Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc01g0007470 Simmondsia chinensis HOM05D004850 ORTHO05D005971 2.9e-268 927.9 448 100.0
CiPaw.11G092600 Carya illinoinensis HOM05D004850 ORTHO05D005971 2.9e-220 768.5 445 81.6
Peaxi162Scf00460g00615 Petunia axillaris HOM05D004850 ORTHO05D005971 6.5e-220 767.3 445 81.3
Haze_08241 Corylus avellana HOM05D004850 ORTHO05D005971 8.5e-220 766.9 445 81.6
Ah.12g054980 Amaranthus hybridus HOM05D004850 ORTHO05D005971 1.1e-219 766.5 444 81.8
Thecc.03G228700 Theobroma cacao HOM05D004850 ORTHO05D005971 3.2e-219 765.0 444 81.3
Solyc08g076990.3 Solanum lycopersicum HOM05D004850 ORTHO05D005971 7.2e-219 763.8 444 81.5
Cfa012428 Carpinus fangiana HOM05D004850 ORTHO05D005971 1.2e-218 763.1 460 79.3
AUR62018722 Chenopodium quinoa HOM05D004850 ORTHO05D005971 1.2e-218 763.1 445 80.9
CAN.G1381.2 Capsicum annuum HOM05D004850 ORTHO05D005971 1.6e-218 762.7 445 81.6
Nitab4.5_0001963g0010 Nicotiana tabacum HOM05D004850 ORTHO05D005971 2.1e-218 762.3 444 81.5
EL10Ac5g12130 Beta vulgaris HOM05D004850 ORTHO05D005971 6.1e-218 760.8 445 80.4
Sopen08g025570 Solanum pennellii HOM05D004850 ORTHO05D005971 6.1e-218 760.8 444 80.9
Potri.001G143200 Populus trichocarpa HOM05D004850 ORTHO05D005971 7.9e-218 760.4 442 81.4
Hma1.2p1_0991F.1_g245100 Hydrangea macrophylla HOM05D004850 ORTHO05D005971 1.0e-217 760.0 445 81.8
Glyma.11G043300 Glycine max HOM05D004850 ORTHO05D005971 3.0e-217 758.4 445 79.8
Lalb_Chr16g0379121 Lupinus albus HOM05D004850 ORTHO05D005971 3.9e-217 758.1 442 80.3
CSS0027944 Camellia sinensis var. sinensis HOM05D004850 ORTHO05D005971 6.7e-217 757.3 445 80.4
Actinidia03377 Actinidia chinensis HOM05D004850 ORTHO05D005971 8.8e-217 756.9 442 80.8
MD06G1033100 Malus domestica HOM05D004850 ORTHO05D005971 8.8e-217 756.9 445 79.8
TWI15G0149 Tripterygium wilfordii HOM05D004850 ORTHO05D005971 1.1e-216 756.5 444 80.4
ECA233G2661 Erigeron canadensis HOM05D004850 ORTHO05D005971 3.3e-216 755.0 444 80.6
Lsat_1_v5_gn_6_64460 Lactuca sativa HOM05D004850 ORTHO05D005971 3.3e-216 755.0 446 79.6
MSTRG.1982 Avicennia marina HOM05D004850 ORTHO05D005971 4.3e-216 754.6 445 80.0
C07p49180 Brassica napus HOM05D004850 ORTHO05D005971 7.4e-216 753.8 446 80.3
BolC7t45428H Brassica oleracea HOM05D004850 ORTHO05D005971 7.4e-216 753.8 446 80.3
THA.LOC104827763 Tarenaya hassleriana HOM05D004850 ORTHO05D005971 7.4e-216 753.8 444 80.0
CANSAT21G2632 Cannabis sativa HOM05D004850 ORTHO05D005971 9.7e-216 753.4 445 79.8
A03p50790 Brassica napus HOM05D004850 ORTHO05D005971 1.3e-215 753.1 446 80.0
Prupe.5G038300 Prunus persica HOM05D004850 ORTHO05D005971 1.3e-215 753.1 445 80.0
Thhalv10025214m.g Eutrema salsugineum HOM05D004850 ORTHO05D005971 2.2e-215 752.3 440 81.1
