Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc01g0007740 Simmondsia chinensis HOM05D006624 ORTHO05D008209 3.4e-231 804.7 422 100.0
Dinv25186 Davidia involucrata HOM05D006624 ORTHO05D008209 2.9e-121 439.5 382 57.6
Hund14427 Selenicereus undatus HOM05D006624 ORTHO05D008209 4.8e-116 422.2 380 55.3
CiPaw.11G087800 Carya illinoinensis HOM05D006624 ORTHO05D008209 7.0e-115 418.3 398 54.0
TAR629G2579 Trochodendron aralioides HOM05D006624 ORTHO05D008209 8.5e-113 411.4 367 56.1
CSS0000809 Camellia sinensis var. sinensis HOM05D006624 ORTHO05D008209 4.2e-112 409.1 330 58.8
Actinidia31470 Actinidia chinensis HOM05D006624 ORTHO05D008209 1.2e-111 407.5 353 55.5
CSS0049781 Camellia sinensis var. sinensis HOM05D006624 ORTHO05D008209 2.1e-111 406.8 330 58.5
Rhsim07G0122500 Rhododendron simsii HOM05D006624 ORTHO05D008209 2.1e-111 406.8 322 59.6
Sabra01G0115200 Salix brachista HOM05D006624 ORTHO05D008209 3.6e-111 406.0 397 51.9
Actinidia10881 Actinidia chinensis HOM05D006624 ORTHO05D008209 1.0e-110 404.4 383 55.1
TWI15G0738 Tripterygium wilfordii HOM05D006624 ORTHO05D008209 2.3e-110 403.3 349 55.0
Ah.07g200030 Amaranthus hybridus HOM05D006624 ORTHO05D008209 1.1e-109 401.0 374 54.5
AUR62018767 Chenopodium quinoa HOM05D006624 ORTHO05D008209 5.7e-109 398.7 353 56.4
QL12p007008 Quercus lobata HOM05D006624 ORTHO05D008209 5.7e-109 398.7 367 52.9
AUR62007233 Chenopodium quinoa HOM05D006624 ORTHO05D008209 7.4e-109 398.3 354 56.2
Nitab4.5_0002055g0180 Nicotiana tabacum HOM05D006624 ORTHO05D008209 9.7e-109 397.9 389 51.9
Potri.001G146500 Populus trichocarpa HOM05D006624 ORTHO05D008209 9.7e-109 397.9 359 54.9
Ciclev10031769m.g Citrus clementina HOM05D006624 ORTHO05D008209 3.7e-108 396.0 362 53.3
Gorai.003G180000 Gossypium raimondii HOM05D006624 ORTHO05D008209 8.2e-108 394.8 364 54.4
Haze_08295 Corylus avellana HOM05D006624 ORTHO05D008209 1.1e-107 394.4 329 57.4
Nitab4.5_0004327g0020 Nicotiana tabacum HOM05D006624 ORTHO05D008209 1.4e-107 394.0 336 56.2
EL10Ac5g12192 Beta vulgaris HOM05D006624 ORTHO05D008209 2.6e-106 389.8 354 55.4
GSVIVG01013232001 Vitis vinifera HOM05D006624 ORTHO05D008209 3.5e-106 389.4 366 51.9
Gohir.A03G002600 Gossypium hirsutum HOM05D006624 ORTHO05D008209 2.9e-105 386.3 404 51.7
Duzib068G0530 Durio zibethinus HOM05D006624 ORTHO05D008209 6.5e-105 385.2 333 57.7
PGR042G3682 Punica granatum HOM05D006624 ORTHO05D008209 1.5e-104 384.0 358 53.9
MD06G1040000 Malus domestica HOM05D006624 ORTHO05D008209 1.2e-103 380.9 396 50.3
Prupe.5G046100 Prunus persica HOM05D006624 ORTHO05D008209 1.6e-103 380.6 394 51.5
COL.COLO4_17108 Corchorus olitorius HOM05D000087 ORTHO05D008209 3.6e-103 379.4 363 53.4
