Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc01g0007370 Simmondsia chinensis HOM05D004949 ORTHO05D006006 9.5e-262 906.4 477 100.0
Eucgr.E00272 Eucalyptus grandis HOM05D004949 ORTHO05D006006 2.3e-154 549.7 476 62.8
TAR375G0033 Trochodendron aralioides HOM05D004949 ORTHO05D006006 3.9e-154 548.9 474 62.0
Prupe.5G033200 Prunus persica HOM05D004949 ORTHO05D006006 4.0e-151 538.9 468 60.9
Cfa012457 Carpinus fangiana HOM05D004949 ORTHO05D006006 5.8e-150 535.0 472 60.2
GSVIVG01013143001 Vitis vinifera HOM05D004949 ORTHO05D006006 4.1e-148 528.9 481 58.2
Nn1g00131 Nelumbo nucifera HOM05D004949 ORTHO05D006006 4.6e-147 525.4 474 58.6
Actinidia25973 Actinidia chinensis HOM05D004949 ORTHO05D006006 7.8e-147 524.6 468 60.7
RcHm_v2.0_Chr7g0210111 Rosa chinensis HOM05D004949 ORTHO05D006006 1.0e-146 524.2 470 57.7
Rhsim11G0048300 Rhododendron simsii HOM05D004949 ORTHO05D006006 3.0e-146 522.7 470 59.6
PGR042G3443 Punica granatum HOM05D004949 ORTHO05D006006 6.6e-146 521.5 470 58.7
COL.COLO4_17003 Corchorus olitorius HOM05D004949 ORTHO05D006006 1.9e-145 520.0 473 59.4
Hma1.2p1_0120F.1_g057130 Hydrangea macrophylla HOM05D004949 ORTHO05D006006 2.5e-145 519.6 459 60.1
Atru.chr6.1656 Acer truncatum HOM05D004949 ORTHO05D006006 1.6e-144 516.9 470 60.4
PSO782G4101 Papaver somniferum HOM05D004949 ORTHO05D006006 3.4e-142 509.2 471 58.0
Manes.17G017708 Manihot esculenta HOM05D004949 ORTHO05D006006 4.4e-142 508.8 470 57.7
CANSAT21G1226 Cannabis sativa HOM05D004949 ORTHO05D006006 9.8e-142 507.7 464 59.7
Duzib068G0117 Durio zibethinus HOM05D004949 ORTHO05D006006 9.8e-142 507.7 457 60.6
Phvul.003G284400 Phaseolus vulgaris HOM05D004949 ORTHO05D006006 9.8e-142 507.7 466 57.3
EL10Ac5g12089 Beta vulgaris HOM05D004949 ORTHO05D006006 1.3e-141 507.3 474 59.9
Potri.003G093300 Populus trichocarpa HOM05D004949 ORTHO05D006006 1.7e-141 506.9 467 58.5
PSO063G1669 Papaver somniferum HOM05D004949 ORTHO05D006006 2.9e-141 506.1 471 58.0
Aqoxy3G00659 Aquilegia oxysepala HOM05D004949 ORTHO05D006006 6.4e-141 505.0 481 58.8
Aqoxy3G01363 Aquilegia oxysepala HOM05D004949 ORTHO05D006006 1.4e-140 503.8 481 58.8
TWI15G0747 Tripterygium wilfordii HOM05D004949 ORTHO05D006006 1.4e-140 503.8 463 60.0
FvH4_5g22370 Fragaria vesca HOM05D004949 ORTHO05D006006 4.1e-140 502.3 470 55.5
FAN18G3647 Fragaria x ananassa HOM05D004949 ORTHO05D006006 4.1e-140 502.3 473 55.2
Lj4g0000928 Lotus japonicus HOM05D004949 ORTHO05D006006 9.2e-140 501.1 466 57.7