Ca_24651_v3 Cicer arietinum L. HOM05D004850 ORTHO05D005971 2.8e-215 751.9 448 79.5
Ciclev10031569m.g Citrus clementina HOM05D004850 ORTHO05D005971 6.3e-215 750.7 445 79.3
RcHm_v2.0_Chr7g0209441 Rosa chinensis HOM05D004850 ORTHO05D005971 8.2e-215 750.4 442 80.3
Manes.17G013000 Manihot esculenta HOM05D004850 ORTHO05D005971 1.1e-214 750.0 442 80.5
Dinv25211 Davidia involucrata HOM05D004850 ORTHO05D005971 1.8e-214 749.2 445 78.7
BraA03t14168Z Brassica rapa HOM05D004850 ORTHO05D005971 2.4e-214 748.8 446 79.6
Duzib205G2010 Durio zibethinus HOM05D004850 ORTHO05D005971 2.4e-214 748.8 444 79.3
Lj2g0005935 Lotus japonicus HOM05D004850 ORTHO05D005971 2.4e-214 748.8 445 79.1
VMungo1215G1005 Vigna mungo HOM05D004850 ORTHO05D005971 2.4e-214 748.8 439 80.0
FAN08G3086 Fragaria x ananassa HOM05D004850 ORTHO05D005971 4.1e-214 748.0 442 80.1
Phvul.002G007200 Phaseolus vulgaris HOM05D004850 ORTHO05D005971 4.1e-214 748.0 439 79.7
COL.COLO4_17049 Corchorus olitorius HOM05D004850 ORTHO05D005971 5.3e-214 747.7 444 79.7
Migut.E00931 Erythranthe guttata HOM05D004850 ORTHO05D005971 5.3e-214 747.7 445 79.3
Sp7g16280 Schrenkiella parvula HOM05D004850 ORTHO05D005971 5.3e-214 747.7 449 79.7
AL7G36700 Arabidopsis lyrata HOM05D004850 ORTHO05D005971 6.9e-214 747.3 438 80.8
A01p09880 Brassica napus HOM05D004850 ORTHO05D005971 6.9e-214 747.3 440 80.7
Duzib084G0351 Durio zibethinus HOM05D004850 ORTHO05D005971 6.9e-214 747.3 444 79.5
Eucgr.D02190 Eucalyptus grandis HOM05D004850 ORTHO05D005971 6.9e-214 747.3 445 79.8
Medtr5g014410 Medicago truncatula HOM05D004850 ORTHO05D005971 9.1e-214 746.9 440 79.5
BcaC09g51599 Brassica carinata HOM05D004850 ORTHO05D005971 1.5e-213 746.1 440 80.0
Gohir.D03G170933 Gossypium hirsutum HOM05D004850 ORTHO05D005971 2.0e-213 745.7 444 79.7
Carub.0007s2353 Capsella rubella HOM05D004850 ORTHO05D005971 2.6e-213 745.3 449 79.7
CARHR224550 Cardamine hirsuta HOM05D004850 ORTHO05D005971 2.6e-213 745.3 440 80.2
FAN13G0589 Fragaria x ananassa HOM05D004850 ORTHO05D005971 2.6e-213 745.3 442 79.6
unitig_21.g20382 Utricularia gibba HOM05D004850 ORTHO05D005971 2.6e-213 745.3 437 81.5
arahy.Tifrunner.gnm1.ann1.IM2DA2 Arachis hypogaea HOM05D004850 ORTHO05D005971 3.4e-213 745.0 442 79.4
arahy.Tifrunner.gnm1.ann1.Y05B39 Arachis hypogaea HOM05D004850 ORTHO05D005971 3.4e-213 745.0 442 79.4
Lalb_Chr05g0213951 Lupinus albus HOM05D004850 ORTHO05D005971 3.4e-213 745.0 445 77.8
Gohir.A03G001400 Gossypium hirsutum HOM05D004850 ORTHO05D005971 5.9e-213 744.2 444 79.5
Aa31LG6G570 Aethionema arabicum HOM05D004850 ORTHO05D005971 7.7e-213 743.8 440 80.9
Nn6g33598 Nelumbo nucifera HOM05D004850 ORTHO05D005971 1.7e-212 742.7 446 79.1