Aqoxy7G00644 Aquilegia oxysepala HOM05D006624 ORTHO05D008209 4.7e-103 379.0 340 54.7
vmacro14109 Vaccinium macrocarpon HOM05D006624 ORTHO05D008209 1.0e-102 377.9 442 46.4
PGSC0003DMG400024215 Solanum tuberosum HOM05D006624 ORTHO05D008209 5.2e-102 375.6 385 54.3
RcHm_v2.0_Chr7g0208351 Rosa chinensis HOM05D006624 ORTHO05D008209 1.7e-100 370.5 360 53.1
Solyc08g077250.4 Solanum lycopersicum HOM05D006624 ORTHO05D008209 1.7e-100 370.5 355 51.5
Manes.17G019300 Manihot esculenta HOM05D006624 ORTHO05D008209 4.8e-100 369.0 390 49.7
Cc08_g02070 Coffea canephora HOM05D006624 ORTHO05D008209 6.3e-100 368.6 388 50.8
Thecc.03G233800 Theobroma cacao HOM05D006624 ORTHO05D008209 1.8e-99 367.1 397 51.1
Eucgr.E00310 Eucalyptus grandis HOM05D006624 ORTHO05D008209 7.0e-99 365.2 373 50.4
CAN.G799.14 Capsicum annuum HOM05D006624 ORTHO05D008209 9.1e-99 364.8 384 50.5
Glyma.11G041200 Glycine max HOM05D006624 ORTHO05D008209 9.1e-99 364.8 359 50.1
QL12p007057 Quercus lobata HOM05D006624 ORTHO05D008209 1.2e-98 364.4 370 51.6
Sopen08g025830 Solanum pennellii HOM05D006624 ORTHO05D008209 2.0e-98 363.6 384 48.7
MSTRG.12153 Avicennia marina HOM05D006624 ORTHO05D008209 1.0e-97 361.3 329 55.6
Sed0020690 Sechium edule HOM05D006624 ORTHO05D008209 1.7e-97 360.5 366 48.9
Phvul.002G004700 Phaseolus vulgaris HOM05D006624 ORTHO05D008209 3.8e-97 359.4 359 49.0
CsaV3_3G049520 Cucumis sativus L. HOM05D006624 ORTHO05D008209 1.5e-96 357.5 378 48.9
Glyma.01G200900 Glycine max HOM05D006624 ORTHO05D008209 1.5e-96 357.5 357 50.1
HanXRQChr08g0227961 Helianthus annuus HOM05D006624 ORTHO05D008209 1.5e-96 357.5 333 51.1
Migut.N01377 Erythranthe guttata HOM05D006624 ORTHO05D008209 4.2e-96 355.9 330 52.4
Atru.chr6.1770 Acer truncatum HOM05D006624 ORTHO05D008209 1.2e-95 354.4 371 49.1
FvH4_5g21210 Fragaria vesca HOM05D006624 ORTHO05D008209 1.2e-95 354.4 358 52.2
Lj2g0021367 Lotus japonicus HOM05D006624 ORTHO05D008209 1.6e-95 354.0 361 49.3
THA.LOC104827742 Tarenaya hassleriana HOM05D006624 ORTHO05D008209 1.6e-95 354.0 334 51.5
Psat2g174640 Pisum sativum HOM05D006624 ORTHO05D008209 2.7e-95 353.2 352 50.9
TPR.G21431 Trifolium pratense HOM05D006624 ORTHO05D008209 4.7e-95 352.4 362 48.9
FAN04G0639 Fragaria x ananassa HOM05D006624 ORTHO05D008209 1.4e-94 350.9 358 51.7
FAN08G0242 Fragaria x ananassa HOM05D006624 ORTHO05D008209 2.3e-94 350.1 356 51.1
ECA233G2124 Erigeron canadensis HOM05D006624 ORTHO05D008209 4.0e-94 349.4 365 49.0
Gohir.D03G169701 Gossypium hirsutum HOM05D006624 ORTHO05D008209 8.8e-94 348.2 313 55.0
VMungo1215G2954 Vigna mungo HOM05D006624 ORTHO05D008209 5.7e-93 345.5 352 48.9
ClCG09G012360 Citrullus lanatus HOM05D006624 ORTHO05D008209 1.7e-92 344.0 367 46.9
Lalb_Chr16g0379211 Lupinus albus HOM05D006624 ORTHO05D008209 3.7e-92 342.8 362 48.3
