Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc01g0007760 Simmondsia chinensis HOM05D006197 ORTHO05D007718 1.0e-42 176.4 92 100.0
Ciclev10033154m.g Citrus clementina HOM05D006197 ORTHO05D007718 1.9e-25 119.0 63 87.3
Gohir.A04G000300 Gossypium hirsutum HOM05D006197 ORTHO05D007718 3.6e-24 114.8 66 84.8
Gohir.D08G180000 Gossypium hirsutum HOM05D006197 ORTHO05D007718 3.6e-24 114.8 66 84.8
Gorai.004G188500 Gossypium raimondii HOM05D006197 ORTHO05D007718 3.6e-24 114.8 66 84.8
Potri.001G146700 Populus trichocarpa HOM05D006197 ORTHO05D007718 3.6e-24 114.8 95 61.1
Duzib205G0278 Durio zibethinus HOM05D006197 ORTHO05D007718 4.7e-24 114.4 91 69.2
AUR62007231 Chenopodium quinoa HOM05D006197 ORTHO05D007718 6.1e-24 114.0 93 62.4
GSVIVG01013230001 Vitis vinifera HOM05D006197 ORTHO05D007718 6.1e-24 114.0 89 65.2
Cpa.g.sc6.409 Carica papaya HOM05D006197 ORTHO05D007718 8.0e-24 113.6 65 84.6
AUR62018769 Chenopodium quinoa HOM05D006197 ORTHO05D007718 8.0e-24 113.6 93 62.4
MD16G1269400 Malus domestica HOM05D006197 ORTHO05D007718 8.0e-24 113.6 67 79.1
FAN04G1051 Fragaria x ananassa HOM05D006197 ORTHO05D007718 1.0e-23 113.2 86 69.8
FAN13G1034 Fragaria x ananassa HOM05D006197 ORTHO05D007718 1.0e-23 113.2 86 69.8
SalBow1G7863 Salvia bowleyana HOM05D006197 ORTHO05D007718 1.0e-23 113.2 64 84.4
Gohir.A08G159600 Gossypium hirsutum HOM05D006197 ORTHO05D007718 1.4e-23 112.8 66 83.3
Rhsim11G0011100 Rhododendron simsii HOM05D006197 ORTHO05D007718 1.8e-23 112.5 96 60.4
Manes.15G173000 Manihot esculenta HOM05D006197 ORTHO05D007718 2.3e-23 112.1 63 81.0
Atru.chr6.1773 Acer truncatum HOM05D006197 ORTHO05D007718 3.0e-23 111.7 64 82.8
Duzib068G0126 Durio zibethinus HOM05D006197 ORTHO05D007718 3.0e-23 111.7 66 81.8
COL.COLO4_17110 Corchorus olitorius HOM05D006197 ORTHO05D007718 4.0e-23 111.3 66 81.8
Gorai.008G229000 Gossypium raimondii HOM05D006197 ORTHO05D007718 4.0e-23 111.3 91 65.9
Prupe.5G046200 Prunus persica HOM05D006197 ORTHO05D007718 5.2e-23 110.9 85 67.1
Sabra01G0115400 Salix brachista HOM05D006197 ORTHO05D007718 6.8e-23 110.5 95 58.9
PGSC0003DMG400024214 Solanum tuberosum HOM05D006197 ORTHO05D007718 6.8e-23 110.5 84 67.9
Ah.12g053650 Amaranthus hybridus HOM05D006197 ORTHO05D007718 8.8e-23 110.2 88 62.5
FAN18G0540 Fragaria x ananassa HOM05D006197 ORTHO05D007718 8.8e-23 110.2 63 84.1
Hma1.2p1_0311F.1_g121310 Hydrangea macrophylla HOM05D006197 ORTHO05D007718 8.8e-23 110.2 64 82.8
THA.LOC104819961 Tarenaya hassleriana HOM05D006197 ORTHO05D007718 8.8e-23 110.2 65 83.1
Solyc08g077280.1 Solanum lycopersicum HOM05D006197 ORTHO05D007718 1.2e-22 109.8 84 66.7
Sopen05g026900 Solanum pennellii HOM05D006197 ORTHO05D007718 1.2e-22 109.8 84 66.7