AT4G17830 Arabidopsis thaliana HOM05D004850 ORTHO05D005971 2.2e-212 742.3 449 78.8
FvH4_5g21890 Fragaria vesca HOM05D004850 ORTHO05D005971 2.2e-212 742.3 442 79.6
Potri.003G091100 Populus trichocarpa HOM05D004850 ORTHO05D005971 3.8e-212 741.5 444 79.7
FAN18G1246 Fragaria x ananassa HOM05D004850 ORTHO05D005971 6.5e-212 740.7 442 79.4
MD16G1275900 Malus domestica HOM05D004850 ORTHO05D005971 1.9e-211 739.2 445 78.7
HanXRQChr06g0178401 Helianthus annuus HOM05D004850 ORTHO05D005971 3.2e-211 738.4 445 77.3
Cpa.g.sc239.6 Carica papaya HOM05D004850 ORTHO05D005971 5.5e-211 737.6 444 78.8
BraA01t00932Z Brassica rapa HOM05D004850 ORTHO05D005971 7.2e-211 737.3 455 78.0
PGR031G0111 Punica granatum HOM05D004850 ORTHO05D005971 7.2e-211 737.3 445 77.8
Lj2A240G35 Lonicera japonica HOM05D004850 ORTHO05D005971 2.7e-210 735.3 500 71.0
TAR629G1238 Trochodendron aralioides HOM05D004850 ORTHO05D005971 3.6e-210 734.9 445 79.8
Psat2g173240 Pisum sativum HOM05D004850 ORTHO05D005971 4.7e-210 734.6 448 77.0
Sabra01G0111700 Salix brachista HOM05D004850 ORTHO05D005971 4.7e-210 734.6 480 74.0
Aqoxy3G02383 Aquilegia oxysepala HOM05D004850 ORTHO05D005971 2.4e-206 722.2 446 75.6
PSO063G6489 Papaver somniferum HOM05D004850 ORTHO05D005971 2.0e-205 719.2 446 75.8
Oeu006991.2 Olea europaea HOM05D004850 ORTHO05D005971 5.9e-205 717.6 516 69.0
CDE11G0367 Ceratophyllum demersum HOM05D004850 ORTHO05D005971 7.7e-205 717.2 447 75.2
HPP92_001721 Vanilla planifolia HOM05D004850 ORTHO05D005971 1.3e-204 716.5 444 75.7
HanXRQChr10g0285061 Helianthus annuus HOM05D004850 ORTHO05D005971 3.8e-204 714.9 442 76.0
Psat2g173320 Pisum sativum HOM05D004850 ORTHO05D005971 1.1e-203 713.4 445 76.0
ATR0049G003 Amborella trichopoda HOM05D004850 ORTHO05D005971 1.4e-203 713.0 444 76.6
SGA_v2.0_scaffold20G09279 Striga asiatica HOM05D004850 ORTHO05D005971 3.2e-203 711.8 520 68.7
Rhsim11G0014400 Rhododendron simsii HOM05D004850 ORTHO05D005971 2.1e-202 709.1 419 80.2
vmacro00333 Vaccinium macrocarpon HOM05D004850 ORTHO05D005971 1.4e-201 706.4 424 79.7
Sopen08g025550 Solanum pennellii HOM05D004850 ORTHO05D005971 1.7e-199 699.5 442 75.6
Gorai.003G181400 Gossypium raimondii HOM05D004850 ORTHO05D005971 1.1e-198 696.8 413 80.1
Sabra03G0060800 Salix brachista HOM05D004850 ORTHO05D005971 2.4e-198 695.7 411 80.3
Solyc08g076970.3 Solanum lycopersicum HOM05D004850 ORTHO05D005971 3.1e-198 695.3 442 74.9
Sopen08g025560 Solanum pennellii HOM05D004850 ORTHO05D005971 4.5e-197 691.4 442 74.9
PGSC0003DMG400017513 Solanum tuberosum HOM05D004850 ORTHO05D005971 2.5e-195 685.6 442 74.7
Solyc08g076980.4 Solanum lycopersicum HOM05D004850 ORTHO05D005971 2.7e-194 682.2 442 74.4
DCAR_031774 Daucus carota HOM05D004850 ORTHO05D005971 8.8e-193 677.2 414 77.3
