Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc01g0007170 Simmondsia chinensis HOM05D007538 ORTHO05D009464 6.0e-132 474.2 236 100.0
AUR62007351 Chenopodium quinoa HOM05D007538 ORTHO05D009464 3.7e-41 172.6 232 45.7
Dinv25258 Davidia involucrata HOM05D007538 ORTHO05D009464 1.1e-40 171.0 243 43.2
AUR62018643 Chenopodium quinoa HOM05D007538 ORTHO05D009464 2.7e-39 166.4 232 44.4
Actinidia01319 Actinidia chinensis HOM05D007538 ORTHO05D009464 4.3e-37 159.1 222 44.6
CSS0028782 Camellia sinensis var. sinensis HOM05D007538 ORTHO05D009464 9.5e-37 157.9 237 41.8
CSS0038946 Camellia sinensis var. sinensis HOM05D007538 ORTHO05D009464 4.7e-36 155.6 237 41.4
MD06G1026300 Malus domestica HOM05D007538 ORTHO05D009464 5.2e-35 152.1 244 41.4
CiPaw.12G068100 Carya illinoinensis HOM05D007538 ORTHO05D009464 2.6e-34 149.8 248 41.9
Ah.12g055490 Amaranthus hybridus HOM05D007538 ORTHO05D009464 3.4e-34 149.4 224 42.9
Thecc.03G310000 Theobroma cacao HOM05D007538 ORTHO05D009464 2.9e-33 146.4 232 38.8
Gorai.008G224100 Gossypium raimondii HOM05D007538 ORTHO05D009464 3.7e-33 146.0 217 41.5
Gohir.D12G208500 Gossypium hirsutum HOM05D007538 ORTHO05D009464 1.1e-32 144.4 217 41.0
TAR629G0149 Trochodendron aralioides HOM05D007538 ORTHO05D009464 3.2e-32 142.9 255 38.8
QL12p001632 Quercus lobata HOM05D007538 ORTHO05D009464 5.4e-32 142.1 240 40.4
Duzib205G0978 Durio zibethinus HOM05D007538 ORTHO05D009464 7.0e-32 141.7 244 37.7
GSVIVG01013092001 Vitis vinifera HOM05D007538 ORTHO05D009464 9.2e-32 141.4 197 42.1
Ciclev10001787m.g Citrus clementina HOM05D007538 ORTHO05D009464 7.8e-31 138.3 269 36.8
Hund14370 Selenicereus undatus HOM05D007538 ORTHO05D009464 1.0e-30 137.9 217 40.1
Prupe.5G028100 Prunus persica HOM05D007538 ORTHO05D009464 1.3e-30 137.5 240 38.3
FvH4_5g23080 Fragaria vesca HOM05D007538 ORTHO05D009464 1.7e-30 137.1 215 39.1
Cfa012515 Carpinus fangiana HOM05D007538 ORTHO05D009464 2.3e-30 136.7 244 38.5
Gohir.A12G206200 Gossypium hirsutum HOM05D007538 ORTHO05D009464 3.0e-30 136.3 211 39.8
Aqoxy3G02177 Aquilegia oxysepala HOM05D007538 ORTHO05D009464 6.6e-30 135.2 241 39.4
FAN08G1825 Fragaria x ananassa HOM05D007538 ORTHO05D009464 6.6e-30 135.2 215 39.1
vmacro00280 Vaccinium macrocarpon HOM05D007538 ORTHO05D009464 2.5e-29 133.3 233 38.2
FAN13G1023 Fragaria x ananassa HOM05D007538 ORTHO05D009464 3.3e-29 132.9 215 38.6
Hma1.2p1_1569F.1_g291220 Hydrangea macrophylla HOM05D007538 ORTHO05D009464 3.3e-29 132.9 231 37.7
EL10Ac5g12015 Beta vulgaris HOM05D007538 ORTHO05D009464 7.3e-29 131.7 222 40.1
Potri.001G137000 Populus trichocarpa HOM05D007538 ORTHO05D009464 7.3e-29 131.7 244 37.3