FAN13G2248 Fragaria x ananassa HOM05D004949 ORTHO05D006006 1.6e-139 500.4 468 55.8
CSS0006782 Camellia sinensis var. sinensis HOM05D004949 ORTHO05D006006 2.7e-139 499.6 455 60.9
arahy.Tifrunner.gnm1.ann1.78T75P Arachis hypogaea HOM05D004949 ORTHO05D006006 1.1e-137 494.2 465 56.1
Ciclev10031452m.g Citrus clementina HOM05D004949 ORTHO05D006006 1.5e-137 493.8 466 56.4
Lalb_Chr05g0228811 Lupinus albus HOM05D004949 ORTHO05D006006 2.5e-137 493.0 459 55.1
Cc08_g02960 Coffea canephora HOM05D004949 ORTHO05D006006 2.1e-136 490.0 470 57.4
VMungo1309G0709 Vigna mungo HOM05D004949 ORTHO05D006006 6.2e-136 488.4 453 56.7
HanXRQChr02g0049971 Helianthus annuus HOM05D004949 ORTHO05D006006 4.0e-135 485.7 471 55.4
CsaV3_3G001560 Cucumis sativus L. HOM05D004949 ORTHO05D006006 1.2e-134 484.2 469 56.7
ECA233G0790 Erigeron canadensis HOM05D004949 ORTHO05D006006 5.8e-134 481.9 476 54.4
CSS0020726 Camellia sinensis var. sinensis HOM05D004949 ORTHO05D006006 2.9e-133 479.6 437 61.1
FAN18G2708 Fragaria x ananassa HOM05D004949 ORTHO05D006006 3.8e-133 479.2 466 54.1
Aa31LG6G660 Aethionema arabicum HOM05D004949 ORTHO05D006006 3.2e-132 476.1 464 56.2
CAN.G298.24 Capsicum annuum HOM05D004949 ORTHO05D006006 4.1e-132 475.7 472 55.3
BcaB01g03270 Brassica carinata HOM05D004949 ORTHO05D006006 7.1e-132 474.9 465 53.8
Lsat_1_v5_gn_6_4100 Lactuca sativa HOM05D004949 ORTHO05D006006 1.2e-131 474.2 476 54.8
Medtr8g066760 Medicago truncatula HOM05D004949 ORTHO05D006006 2.1e-131 473.4 465 55.3
Os03g0378200 Oryza sativa ssp. japonica HOM05D004949 ORTHO05D006006 2.1e-131 473.4 462 55.2
A03p25190 Brassica napus HOM05D004949 ORTHO05D006006 3.5e-131 472.6 466 54.9
Carub.0007s2343 Capsella rubella HOM05D004949 ORTHO05D006006 3.5e-131 472.6 474 54.9
Gohir.A03G000052 Gossypium hirsutum HOM05D004949 ORTHO05D006006 4.6e-131 472.2 477 55.1
Zm00001eb018410 Zea mays HOM05D004949 ORTHO05D006006 7.8e-131 471.5 466 54.7
ATR0665G211 Amborella trichopoda HOM05D004949 ORTHO05D006006 1.0e-130 471.1 476 56.3
BcaC01g05139 Brassica carinata HOM05D004949 ORTHO05D006006 1.3e-130 470.7 465 54.4
BolC3t15350H Brassica oleracea HOM05D004949 ORTHO05D006006 1.3e-130 470.7 465 54.4
Thhalv10001430m.g Eutrema salsugineum HOM05D004949 ORTHO05D006006 1.3e-130 470.7 467 55.5
Solyc08g076810.4 Solanum lycopersicum HOM05D004949 ORTHO05D006006 2.3e-130 469.9 473 55.0
BraA03t11719Z Brassica rapa HOM05D004949 ORTHO05D006006 5.1e-130 468.8 466 54.3
Gorai.003G183400 Gossypium raimondii HOM05D004949 ORTHO05D006006 5.1e-130 468.8 477 54.5
