Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc01g0007300 Simmondsia chinensis HOM05D007450 ORTHO05D009377 7.0e-67 257.3 144 100.0
Rhsim07G0130700 Rhododendron simsii HOM05D007450 ORTHO05D009377 7.8e-18 94.4 122 45.1
FvH4_5g22750 Fragaria vesca HOM05D007450 ORTHO05D009377 1.0e-17 94.0 134 47.0
FAN18G1197 Fragaria x ananassa HOM05D007450 ORTHO05D009377 1.0e-17 94.0 134 47.0
FAN18G1518 Fragaria x ananassa HOM05D007450 ORTHO05D009377 1.0e-17 94.0 134 47.0
Prupe.5G030900 Prunus persica HOM05D007450 ORTHO05D009377 2.3e-17 92.8 134 43.3
Hund11210 Selenicereus undatus HOM05D007450 ORTHO05D009377 5.1e-17 91.7 102 52.9
CiPaw.11G096800 Carya illinoinensis HOM05D007450 ORTHO05D009377 6.6e-17 91.3 134 42.5
FAN08G0787 Fragaria x ananassa HOM05D007450 ORTHO05D009377 6.6e-17 91.3 134 45.5
C05p38880 Brassica napus HOM05D007450 ORTHO05D009377 8.7e-17 90.9 135 42.2
BolC5t32629H Brassica oleracea HOM05D007450 ORTHO05D009377 8.7e-17 90.9 135 42.2
GSVIVG01013568001 Vitis vinifera HOM05D007450 ORTHO05D009377 8.7e-17 90.9 114 48.2
FAN04G2147 Fragaria x ananassa HOM05D007450 ORTHO05D009377 1.1e-16 90.5 134 46.3
Actinidia09178 Actinidia chinensis HOM05D007450 ORTHO05D009377 1.5e-16 90.1 112 46.4
BraA05t21386Z Brassica rapa HOM05D007450 ORTHO05D009377 1.5e-16 90.1 135 43.0
FAN13G0277 Fragaria x ananassa HOM05D007450 ORTHO05D009377 1.5e-16 90.1 134 46.3
FAN13G1033 Fragaria x ananassa HOM05D007450 ORTHO05D009377 1.5e-16 90.1 134 46.3
Potri.001G138700 Populus trichocarpa HOM05D007450 ORTHO05D009377 1.5e-16 90.1 102 50.0
BcaC05g27880 Brassica carinata HOM05D007450 ORTHO05D009377 1.9e-16 89.7 134 41.8
Cfa012487 Carpinus fangiana HOM05D007450 ORTHO05D009377 1.9e-16 89.7 134 43.3
Medtr5g029660 Medicago truncatula HOM05D007450 ORTHO05D009377 3.3e-16 89.0 134 40.3
Actinidia14787 Actinidia chinensis HOM05D007450 ORTHO05D009377 5.6e-16 88.2 120 45.0
A05p25040 Brassica napus HOM05D007450 ORTHO05D009377 5.6e-16 88.2 127 44.1
Thhalv10009436m.g Eutrema salsugineum HOM05D007450 ORTHO05D009377 7.3e-16 87.8 134 41.0
Psat2g138000 Pisum sativum HOM05D007450 ORTHO05D009377 7.3e-16 87.8 134 40.3
vmacro14189 Vaccinium macrocarpon HOM05D007450 ORTHO05D009377 9.6e-16 87.4 119 44.5
Carub.0001s3064 Capsella rubella HOM05D007450 ORTHO05D009377 1.3e-15 87.0 134 41.8
MELO3C003430.2 Cucumis melo HOM05D007450 ORTHO05D009377 1.3e-15 87.0 127 40.9
RcHm_v2.0_Chr7g0211351 Rosa chinensis HOM05D007450 ORTHO05D009377 1.3e-15 87.0 134 44.8
Atru.chr6.1639 Acer truncatum HOM05D007450 ORTHO05D009377 1.6e-15 86.7 102 48.0
Lj2g0017142 Lotus japonicus HOM05D007450 ORTHO05D009377 2.1e-15 86.3 135 41.5
Manes.14G162800 Manihot esculenta HOM05D007450 ORTHO05D009377 2.1e-15 86.3 127 43.3
THA.LOC104798592 Tarenaya hassleriana HOM05D007450 ORTHO05D009377 2.1e-15 86.3 135 41.5
Cc08_g03220 Coffea canephora HOM05D007450 ORTHO05D009377 2.8e-15 85.9 119 44.5