Dinv28952 Davidia involucrata HOM05D004850 ORTHO05D005971 1.2e-192 676.8 401 80.3
SMO353G0234 Selaginella moellendorffii HOM05D004850 ORTHO05D005971 1.1e-187 660.2 437 72.1
MELO3C003400.2 Cucumis melo HOM05D004850 ORTHO05D005971 2.7e-186 655.6 444 70.0
AagrBONN_evm.TU.Sc2ySwM_117.1258 Anthoceros agrestis HOM05D004850 ORTHO05D005971 8.8e-185 650.6 437 72.3
Os02g0690800 Oryza sativa ssp. japonica HOM05D004850 ORTHO05D005971 1.2e-184 650.2 451 68.5
Pp3c6_20970 Physcomitrium patens HOM05D004850 ORTHO05D005971 4.5e-181 638.3 447 68.2
Zm00001eb251190 Zea mays HOM05D004850 ORTHO05D005971 5.0e-180 634.8 450 66.0
Sed0023890 Sechium edule HOM05D004850 ORTHO05D005971 2.5e-179 632.5 446 66.8
Nn1g00519 Nelumbo nucifera HOM05D004850 ORTHO05D005971 5.5e-179 631.3 447 70.7
Sed0011615 Sechium edule HOM05D004850 ORTHO05D005971 3.0e-177 625.5 445 66.1
ClCG09G012040 Citrullus lanatus HOM05D004850 ORTHO05D005971 9.8e-176 620.5 443 66.6
AUR62007282 Chenopodium quinoa HOM05D004850 ORTHO05D005971 1.7e-175 619.8 398 75.9
ClCG09G012030 Citrullus lanatus HOM05D004850 ORTHO05D005971 3.5e-173 612.1 443 65.5
Atru.chr6.1718 Acer truncatum HOM05D004850 ORTHO05D005971 3.6e-170 602.1 348 83.0
GSVIVG01013167001 Vitis vinifera HOM05D004850 ORTHO05D005971 2.3e-169 599.4 349 81.9
Cc00_g30170 Coffea canephora HOM05D004850 ORTHO05D005971 1.5e-168 596.7 350 80.6
Cc11_g03830 Coffea canephora HOM05D004850 ORTHO05D005971 1.4e-166 590.1 340 82.1
Mapoly0013s0175 Marchantia polymorpha HOM05D004850 ORTHO05D005971 9.2e-166 587.4 436 65.4
BolC1t01126H Brassica oleracea HOM05D004850 ORTHO05D005971 4.6e-165 585.1 365 77.8
Actinidia28173 Actinidia chinensis HOM05D004850 ORTHO05D005971 2.5e-163 579.3 449 66.4
CsaV3_3G049280 Cucumis sativus L. HOM05D004850 ORTHO05D005971 4.9e-159 565.1 448 60.5
CBR_g51240 Chara braunii HOM05D004850 ORTHO05D005971 1.1e-158 563.9 447 60.6
MELO3C003399.2 Cucumis melo HOM05D004850 ORTHO05D005971 3.2e-158 562.4 448 60.5
MELO3C003398.2 Cucumis melo HOM05D004850 ORTHO05D005971 8.6e-156 554.3 450 61.1
QL12p005631 Quercus lobata HOM05D004850 ORTHO05D005971 2.3e-153 546.2 291 86.9
Cre02.g105500 Chlamydomonas reinhardtii HOM05D004850 ORTHO05D005971 2.0e-152 543.1 437 58.1
CsaV3_3G049270 Cucumis sativus L. HOM05D004850 ORTHO05D005971 2.9e-143 512.7 348 70.4
SMO116G0259 Selaginella moellendorffii HOM05D004850 ORTHO05D005971 3.8e-143 512.3 445 57.5
ClCG09G012020 Citrullus lanatus HOM05D004850 ORTHO05D005971 3.2e-142 509.2 355 69.0
C01p11580 Brassica napus HOM05D004850 ORTHO05D005971 1.5e-136 490.3 392 64.0
MCO07G613 Micromonas commoda HOM05D004850 ORTHO05D005971 5.1e-124 448.7 444 50.9
Glyma.01G198600 Glycine max HOM05D004850 ORTHO05D005971 2.0e-112 410.2 244 78.7