C03p30030 Brassica napus HOM05D004949 ORTHO05D006006 8.6e-130 468.0 465 54.0
AL7G36600 Arabidopsis lyrata HOM05D004949 ORTHO05D006006 1.1e-129 467.6 475 54.9
CARHR224640 Cardamine hirsuta HOM05D004949 ORTHO05D006006 1.1e-129 467.6 470 54.9
Sopen08g025330 Solanum pennellii HOM05D004949 ORTHO05D006006 1.1e-129 467.6 473 55.0
Haze_08210 Corylus avellana HOM05D004949 ORTHO05D006006 2.1e-128 463.4 472 55.1
Sabra03G0062700 Salix brachista HOM05D004949 ORTHO05D006006 6.2e-128 461.8 411 59.9
Sed0027872 Sechium edule HOM05D004949 ORTHO05D006006 1.2e-126 457.6 473 54.8
Dinv28969 Davidia involucrata HOM05D004949 ORTHO05D006006 7.6e-126 454.9 378 62.7
VMungo0251G0718 Vigna mungo HOM05D004949 ORTHO05D006006 9.9e-126 454.5 430 56.5
QL12p004876 Quercus lobata HOM05D004949 ORTHO05D006006 9.3e-124 448.0 693 40.8
Nitab4.5_0002773g0060 Nicotiana tabacum HOM05D004949 ORTHO05D006006 7.3e-121 438.3 464 52.8
Psat4g121520 Pisum sativum HOM05D004949 ORTHO05D006006 7.3e-121 438.3 379 60.7
SalBow6G3319 Salvia bowleyana HOM05D004949 ORTHO05D006006 2.1e-120 436.8 503 50.7
CiPaw.12G064900 Carya illinoinensis HOM05D004949 ORTHO05D006006 4.8e-120 435.6 472 52.5
FAN04G2495 Fragaria x ananassa HOM05D004949 ORTHO05D006006 1.2e-118 431.0 550 45.6
AT4G17910 Arabidopsis thaliana HOM05D004949 ORTHO05D006006 5.8e-118 428.7 444 54.5
AUR62018700 Chenopodium quinoa HOM05D004949 ORTHO05D006006 1.7e-117 427.2 469 52.5
arahy.Tifrunner.gnm1.ann1.M3M86A Arachis hypogaea HOM05D004949 ORTHO05D006006 2.9e-117 426.4 465 50.8
SalBow8G0555 Salvia bowleyana HOM05D004949 ORTHO05D006006 1.4e-116 424.1 464 52.4
Glyma.08G270900 Glycine max HOM05D004949 ORTHO05D006006 1.9e-116 423.7 384 58.9
Zm00001eb392220 Zea mays HOM05D004949 ORTHO05D006006 4.2e-116 422.5 394 56.9
THA.LOC104812834 Tarenaya hassleriana HOM05D004949 ORTHO05D006006 6.0e-115 418.7 399 55.9
Nitab4.5_0005651g0010 Nicotiana tabacum HOM05D004949 ORTHO05D006006 2.4e-111 406.8 430 52.3
SEGI_29978 Sequoiadendron giganteum HOM05D004949 ORTHO05D006006 2.4e-111 406.8 479 48.9
MSTRG.7638 Avicennia marina HOM05D004949 ORTHO05D006006 1.7e-109 400.6 321 64.8
Sp4g27350 Schrenkiella parvula HOM05D004949 ORTHO05D006006 2.9e-109 399.8 435 50.6
vmacro00318 Vaccinium macrocarpon HOM05D004949 ORTHO05D006006 4.9e-109 399.1 536 47.6
CDE06G2155 Ceratophyllum demersum HOM05D004949 ORTHO05D006006 1.4e-108 397.5 324 63.9
Oeu048371.1 Olea europaea HOM05D004949 ORTHO05D006006 1.9e-108 397.1 396 54.5
HPP92_016910 Vanilla planifolia HOM05D004949 ORTHO05D006006 3.8e-101 372.9 355 56.6
