Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc01g0007420 Simmondsia chinensis HOM05D006292 ORTHO05D006110 1.1e-74 283.1 138 100.0
Sc07g0008700 Simmondsia chinensis HOM05D006292 ORTHO05D006110 4.3e-21 105.1 128 48.4
Prupe.5G036400 Prunus persica HOM05D006292 ORTHO05D006110 1.9e-16 89.7 134 43.3
MD16G1274300 Malus domestica HOM05D006292 ORTHO05D006110 4.1e-16 88.6 134 42.5
FAN13G0922 Fragaria x ananassa HOM05D006292 ORTHO05D006110 2.7e-15 85.9 133 42.9
FvH4_5g22090 Fragaria vesca HOM05D006292 ORTHO05D006110 7.8e-15 84.3 133 42.1
EL10Ac5g12118 Beta vulgaris HOM05D006292 ORTHO05D006110 6.6e-14 81.3 142 40.8
RcHm_v2.0_Chr7g0209741 Rosa chinensis HOM05D006292 ORTHO05D006110 8.6e-14 80.9 133 42.1
AUR62007293 Chenopodium quinoa HOM05D043215 ORTHO05D006110 1.1e-13 80.5 143 41.3
Gohir.A09G201400 Gossypium hirsutum HOM05D006292 ORTHO05D006110 4.3e-13 78.6 137 42.3
TWI81G0365 Tripterygium wilfordii HOM05D006292 ORTHO05D006110 9.5e-13 77.4 132 41.7
Gohir.D09G193100 Gossypium hirsutum HOM05D006292 ORTHO05D006110 4.7e-12 75.1 137 40.9
Ciclev10013401m.g Citrus clementina HOM05D006292 ORTHO05D006110 8.1e-12 74.3 132 38.6
TAR636G3028 Trochodendron aralioides HOM05D006292 ORTHO05D006110 1.1e-11 73.9 138 42.0
Manes.15G181600 Manihot esculenta HOM05D006292 ORTHO05D006110 1.4e-11 73.6 124 38.7
Gorai.006G216600 Gossypium raimondii HOM05D006292 ORTHO05D006110 1.8e-11 73.2 131 40.5
Nn1g08042 Nelumbo nucifera HOM05D006292 ORTHO05D006110 4.0e-11 72.0 94 50.0
Potri.003G092100 Populus trichocarpa HOM05D006292 ORTHO05D006110 5.2e-11 71.6 124 39.5
PGR031G2877 Punica granatum HOM05D006292 ORTHO05D006110 5.2e-11 71.6 147 35.4
COL.COLO4_17031 Corchorus olitorius HOM05D006292 ORTHO05D006110 6.8e-11 71.2 137 41.6
TWI60G0215 Tripterygium wilfordii HOM05D006292 ORTHO05D006110 6.8e-11 71.2 136 39.0
Cpa.g.sc1778.1 Carica papaya HOM05D006292 ORTHO05D006110 2.0e-10 69.7 134 37.3
Lalb_Chr16g0381361 Lupinus albus HOM05D006292 ORTHO05D006110 3.4e-10 68.9 136 39.0
CARHR174730 Cardamine hirsuta HOM05D011808 ORTHO05D006110 5.8e-10 68.2 126 38.1
Duzib068G0707 Durio zibethinus HOM05D006292 ORTHO05D006110 5.8e-10 68.2 128 39.8
FAN04G1003 Fragaria x ananassa HOM05D006292 ORTHO05D006110 5.8e-10 68.2 83 49.4
FAN08G0524 Fragaria x ananassa HOM05D006292 ORTHO05D006110 5.8e-10 68.2 83 49.4
FAN18G1495 Fragaria x ananassa HOM05D006292 ORTHO05D006110 5.8e-10 68.2 83 49.4
Thecc.03G227700 Theobroma cacao HOM05D006292 ORTHO05D006110 7.5e-10 67.8 138 35.5
Sed0015746 Sechium edule HOM05D006292 ORTHO05D006110 9.8e-10 67.4 127 41.7
Dinv25216 Davidia involucrata HOM05D000567 ORTHO05D000767 1.3e-09 67.0 84 50.0