Sopen08g025860 Solanum pennellii HOM05D006197 ORTHO05D007718 1.2e-22 109.8 84 66.7
Gohir.D12G213400 Gossypium hirsutum HOM05D006197 ORTHO05D007718 1.5e-22 109.4 91 63.7
Thecc.03G234100 Theobroma cacao HOM05D006197 ORTHO05D007718 1.5e-22 109.4 66 81.8
Nitab4.5_0002055g0120 Nicotiana tabacum HOM05D006197 ORTHO05D007718 2.0e-22 109.0 84 67.9
Nitab4.5_0006693g0020 Nicotiana tabacum HOM05D006197 ORTHO05D007718 2.0e-22 109.0 84 67.9
Phvul.002G004500 Phaseolus vulgaris HOM05D006197 ORTHO05D007718 2.0e-22 109.0 97 55.7
Cc00_g31810 Coffea canephora HOM05D006197 ORTHO05D007718 2.6e-22 108.6 65 80.0
Haze_08298 Corylus avellana HOM05D006197 ORTHO05D007718 2.6e-22 108.6 79 68.4
Cc08_g01810 Coffea canephora HOM05D006197 ORTHO05D007718 3.4e-22 108.2 65 80.0
Dinv28915 Davidia involucrata HOM05D006197 ORTHO05D007718 3.4e-22 108.2 64 81.2
VMungo1215G3393 Vigna mungo HOM05D006197 ORTHO05D007718 3.4e-22 108.2 100 55.0
AL5G41940 Arabidopsis lyrata HOM05D006197 ORTHO05D007718 4.4e-22 107.8 84 64.3
AT3G59840 Arabidopsis thaliana HOM05D006197 ORTHO05D007718 4.4e-22 107.8 84 64.3
EL10Ac5g12195 Beta vulgaris HOM05D006197 ORTHO05D007718 4.4e-22 107.8 91 62.6
Carub.0005s2656 Capsella rubella HOM05D006197 ORTHO05D007718 4.4e-22 107.8 84 64.3
Cc00_g23310 Coffea canephora HOM05D006197 ORTHO05D007718 4.4e-22 107.8 65 78.5
FAN08G0099 Fragaria x ananassa HOM05D006197 ORTHO05D007718 4.4e-22 107.8 62 83.9
CiPaw.11G087500 Carya illinoinensis HOM05D006197 ORTHO05D007718 5.7e-22 107.5 63 82.5
Cc00_g30230 Coffea canephora HOM05D006197 ORTHO05D007718 5.7e-22 107.5 65 80.0
DCAR_008300 Daucus carota HOM05D006197 ORTHO05D007718 5.7e-22 107.5 64 79.7
Lsat_1_v5_gn_6_66400 Lactuca sativa HOM05D006197 ORTHO05D007718 5.7e-22 107.5 64 81.2
Sp5g03300 Schrenkiella parvula HOM05D006197 ORTHO05D007718 5.7e-22 107.5 65 80.0
VMungo1215G1228 Vigna mungo HOM05D006197 ORTHO05D007718 5.7e-22 107.5 99 55.6
Cc00_g26570 Coffea canephora HOM05D006197 ORTHO05D007718 7.5e-22 107.1 65 78.5
Sed0016057 Sechium edule HOM05D006197 ORTHO05D007718 7.5e-22 107.1 63 79.4
CANSAT64G2368 Cannabis sativa HOM05D006197 ORTHO05D007718 9.8e-22 106.7 63 79.4
BcaC07g40556 Brassica carinata HOM05D006197 ORTHO05D007718 1.3e-21 106.3 65 78.5
BcaC08g45013 Brassica carinata HOM05D006197 ORTHO05D007718 1.3e-21 106.3 65 78.5
A07p24860 Brassica napus HOM05D006197 ORTHO05D007718 1.3e-21 106.3 65 78.5
A09p52120 Brassica napus HOM05D006197 ORTHO05D007718 1.3e-21 106.3 65 78.5
BolC6t37808H Brassica oleracea HOM05D006197 ORTHO05D007718 1.3e-21 106.3 65 78.5
BolC8t51081H Brassica oleracea HOM05D000403 ORTHO05D004426 1.3e-21 106.3 65 78.5
BraA07t30130Z Brassica rapa HOM05D006197 ORTHO05D007718 1.3e-21 106.3 65 78.5