Nitab4.5_0008181g0010 Nicotiana tabacum HOM05D004850 ORTHO05D005971 5.8e-112 408.7 224 85.7
MD06G1033200 Malus domestica HOM05D004850 ORTHO05D005971 6.0e-109 398.7 361 57.9
arahy.Tifrunner.gnm1.ann1.XXZT2J Arachis hypogaea HOM05D004850 ORTHO05D005971 4.4e-83 312.8 234 65.4
SHI07365 Sapria himalayana HOM05D004850 ORTHO05D005971 1.6e-80 304.3 189 73.5
Sc02g0006900 Simmondsia chinensis HOM05D004850 ORTHO05D005971 1.0e-79 301.6 153 95.4
Sc03g0003930 Simmondsia chinensis HOM05D004850 ORTHO05D005971 2.1e-77 293.9 187 77.0
HPP92_001566 Vanilla planifolia HOM05D004850 ORTHO05D005971 2.0e-67 260.8 197 67.5
Actinidia25960 Actinidia chinensis HOM05D004850 ORTHO05D005971 1.9e-62 244.2 235 58.3
Cc08_g02610 Coffea canephora HOM05D004850 ORTHO05D005971 8.9e-60 235.3 139 79.1
FAN04G0574 Fragaria x ananassa HOM05D004850 ORTHO05D005971 9.2e-57 225.3 132 81.1
Sc22g0003360 Simmondsia chinensis HOM05D004850 ORTHO05D005971 3.3e-54 216.9 124 85.5
SEGI_04366 Sequoiadendron giganteum HOM05D004850 ORTHO05D005971 4.0e-44 183.3 103 77.7
Sc22g0003350 Simmondsia chinensis HOM05D004850 ORTHO05D005971 2.4e-41 174.1 90 92.2
BcaNung00053 Brassica carinata HOM05D004850 ORTHO05D005971 2.7e-40 170.6 137 65.0
arahy.Tifrunner.gnm1.ann1.RD5L31 Arachis hypogaea HOM05D004850 ORTHO05D005971 1.2e-35 155.2 93 79.6
MD02G1199500 Malus domestica HOM05D004850 ORTHO05D048674 2.4e-33 147.5 204 41.2
SEGI_19032 Sequoiadendron giganteum HOM05D004850 ORTHO05D005971 6.0e-32 142.9 82 82.9
arahy.Tifrunner.gnm1.ann1.MBF31G Arachis hypogaea HOM05D004850 ORTHO05D005971 2.5e-30 137.5 176 44.9
SMO116G0465 Selaginella moellendorffii HOM05D004850 ORTHO05D005971 1.9e-25 121.3 258 35.3
Hma1.2p1_0090F.1_g045780 Hydrangea macrophylla HOM05D004850 ORTHO05D005971 2.1e-24 117.9 78 67.9
Cc06_g05830 Coffea canephora HOM05D004850 ORTHO05D005971 1.6e-21 108.2 62 83.9
MD15G1380000 Malus domestica HOM05D004850 ORTHO05D048674 2.8e-21 107.5 57 78.9
SHI07376 Sapria himalayana HOM05D004850 ORTHO05D005971 1.4e-20 105.1 71 63.4
SHI07370 Sapria himalayana HOM05D004850 ORTHO05D005971 9.3e-17 92.4 91 48.4
Lsat_1_v5_gn_9_53361 Lactuca sativa HOM05D003461 ORTHO05D004386 1.9e-14 84.7 96 49.0
Lsat_1_v5_gn_4_90040 Lactuca sativa HOM05D003461 ORTHO05D004386 3.6e-13 80.5 38 86.8
arahy.Tifrunner.gnm1.ann1.00HL0A Arachis hypogaea HOM05D004850 ORTHO05D004353 4.5e-11 73.6 132 37.9
Lsat_1_v5_gn_8_141060 Lactuca sativa HOM05D003461 ORTHO05D004386 1.1e-09 68.9 86 46.5
AUR62007284 Chenopodium quinoa HOM05D000077 ORTHO05D014281 3.0e-07 60.8 45 60.0
SMO353G0042 Selaginella moellendorffii HOM05D019014 ORTHO05D379427 1.5e-06 58.5 69 50.7


User provided reference genes

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