TPR.G3324 Trifolium pratense HOM05D004949 ORTHO05D006006 8.4e-101 371.7 292 62.3
Peaxi162Scf00236g00034 Petunia axillaris HOM05D004949 ORTHO05D006006 1.1e-100 371.3 411 51.3
Mapoly0029s0019 Marchantia polymorpha HOM05D004949 ORTHO05D006006 1.4e-100 370.9 491 45.0
Thecc.03G225400 Theobroma cacao HOM05D004949 ORTHO05D006006 1.4e-100 370.9 388 53.1
unitig_0.g2339 Utricularia gibba HOM05D004949 ORTHO05D006006 4.6e-99 365.9 423 50.4
Pp3c15_10960 Physcomitrium patens HOM05D004949 ORTHO05D006006 3.9e-98 362.8 481 45.3
DCAR_008253 Daucus carota HOM05D004949 ORTHO05D006006 3.3e-97 359.8 410 49.8
MD00G1071700 Malus domestica HOM05D004949 ORTHO05D006006 1.1e-92 344.7 374 51.3
PGSC0003DMG400017541 Solanum tuberosum HOM05D004949 ORTHO05D006006 1.4e-92 344.4 291 60.5
MELO3C013842.2 Cucumis melo HOM05D004949 ORTHO05D006006 1.6e-91 340.9 509 46.0
MD06G1036000 Malus domestica HOM05D004949 ORTHO05D006006 2.1e-91 340.5 285 60.4
DCAR_028920 Daucus carota HOM05D004949 ORTHO05D006006 1.3e-88 331.3 295 58.6
SMO351G0610 Selaginella moellendorffii HOM05D004949 ORTHO05D006006 2.8e-88 330.1 481 44.1
Ca_14051_v3 Cicer arietinum L. HOM05D004949 ORTHO05D006006 1.8e-87 327.4 359 49.9
AagrBONN_evm.TU.Sc2ySwM_368.549 Anthoceros agrestis HOM05D004949 ORTHO05D006006 6.7e-82 308.9 483 42.4
Migut.L01003 Erythranthe guttata HOM05D004949 ORTHO05D006006 8.8e-82 308.5 254 62.6
SHI07305 Sapria himalayana HOM05D004949 ORTHO05D006006 2.6e-81 307.0 345 50.7
Ah.12g055170 Amaranthus hybridus HOM05D004949 ORTHO05D006006 3.3e-81 306.6 521 40.7
Nitab4.5_0000711g0030 Nicotiana tabacum HOM05D004949 ORTHO05D006006 1.3e-80 304.7 264 59.5
Gohir.D03G172700 Gossypium hirsutum HOM05D004949 ORTHO05D006006 2.8e-80 303.5 312 54.2
SGA_v2.0_scaffold38G15014 Striga asiatica HOM05D004949 ORTHO05D006006 4.8e-72 276.2 382 44.2
Medtr1g100910 Medicago truncatula HOM05D004949 ORTHO05D006006 6.3e-72 275.8 230 60.4
CBR_g46224 Chara braunii HOM05D004949 ORTHO05D006006 7.7e-70 268.9 449 39.4
Hund11225 Selenicereus undatus HOM05D004949 ORTHO05D006006 1.5e-68 264.6 296 51.0
Migut.O00927 Erythranthe guttata HOM05D004949 ORTHO05D006006 1.9e-68 264.2 317 50.2
Aa31LG2G21460 Aethionema arabicum HOM05D004949 ORTHO05D006006 2.7e-67 260.4 169 72.8
Lj8A304G48 Lonicera japonica HOM05D004949 ORTHO05D006006 3.6e-67 260.0 241 55.2
Gohir.A09G031300 Gossypium hirsutum HOM05D004949 ORTHO05D006006 4.1e-55 219.9 308 44.8
MBI04_g33883_MAGBIO Magnolia biondii HOM05D004949 ORTHO05D006006 3.5e-46 190.3 211 54.5