CARHR170180 Cardamine hirsuta HOM05D006197 ORTHO05D007718 1.3e-21 106.3 65 78.5
Migut.N01790 Erythranthe guttata HOM05D006197 ORTHO05D007718 1.3e-21 106.3 66 78.8
Glyma.01G201200 Glycine max HOM05D006197 ORTHO05D007718 1.3e-21 106.3 64 76.6
Peaxi162Scf00084g00099 Petunia axillaris HOM05D006197 ORTHO05D007718 1.3e-21 106.3 91 61.5
RcHm_v2.0_Chr7g0208331 Rosa chinensis HOM05D006197 ORTHO05D007718 1.3e-21 106.3 63 84.1
Cfa012386 Carpinus fangiana HOM05D006197 ORTHO05D007718 1.7e-21 105.9 79 67.1
Thhalv10006335m.g Eutrema salsugineum HOM05D006197 ORTHO05D007718 1.7e-21 105.9 65 78.5
Nn1g03717 Nelumbo nucifera HOM05D006197 ORTHO05D007718 1.7e-21 105.9 97 60.8
BcaB02g07441 Brassica carinata HOM05D006197 ORTHO05D007718 2.2e-21 105.5 65 76.9
Glyma.11G041000 Glycine max HOM05D006197 ORTHO05D007718 2.2e-21 105.5 64 76.6
BcaC07g40434 Brassica carinata HOM05D006197 ORTHO05D007718 2.8e-21 105.1 65 76.9
C06p26450 Brassica napus HOM05D006197 ORTHO05D007718 2.8e-21 105.1 65 76.9
Lj2g0021118 Lotus japonicus HOM05D006197 ORTHO05D007718 2.8e-21 105.1 63 79.4
MBI02_g29718_MAGBIO Magnolia biondii HOM05D000001 ORTHO05D009071 2.8e-21 105.1 64 76.6
arahy.Tifrunner.gnm1.ann1.M9L3KI Arachis hypogaea HOM05D006197 ORTHO05D007718 3.7e-21 104.8 63 74.6
arahy.Tifrunner.gnm1.ann1.PC0NS4 Arachis hypogaea HOM05D006197 ORTHO05D007718 3.7e-21 104.8 63 74.6
Eucgr.E00313 Eucalyptus grandis HOM05D006197 ORTHO05D007718 3.7e-21 104.8 64 76.6
Medtr5g013975 Medicago truncatula HOM05D006197 ORTHO05D007718 3.7e-21 104.8 64 78.1
CSS0031892 Camellia sinensis var. sinensis HOM05D006197 ORTHO05D007718 4.8e-21 104.4 81 67.9
CSS0033989 Camellia sinensis var. sinensis HOM05D006197 ORTHO05D007718 4.8e-21 104.4 81 67.9
CSS0037645 Camellia sinensis var. sinensis HOM05D006197 ORTHO05D007718 4.8e-21 104.4 81 67.9
Ca_24632_v3 Cicer arietinum L. HOM05D006197 ORTHO05D007718 4.8e-21 104.4 64 75.0
QL12p007107 Quercus lobata HOM05D006197 ORTHO05D007718 4.8e-21 104.4 84 63.1
TWI81G0993 Tripterygium wilfordii HOM05D006197 ORTHO05D007718 4.8e-21 104.4 63 77.8
MELO3C003373.2 Cucumis melo HOM05D006197 ORTHO05D007718 6.3e-21 104.0 62 79.0
MBI11_g07528_MAGBIO Magnolia biondii HOM05D006197 ORTHO05D007718 6.3e-21 104.0 63 77.8
HanXRQChr08g0234831 Helianthus annuus HOM05D006197 ORTHO05D007718 8.3e-21 103.6 64 81.2
Sed0004723 Sechium edule HOM05D006197 ORTHO05D007718 8.3e-21 103.6 63 76.2
PGR042G3581 Punica granatum HOM05D006197 ORTHO05D007718 1.1e-20 103.2 63 81.0
Cc08_g02050 Coffea canephora HOM05D006197 ORTHO05D007718 1.4e-20 102.8 63 79.4
Cc08_g01990 Coffea canephora HOM05D006197 ORTHO05D007718 1.8e-20 102.4 63 77.8
CsaV3_3G049530 Cucumis sativus L. HOM05D006197 ORTHO05D007718 1.8e-20 102.4 79 65.8