Nitab4.5_0000685g0040 Nicotiana tabacum HOM05D007450 ORTHO05D009377 2.8e-15 85.9 129 44.2
Dinv28985 Davidia involucrata HOM05D007450 ORTHO05D009377 3.6e-15 85.5 133 42.9
PGR031G1038 Punica granatum HOM05D007450 ORTHO05D009377 3.6e-15 85.5 141 38.3
Sp1g27980 Schrenkiella parvula HOM05D007450 ORTHO05D009377 3.6e-15 85.5 113 45.1
BcaB03g13745 Brassica carinata HOM05D007450 ORTHO05D009377 4.8e-15 85.1 127 43.3
ECA233G1068 Erigeron canadensis HOM05D007450 ORTHO05D009377 4.8e-15 85.1 120 44.2
PGSC0003DMG400014800 Solanum tuberosum HOM05D007450 ORTHO05D009377 4.8e-15 85.1 129 43.4
DCAR_008242 Daucus carota HOM05D007450 ORTHO05D009377 6.2e-15 84.7 111 45.9
THA.LOC104808475 Tarenaya hassleriana HOM05D007450 ORTHO05D009377 6.2e-15 84.7 130 40.8
Thecc.03G307400 Theobroma cacao HOM05D007450 ORTHO05D009377 6.2e-15 84.7 112 45.5
Eucgr.E00251 Eucalyptus grandis HOM05D007450 ORTHO05D009377 1.1e-14 84.0 119 43.7
Gohir.A12G207000 Gossypium hirsutum HOM05D007450 ORTHO05D009377 1.1e-14 84.0 131 43.5
Sopen08g025140 Solanum pennellii HOM05D007450 ORTHO05D009377 1.1e-14 84.0 129 43.4
Lsat_1_v5_gn_6_1640 Lactuca sativa HOM05D007450 ORTHO05D009377 1.4e-14 83.6 123 42.3
Nitab4.5_0000353g0070 Nicotiana tabacum HOM05D007450 ORTHO05D009377 2.4e-14 82.8 121 43.8
Sed0022287 Sechium edule HOM05D007450 ORTHO05D009377 2.4e-14 82.8 122 40.2
Dinv25243 Davidia involucrata HOM05D007450 ORTHO05D009377 3.1e-14 82.4 140 41.4
Gohir.D12G209400 Gossypium hirsutum HOM05D007450 ORTHO05D009377 3.1e-14 82.4 98 48.0
Peaxi162Scf00170g00915 Petunia axillaris HOM05D007450 ORTHO05D009377 3.1e-14 82.4 125 44.0
AT1G32310 Arabidopsis thaliana HOM05D007450 ORTHO05D009377 4.0e-14 82.0 113 44.2
Solyc08g076580.3 Solanum lycopersicum HOM05D007450 ORTHO05D009377 4.0e-14 82.0 123 43.9
EL10Ac5g12043 Beta vulgaris HOM05D007450 ORTHO05D009377 5.3e-14 81.6 66 62.1
ClCG09G011730 Citrullus lanatus HOM05D007450 ORTHO05D009377 5.3e-14 81.6 115 40.9
Haze_08178 Corylus avellana HOM05D007450 ORTHO05D009377 6.9e-14 81.3 127 40.2
Sabra01G0107700 Salix brachista HOM05D007450 ORTHO05D009377 6.9e-14 81.3 81 51.9
CARHR031660 Cardamine hirsuta HOM05D007450 ORTHO05D009377 9.0e-14 80.9 113 43.4
Peaxi162Scf00879g00221 Petunia axillaris HOM05D007450 ORTHO05D009377 9.0e-14 80.9 123 42.3
CAN.G298.58 Capsicum annuum HOM05D007450 ORTHO05D009377 1.2e-13 80.5 123 43.9
Ca_08150_v3 Cicer arietinum L. HOM05D007450 ORTHO05D009377 1.5e-13 80.1 134 37.3
Peaxi162Scf00170g01010 Petunia axillaris HOM05D007450 ORTHO05D009377 1.5e-13 80.1 123 42.3
TAR629G3037 Trochodendron aralioides HOM05D007450 ORTHO05D009377 1.5e-13 80.1 142 41.5
CANSAT21G1074 Cannabis sativa HOM05D007450 ORTHO05D009377 2.0e-13 79.7 99 46.5
Duzib205G1651 Durio zibethinus HOM05D007450 ORTHO05D009377 2.6e-13 79.3 108 43.5
CSS0005314 Camellia sinensis var. sinensis HOM05D007450 ORTHO05D009377 3.4e-13 79.0 119 42.0
