745 7.1e-53 211.8 233 48.5
Hma1.2p1_0570F.1_g180440 Hydrangea macrophylla HOM05D006150 ORTHO05D007745 1.2e-52 211.1 128 75.0
Sabra01G0120800 Salix brachista HOM05D006150 ORTHO05D007745 1.2e-52 211.1 156 65.4
MD06G1047100 Malus domestica HOM05D006150 ORTHO05D007745 3.5e-52 209.5 226 49.1
FAN18G0603 Fragaria x ananassa HOM05D006150 ORTHO05D007745 7.3e-50 201.8 137 72.3
MCO07G379 Micromonas commoda HOM05D006150 ORTHO05D007745 3.6e-49 199.5 229 44.1
Cre06.g290000 Chlamydomonas reinhardtii HOM05D006150 ORTHO05D007745 6.2e-49 198.7 219 47.5
MELO3C014174.2 Cucumis melo HOM05D006150 ORTHO05D007745 5.4e-45 185.7 254 44.9
MCO04G282 Micromonas commoda HOM05D006150 ORTHO05D007745 4.8e-41 172.6 216 43.1
PSO717G0125 Papaver somniferum HOM05D006150 ORTHO05D007745 2.5e-34 150.2 92 73.9
Sabra01G0120600 Salix brachista HOM05D006150 ORTHO05D007745 3.2e-29 133.3 121 55.4
BcaC01g03436 Brassica carinata HOM05D006150 ORTHO05D007745 5.5e-29 132.5 103 59.2
GSVIVG01021810001 Vitis vinifera HOM05D006150 ORTHO05D007745 8.2e-17 92.0 67 64.2
CSS0048254 Camellia sinensis var. sinensis HOM05D006150 ORTHO05D007745 4.5e-15 86.3 56 73.2
Cpa.g.sc98.35 Carica papaya HOM05D006150 ORTHO05D007745 8.4e-14 82.0 56 64.3
Oeu040463.1 Olea europaea HOM05D001574 ORTHO05D000708 7.4e-10 68.9 57 56.1
MELO3C000773.2 Cucumis melo HOM05D006150 ORTHO05D007745 3.1e-08 63.5 40 75.0
Cpa.g.sc98.38 Carica papaya HOM05D006150 ORTHO05D007745 5.9e-07 59.3 40 62.5
Lsat_1_v5_gn_6_74120 Lactuca sativa HOM05D006150 ORTHO05D233887 1.3e-06 58.2 33 72.7
Cpa.g.sc3814.1 Carica papaya HOM05D006150 ORTHO05D007745 2.2e-06 57.4 37 67.6


User provided reference genes

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