Potri.001G142250 Populus trichocarpa HOM05D006292 ORTHO05D006110 1.3e-09 67.0 122 36.9
Thhalv10001070m.g Eutrema salsugineum HOM05D011808 ORTHO05D006110 4.9e-09 65.1 136 39.0
MELO3C003411.2 Cucumis melo HOM05D011808 ORTHO05D006110 6.4e-09 64.7 134 38.1
Glyma.07G112800 Glycine max HOM05D006292 ORTHO05D006110 6.4e-09 64.7 132 38.6
Lj2g0014920 Lotus japonicus HOM05D006292 ORTHO05D006110 6.4e-09 64.7 135 37.0
Ah.07g200350 Amaranthus hybridus HOM05D006292 ORTHO05D006110 8.3e-09 64.3 140 37.9
Eucgr.D02199 Eucalyptus grandis HOM05D006292 ORTHO05D006110 1.1e-08 63.9 142 36.6
Medtr5g030470 Medicago truncatula HOM05D006292 ORTHO05D006110 1.1e-08 63.9 136 36.0
BcaC03g16885 Brassica carinata HOM05D011808 ORTHO05D006110 1.9e-08 63.2 127 37.0
C02p47820 Brassica napus HOM05D011808 ORTHO05D006110 1.9e-08 63.2 127 37.0
BolC2t10817H Brassica oleracea HOM05D011808 ORTHO05D006110 1.9e-08 63.2 127 37.0
CARHR129380 Cardamine hirsuta HOM05D006292 ORTHO05D006110 3.2e-08 62.4 128 35.2
Aqoxy3G02346 Aquilegia oxysepala HOM05D006292 ORTHO05D006110 4.1e-08 62.0 127 34.6
A02p30310 Brassica napus HOM05D011808 ORTHO05D006110 7.1e-08 61.2 125 36.0
BraA02t08046Z Brassica rapa HOM05D011808 ORTHO05D006110 7.1e-08 61.2 125 36.0
AL8G11570 Arabidopsis lyrata HOM05D011808 ORTHO05D006110 9.2e-08 60.8 134 34.3
Carub.0008s0115 Capsella rubella HOM05D011808 ORTHO05D006110 9.2e-08 60.8 135 36.3
Peaxi162Scf00460g00032 Petunia axillaris HOM05D006292 ORTHO05D006110 9.2e-08 60.8 122 36.9
CiPaw.12G063900 Carya illinoinensis HOM05D006292 ORTHO05D006110 1.2e-07 60.5 122 37.7
Peaxi162Scf00045g00010 Petunia axillaris HOM05D006292 ORTHO05D006110 1.2e-07 60.5 124 37.1
Cc08_g02780 Coffea canephora HOM05D006292 ORTHO05D006110 1.6e-07 60.1 124 36.3
Duzib205G0138 Durio zibethinus HOM05D006292 ORTHO05D006110 1.6e-07 60.1 143 36.4
Lalb_Chr09g0325661 Lupinus albus HOM05D006292 ORTHO05D006110 1.6e-07 60.1 129 35.7
Sed0013806 Sechium edule HOM05D011808 ORTHO05D006110 1.6e-07 60.1 120 35.0
Sp4g17440 Schrenkiella parvula HOM05D006292 ORTHO05D006110 2.1e-07 59.7 128 35.9
AT2G35215 Arabidopsis thaliana HOM05D006292 ORTHO05D006110 3.5e-07 58.9 128 34.4
CSS0029921 Camellia sinensis var. sinensis HOM05D006292 ORTHO05D006110 3.5e-07 58.9 126 34.9
CSS0047178 Camellia sinensis var. sinensis HOM05D006292 ORTHO05D006110 3.5e-07 58.9 126 34.9
Rhsim07G0127000 Rhododendron simsii HOM05D006292 ORTHO05D006110 3.5e-07 58.9 131 39.7
PGSC0003DMG400001160 Solanum tuberosum HOM05D006292 ORTHO05D006110 3.5e-07 58.9 128 35.2
AT5G46770 Arabidopsis thaliana HOM05D011808 ORTHO05D006110 4.6e-07 58.5 134 34.3
CANSAT21G1416 Cannabis sativa HOM05D006292 ORTHO05D006110 4.6e-07 58.5 131 37.4