Potri.003G095100 Populus trichocarpa HOM05D007450 ORTHO05D009377 9.9e-13 77.4 82 48.8
MD06G1038000 Malus domestica HOM05D007450 ORTHO05D009377 1.7e-12 76.6 142 38.7
Gorai.008G225000 Gossypium raimondii HOM05D007450 ORTHO05D009377 2.2e-12 76.3 80 51.2
Lalb_Chr05g0215841 Lupinus albus HOM05D007450 ORTHO05D009377 2.2e-12 76.3 61 63.9
Ciclev10018330m.g Citrus clementina HOM05D007450 ORTHO05D009377 2.9e-12 75.9 110 42.7
Aa31LG2G13720 Aethionema arabicum HOM05D007450 ORTHO05D009377 4.9e-12 75.1 113 39.8
Glyma.01G015700 Glycine max HOM05D007450 ORTHO05D009377 4.9e-12 75.1 134 44.0
arahy.Tifrunner.gnm1.ann1.UE78BX Arachis hypogaea HOM05D007450 ORTHO05D009377 8.4e-12 74.3 122 41.0
arahy.Tifrunner.gnm1.ann1.XXZI65 Arachis hypogaea HOM05D007450 ORTHO05D009377 8.4e-12 74.3 122 41.0
AUR62018673 Chenopodium quinoa HOM05D007450 ORTHO05D009377 1.4e-11 73.6 98 45.9
TPR.G8094 Trifolium pratense HOM05D007450 ORTHO05D009377 1.4e-11 73.6 138 39.1
Glyma.09G206700 Glycine max HOM05D007450 ORTHO05D009377 1.9e-11 73.2 134 43.3
MSTRG.1994 Avicennia marina HOM05D007450 ORTHO05D009377 2.4e-11 72.8 85 51.8
Sed0003049 Sechium edule HOM05D007450 ORTHO05D009377 1.2e-10 70.5 127 36.2
HanXRQChr13g0395471 Helianthus annuus HOM05D007450 ORTHO05D009377 4.6e-10 68.6 120 39.2
VMungo1215G2816 Vigna mungo HOM05D007450 ORTHO05D009377 6.0e-10 68.2 110 40.0
SalBow1G6923 Salvia bowleyana HOM05D007450 ORTHO05D009377 1.8e-09 66.6 56 58.9
Aqoxy3G02217 Aquilegia oxysepala HOM05D007450 ORTHO05D009377 3.0e-09 65.9 78 44.9
HPP92_001521 Vanilla planifolia HOM05D007450 ORTHO05D009377 3.0e-09 65.9 109 38.5
QL12p004405 Quercus lobata HOM05D007450 ORTHO05D009377 3.9e-09 65.5 122 38.5
Phvul.002G138300 Phaseolus vulgaris HOM05D007450 ORTHO05D009377 5.1e-09 65.1 134 41.0
PSO782G2764 Papaver somniferum HOM05D007450 ORTHO05D009377 1.1e-08 63.9 115 36.5
CsaV3_3G048930 Cucumis sativus L. HOM05D007450 ORTHO05D009377 1.9e-08 63.2 39 74.4
SHI36446 Sapria himalayana HOM05D007450 ORTHO05D009377 3.3e-08 62.4 78 43.6
Zm00001eb024740 Zea mays HOM05D007450 ORTHO05D009377 4.3e-08 62.0 40 67.5
COL.COLO4_16968 Corchorus olitorius HOM05D007450 ORTHO05D009377 5.6e-08 61.6 53 60.4
PSO063G4138 Papaver somniferum HOM05D007450 ORTHO05D009377 5.6e-08 61.6 39 71.8
Os10g0575950 Oryza sativa ssp. japonica HOM05D007450 ORTHO05D009377 9.6e-08 60.8 41 68.3
ATR0829G039 Amborella trichopoda HOM05D007450 ORTHO05D009377 1.3e-07 60.5 74 45.9
Migut.E00781 Erythranthe guttata HOM05D007450 ORTHO05D009377 1.3e-07 60.5 56 57.1
CDE11G0326 Ceratophyllum demersum HOM05D007450 ORTHO05D009377 2.1e-07 59.7 39 71.8
Lalb_Chr16g0381181 Lupinus albus HOM05D007450 ORTHO05D009377 1.1e-06 57.4 99 38.4
CARHR033090 Cardamine hirsuta HOM05D007450 ORTHO05D009377 4.0e-06 55.5 43 58.1


User provided reference genes

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