Aa31LG10G14080 Aethionema arabicum HOM05D006197 ORTHO05D007718 2.4e-20 102.1 84 61.9
ECA240G0414 Erigeron canadensis HOM05D006197 ORTHO05D007718 2.4e-20 102.1 63 79.4
Psat2g174760 Pisum sativum HOM05D006197 ORTHO05D007718 2.4e-20 102.1 64 75.0
Dinv25183 Davidia involucrata HOM05D002285 ORTHO05D009255 4.1e-20 101.3 63 77.8
Actinidia03393 Actinidia chinensis HOM05D004955 ORTHO05D005965 5.4e-20 100.9 65 73.8
Lalb_Chr09g0323941 Lupinus albus HOM05D006197 ORTHO05D007718 5.4e-20 100.9 63 77.8
Oeu014592.2 Olea europaea HOM05D006197 ORTHO05D007718 1.2e-19 99.8 64 73.4
unitig_747.g21291 Utricularia gibba HOM05D006197 ORTHO05D007718 1.6e-19 99.4 65 70.8
TAR624G0346 Trochodendron aralioides HOM05D006197 ORTHO05D007718 2.0e-19 99.0 61 80.3
TPR.G6747 Trifolium pratense HOM05D006197 ORTHO05D007718 7.7e-19 97.1 61 73.8
TWI15G0656 Tripterygium wilfordii HOM05D006197 ORTHO05D007718 1.7e-18 95.9 65 75.4
Oeu006551.1 Olea europaea HOM05D006197 ORTHO05D007718 2.2e-18 95.5 64 71.9
Phvul.002G003700 Phaseolus vulgaris HOM05D006197 ORTHO05D007718 2.9e-18 95.1 97 50.5
PSO210G4997 Papaver somniferum HOM05D006197 ORTHO05D007718 5.0e-18 94.4 61 75.4
PSO832G1675 Papaver somniferum HOM05D006197 ORTHO05D007718 5.0e-18 94.4 61 75.4
ATR1088G052 Amborella trichopoda HOM05D006197 ORTHO05D007718 6.5e-18 94.0 61 70.5
Aqoxy1G03814 Aquilegia oxysepala HOM05D006197 ORTHO05D007718 8.5e-18 93.6 61 73.8
Duzib084G1370 Durio zibethinus HOM05D006197 ORTHO05D007718 3.2e-17 91.7 66 69.7
Cc08_g01910 Coffea canephora HOM05D006197 ORTHO05D007718 6.1e-16 87.4 54 74.1
AagrBONN_evm.TU.Sc2ySwM_368.296 Anthoceros agrestis HOM05D006197 ORTHO05D007718 1.2e-14 83.2 81 60.5
CAN.G799.18 Capsicum annuum HOM05D006197 ORTHO05D007718 2.0e-14 82.4 55 72.7
Mapoly0127s0016 Marchantia polymorpha HOM05D006197 ORTHO05D007718 2.6e-14 82.0 57 63.2
Os05g0500450 Oryza sativa ssp. japonica HOM05D006197 ORTHO05D007718 3.4e-14 81.6 65 63.1
Eucgr.C01972 Eucalyptus grandis HOM05D006197 ORTHO05D007718 2.8e-13 78.6 61 60.7
CBR_g8168 Chara braunii HOM05D006197 ORTHO05D007718 1.8e-12 75.9 48 70.8
Pp3c14_9970 Physcomitrium patens HOM05D006197 ORTHO05D007718 1.8e-12 75.9 90 46.7
Mapoly0046s0110 Marchantia polymorpha HOM05D006197 ORTHO05D007718 5.4e-12 74.3 54 63.0
SMO119G0374 Selaginella moellendorffii HOM05D006197 ORTHO05D007718 1.7e-10 69.3 46 71.7
Nn1g08520 Nelumbo nucifera HOM05D006197 ORTHO05D007718 2.9e-10 68.6 87 49.4
Cc08_g01940 Coffea canephora HOM05D000011 ORTHO05D000157 1.2e-08 63.2 40 67.5
Migut.E01523 Erythranthe guttata HOM05D006197 ORTHO05D007718 2.1e-08 62.4 63 52.4
Migut.E01526 Erythranthe guttata HOM05D006197 ORTHO05D007718 2.8e-08 62.0 63 50.8


User provided reference genes

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