Aa31LG9G6360 Aethionema arabicum HOM05D006624 ORTHO05D008209 4.8e-92 342.4 330 50.3
PSO339G2002 Papaver somniferum HOM05D006624 ORTHO05D008209 4.8e-92 342.4 379 48.8
Medtr5g014010 Medicago truncatula HOM05D006624 ORTHO05D008209 8.3e-92 341.7 352 47.4
SGA_v2.0_scaffold36G14316 Striga asiatica HOM05D006624 ORTHO05D008209 1.8e-91 340.5 341 50.4
BcaC06g31468 Brassica carinata HOM05D006624 ORTHO05D008209 4.1e-91 339.3 360 47.5
PSO565G0001 Papaver somniferum HOM05D006624 ORTHO05D008209 4.5e-90 335.9 379 49.1
arahy.Tifrunner.gnm1.ann1.A7V6P3 Arachis hypogaea HOM05D006624 ORTHO05D008209 1.7e-89 334.0 382 46.3
BcaC06g34373 Brassica carinata HOM05D006624 ORTHO05D008209 1.7e-89 334.0 360 46.9
BolC7t43526H Brassica oleracea HOM05D006624 ORTHO05D008209 2.3e-89 333.6 360 47.5
arahy.Tifrunner.gnm1.ann1.76B0S0 Arachis hypogaea HOM05D006624 ORTHO05D008209 1.1e-88 331.3 389 45.5
C07p29750 Brassica napus HOM05D006624 ORTHO05D008209 1.1e-88 331.3 360 46.7
A06p45890 Brassica napus HOM05D006624 ORTHO05D008209 3.6e-87 326.2 360 46.4
AL8G11790 Arabidopsis lyrata HOM05D006624 ORTHO05D008209 4.7e-87 325.9 377 47.5
BraA06t27456Z Brassica rapa HOM05D006624 ORTHO05D008209 4.7e-87 325.9 360 46.1
AT5G46560 Arabidopsis thaliana HOM05D006624 ORTHO05D008209 6.1e-87 325.5 393 45.5
Lsat_1_v5_gn_6_68241 Lactuca sativa HOM05D006624 ORTHO05D008209 2.3e-86 323.6 355 47.3
Carub.0008s0136 Capsella rubella HOM05D006624 ORTHO05D008209 1.2e-85 321.2 330 49.1
MELO3C003374.2 Cucumis melo HOM05D006624 ORTHO05D008209 3.4e-85 319.7 375 45.3
DCAR_031785 Daucus carota HOM05D006624 ORTHO05D008209 5.7e-85 318.9 373 46.4
FAN18G2886 Fragaria x ananassa HOM05D006624 ORTHO05D008209 6.3e-84 315.5 394 47.0
SalBow6G4456 Salvia bowleyana HOM05D006624 ORTHO05D008209 1.6e-74 284.3 464 36.9
Zm00001eb000170 Zea mays HOM05D006624 ORTHO05D008209 3.9e-73 279.6 327 42.8
CDE04G3153 Ceratophyllum demersum HOM05D006624 ORTHO05D008209 2.8e-71 273.5 306 45.4
Thhalv10000965m.g Eutrema salsugineum HOM05D006624 ORTHO05D008209 3.6e-71 273.1 318 43.4
ATR1101G009 Amborella trichopoda HOM05D006624 ORTHO05D008209 4.7e-71 272.7 312 44.9
MBI04_g31972_MAGBIO Magnolia biondii HOM05D006624 ORTHO05D008209 1.9e-67 260.8 413 38.5
QL12p007029 Quercus lobata HOM05D006624 ORTHO05D008209 1.2e-66 258.1 247 48.2
Cpa.g.sc6.412 Carica papaya HOM05D006624 ORTHO05D008209 3.3e-64 250.0 250 50.4
Lj2A246G27 Lonicera japonica HOM05D006624 ORTHO05D008209 3.3e-64 250.0 277 46.2
Mapoly0037s0054 Marchantia polymorpha HOM05D006624 ORTHO05D008209 2.3e-57 227.3 320 40.0
Peaxi162Scf00084g00925 Petunia axillaris HOM05D006624 ORTHO05D008209 3.0e-57 226.9 205 54.6
Gorai.001G276000 Gossypium raimondii HOM05D006624 ORTHO05D008209 4.3e-56 223.0 249 44.6