Rhsim11G0016800 Rhododendron simsii HOM05D004949 ORTHO05D006006 5.7e-41 172.9 311 38.6
MBI04_g33882_MAGBIO Magnolia biondii HOM05D004949 ORTHO05D006006 7.5e-41 172.6 106 75.5
MD06G1036200 Malus domestica HOM05D004949 ORTHO05D006006 3.3e-36 157.1 180 51.7
PGSC0003DMG400017507 Solanum tuberosum HOM05D004949 ORTHO05D006006 7.3e-36 156.0 159 51.6
Cre13.g587200 Chlamydomonas reinhardtii HOM05D004949 ORTHO05D006006 9.5e-36 155.6 584 28.1
Nitab4.5_0000711g0040 Nicotiana tabacum HOM05D004949 ORTHO05D006006 1.2e-30 138.7 155 49.0
Cfa022893 Carpinus fangiana HOM05D004949 ORTHO05D006006 8.6e-29 132.5 573 27.7
Gohir.A06G130506 Gossypium hirsutum HOM05D004949 ORTHO05D006006 2.3e-26 124.4 168 45.2
PRCOL_00001577 Prasinoderma coloniale HOM05D004949 ORTHO05D006006 3.4e-25 120.6 365 29.0
Nitab4.5_0003568g0040 Nicotiana tabacum HOM05D004949 ORTHO05D006006 1.3e-21 108.6 155 42.6
Psat7g200760 Pisum sativum HOM05D004949 ORTHO05D006006 2.8e-19 100.9 117 49.6
Glyma.01G095566 Glycine max HOM05D004949 ORTHO05D006006 1.1e-18 99.0 126 42.1
Gohir.A01G164900 Gossypium hirsutum HOM05D004949 ORTHO05D006006 5.8e-17 93.2 75 61.3
Gohir.A04G065628 Gossypium hirsutum HOM05D004949 ORTHO05D006006 5.8e-17 93.2 75 61.3
Gohir.A05G283800 Gossypium hirsutum HOM05D004949 ORTHO05D006006 1.3e-16 92.0 75 60.0
Cpa.g.sc34.32 Carica papaya HOM05D004949 ORTHO05D006006 2.2e-16 91.3 83 56.6
Migut.L01002 Erythranthe guttata HOM05D004949 ORTHO05D006006 2.9e-16 90.9 69 65.2
Gohir.A03G116100 Gossypium hirsutum HOM05D004949 ORTHO05D006006 1.1e-15 89.0 75 60.0
TPR.G3338 Trifolium pratense HOM05D004949 ORTHO05D006006 3.2e-15 87.4 145 42.1
AUR62007303 Chenopodium quinoa HOM05D004949 ORTHO05D006006 6.0e-14 83.2 180 35.0
MSTRG.865 Avicennia marina HOM05D004949 ORTHO05D006006 1.0e-13 82.4 125 40.0
TPR.G40857 Trifolium pratense HOM05D004949 ORTHO05D006006 6.2e-11 73.2 81 55.6
ClCG10G001480 Citrullus lanatus HOM05D004949 ORTHO05D006006 8.1e-11 72.8 112 41.1
Lj8A304G49 Lonicera japonica HOM05D004949 ORTHO05D006006 4.4e-09 67.0 83 43.4
TPR.G39375 Trifolium pratense HOM05D004949 ORTHO05D006006 2.9e-08 64.3 46 63.0
Gohir.A12G128750 Gossypium hirsutum HOM05D004949 ORTHO05D006006 1.2e-06 58.9 47 55.3
PSO541G1551 Papaver somniferum HOM05D004949 ORTHO05D009901 1.6e-06 58.5 77 45.5
THA.LOC104827753 Tarenaya hassleriana HOM05D004949 ORTHO05D006006 1.6e-06 58.5 52 61.5


User provided reference genes

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