Atru.chr6.1708 Acer truncatum HOM05D006292 ORTHO05D006110 6.0e-07 58.2 119 37.8
Carub.0004s1692 Capsella rubella HOM05D006292 ORTHO05D006110 7.8e-07 57.8 128 35.2
Hma1.2p1_1063F.1_g253570 Hydrangea macrophylla HOM05D006292 ORTHO05D006110 7.8e-07 57.8 123 38.2
CSS0025259 Camellia sinensis var. sinensis HOM05D006292 ORTHO05D006110 1.0e-06 57.4 128 35.2
Hma1.2p1_2704F.1_g327130 Hydrangea macrophylla HOM05D006292 ORTHO05D006110 1.0e-06 57.4 123 38.2
BcaC02g07728 Brassica carinata HOM05D006292 ORTHO05D006110 1.3e-06 57.0 128 32.0
BolC4t27900H Brassica oleracea HOM05D006292 ORTHO05D006110 1.3e-06 57.0 128 32.0
CsaV3_3G001720 Cucumis sativus L. HOM05D006292 ORTHO05D006110 1.3e-06 57.0 124 37.1
Oeu017028.1 Olea europaea HOM05D006292 ORTHO05D006110 1.3e-06 57.0 97 42.3
A04p26770 Brassica napus HOM05D006292 ORTHO05D006110 1.7e-06 56.6 128 32.0
C04p64170 Brassica napus HOM05D006292 ORTHO05D006110 1.7e-06 56.6 128 32.0
BraA04t18181Z Brassica rapa HOM05D006292 ORTHO05D006110 1.7e-06 56.6 128 32.0
CsaV3_3G049160 Cucumis sativus L. HOM05D006292 ORTHO05D006110 1.7e-06 56.6 137 36.5
Lalb_Chr05g0216081 Lupinus albus HOM05D006292 ORTHO05D006110 1.7e-06 56.6 136 37.5
Rhsim11G0014800 Rhododendron simsii HOM05D006292 ORTHO05D006110 1.7e-06 56.6 122 37.7
ClCG10G001600 Citrullus lanatus HOM05D006292 ORTHO05D006110 2.3e-06 56.2 133 34.6
Glyma.09G204400 Glycine max HOM05D006292 ORTHO05D006110 2.3e-06 56.2 133 36.8
Phvul.002G141600 Phaseolus vulgaris HOM05D006292 ORTHO05D006110 3.0e-06 55.8 130 36.2
Solyc08g005040.1 Solanum lycopersicum HOM05D006292 ORTHO05D006110 3.0e-06 55.8 133 33.1
Solyc08g076940.1 Solanum lycopersicum HOM05D006292 ORTHO05D006110 3.0e-06 55.8 129 33.3
AL4G31240 Arabidopsis lyrata HOM05D006292 ORTHO05D006110 3.9e-06 55.5 128 32.0
Glyma.03G113900 Glycine max HOM05D006292 ORTHO05D006110 3.9e-06 55.5 133 35.3
Sopen08g001060 Solanum pennellii HOM05D006292 ORTHO05D006110 3.9e-06 55.5 128 33.6
Sopen08g025520 Solanum pennellii HOM05D006292 ORTHO05D006110 3.9e-06 55.5 129 33.3
MELO3C013852.2 Cucumis melo HOM05D006292 ORTHO05D006110 5.1e-06 55.1 129 36.4
Thhalv10017673m.g Eutrema salsugineum HOM05D006292 ORTHO05D006110 5.1e-06 55.1 130 33.8
Gohir.A03G000800 Gossypium hirsutum HOM05D006292 ORTHO05D006110 5.1e-06 55.1 137 32.8
Gohir.A12G208300 Gossypium hirsutum HOM05D006292 ORTHO05D006110 5.1e-06 55.1 130 34.6
TPR.G3912 Trifolium pratense HOM05D006292 ORTHO05D006110 5.1e-06 55.1 124 36.3
Gohir.D12G210900 Gossypium hirsutum HOM05D006292 ORTHO05D006110 6.6e-06 54.7 130 35.4
Gorai.008G226400 Gossypium raimondii HOM05D006292 ORTHO05D006110 6.6e-06 54.7 130 35.4


User provided reference genes

Program Settings