FAN13G3188 Fragaria x ananassa HOM05D006624 ORTHO05D008209 1.2e-55 221.5 193 57.0
SEGI_35168 Sequoiadendron giganteum HOM05D006624 ORTHO05D008209 1.2e-55 221.5 283 40.6
Hma1.2p1_3049F.1_g332130 Hydrangea macrophylla HOM05D006624 ORTHO05D008209 1.8e-54 217.6 299 41.5
Pp3c26_11390 Physcomitrium patens HOM05D006624 ORTHO05D008209 2.0e-53 214.2 317 37.2
Ca_24634_v3 Cicer arietinum L. HOM05D006624 ORTHO05D008209 2.2e-52 210.7 188 53.2
CARHR175020 Cardamine hirsuta HOM05D006624 ORTHO05D008209 4.6e-50 203.0 245 42.4
Gorai.004G193000 Gossypium raimondii HOM05D006624 ORTHO05D008209 6.0e-50 202.6 218 46.3
Hma1.2p1_0414F.1_g147760 Hydrangea macrophylla HOM05D006624 ORTHO05D008209 3.5e-42 176.8 162 52.5
SpUn0632_0010 Schrenkiella parvula HOM05D006624 ORTHO05D008209 3.1e-38 163.7 228 40.4
Gorai.013G102100 Gossypium raimondii HOM05D006624 ORTHO05D008209 1.9e-35 154.5 308 33.1
Hma1.2p1_3049F.1_g332131 Hydrangea macrophylla HOM05D006624 ORTHO05D008209 3.9e-33 146.7 102 71.6
CBR_g18557 Chara braunii HOM05D006624 ORTHO05D008209 3.3e-32 143.7 246 30.9
Peaxi162Scf00084g00918 Petunia axillaris HOM05D006624 ORTHO05D008209 1.2e-29 135.2 113 57.5
AagrBONN_evm.TU.Sc2ySwM_362.2673 Anthoceros agrestis HOM05D006624 ORTHO05D008209 3.0e-25 120.6 201 30.8
Duzib084G0908 Durio zibethinus HOM05D006624 ORTHO05D008209 3.0e-25 120.6 126 45.2
Gorai.004G213700 Gossypium raimondii HOM05D006624 ORTHO05D008209 8.2e-23 112.5 246 32.9
arahy.Tifrunner.gnm1.ann1.PE2WYP Arachis hypogaea HOM05D006624 ORTHO05D008209 2.6e-21 107.5 181 35.9
Gorai.001G079600 Gossypium raimondii HOM05D006624 ORTHO05D008209 3.3e-16 90.5 88 42.0
Gohir.D11G288800 Gossypium hirsutum HOM05D000724 ORTHO05D011687 7.4e-16 89.4 92 43.5
Gorai.007G312600 Gossypium raimondii HOM05D000724 ORTHO05D011687 9.7e-16 89.0 281 28.1
Gohir.D07G137300 Gossypium hirsutum HOM05D006624 ORTHO05D008209 1.2e-13 82.0 71 46.5
Gohir.D08G202450 Gossypium hirsutum HOM05D006624 ORTHO05D008209 3.4e-13 80.5 70 44.3
Os03g0100050 Oryza sativa ssp. japonica HOM05D006624 ORTHO05D008209 5.9e-13 79.7 98 41.8
arahy.Tifrunner.gnm1.ann1.HID3FF Arachis hypogaea HOM05D006624 ORTHO05D008209 1.1e-06 58.9 111 33.3
Gohir.D07G137350 Gossypium hirsutum HOM05D006624 ORTHO05D008209 2.4e-06 57.8 93 43.0
CBR_g30426 Chara braunii HOM05D006624 ORTHO05D008209 3.1e-06 57.4 46 58.7
Gohir.D08G202425 Gossypium hirsutum HOM05D006624 ORTHO05D008209 3.1e-06 57.4 93 43.0
Gohir.D11G288766 Gossypium hirsutum HOM05D006624 ORTHO05D008209 4.1e-06 57.0 93 43.0
Gohir.D07G075451 Gossypium hirsutum HOM05D006624 ORTHO05D008209 9.1e-06 55.8 93 41.9


User provided reference genes

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