TWI60G0985 Tripterygium wilfordii HOM05D007538 ORTHO05D009464 9.5e-29 131.3 241 38.2
RcHm_v2.0_Chr7g0211801 Rosa chinensis HOM05D007538 ORTHO05D009464 1.6e-28 130.6 244 36.9
TWI15G0751 Tripterygium wilfordii HOM05D007538 ORTHO05D009464 1.6e-28 130.6 241 37.8
COL.COLO4_16943 Corchorus olitorius HOM05D007538 ORTHO05D009464 3.6e-28 129.4 248 36.7
Haze_08148 Corylus avellana HOM05D007538 ORTHO05D009464 4.7e-28 129.0 242 37.6
Eucgr.E00229 Eucalyptus grandis HOM05D007538 ORTHO05D009464 1.8e-27 127.1 254 37.4
FAN18G3589 Fragaria x ananassa HOM05D007538 ORTHO05D009464 4.4e-26 122.5 203 37.4
CANSAT21G1184 Cannabis sativa HOM05D007538 ORTHO05D009464 5.8e-26 122.1 232 36.6
Glyma.01G014500 Glycine max HOM05D007538 ORTHO05D009464 5.8e-26 122.1 243 35.8
CANSAT21G1947 Cannabis sativa HOM05D007538 ORTHO05D009464 7.5e-26 121.7 237 35.4
Glyma.09G207600 Glycine max HOM05D007538 ORTHO05D009464 9.8e-26 121.3 243 36.2
PGR042G1771 Punica granatum HOM05D007538 ORTHO05D009464 2.2e-25 120.2 248 35.5
VMungo1215G0128 Vigna mungo HOM05D007538 ORTHO05D009464 2.9e-25 119.8 239 34.7
TPR.G19431 Trifolium pratense HOM05D007538 ORTHO05D009464 8.3e-25 118.2 216 36.6
Rhsim11G0021400 Rhododendron simsii HOM05D007538 ORTHO05D009464 5.4e-24 115.5 232 36.6
Lj2g0003780 Lotus japonicus HOM05D007538 ORTHO05D009464 2.0e-23 113.6 231 35.9
Atru.chr6.1522 Acer truncatum HOM05D007538 ORTHO05D009464 4.6e-23 112.5 185 37.8
arahy.Tifrunner.gnm1.ann1.IVG2V7 Arachis hypogaea HOM05D007538 ORTHO05D009464 4.6e-23 112.5 213 34.7
arahy.Tifrunner.gnm1.ann1.UGGX0P Arachis hypogaea HOM05D007538 ORTHO05D009464 4.6e-23 112.5 213 34.7
Medtr5g029310 Medicago truncatula HOM05D007538 ORTHO05D009464 4.6e-23 112.5 223 35.0
Sabra01G0106100 Salix brachista HOM05D007538 ORTHO05D009464 3.0e-22 109.8 234 34.2
Oeu027088.1 Olea europaea HOM05D007538 ORTHO05D009464 3.9e-22 109.4 250 34.4
FAN04G2865 Fragaria x ananassa HOM05D007538 ORTHO05D009464 5.0e-22 109.0 231 34.6
Lalb_Chr05g0215781 Lupinus albus HOM05D007538 ORTHO05D009464 6.6e-22 108.6 216 34.7
Phvul.002G136900 Phaseolus vulgaris HOM05D007538 ORTHO05D009464 6.6e-22 108.6 239 32.6
Nn1g00207 Nelumbo nucifera HOM05D007538 ORTHO05D009464 8.6e-22 108.2 209 38.8
DCAR_008224 Daucus carota HOM05D007538 ORTHO05D009464 1.9e-21 107.1 258 36.0
Lalb_Chr16g0381091 Lupinus albus HOM05D007538 ORTHO05D009464 1.9e-21 107.1 228 33.3
PGSC0003DMG400014793 Solanum tuberosum HOM05D007538 ORTHO05D009464 2.5e-21 106.7 246 34.6
Ca_25180_v3 Cicer arietinum L. HOM05D007538 ORTHO05D009464 1.6e-20 104.0 195 36.4
Haze_08149 Corylus avellana HOM05D007538 ORTHO05D009464 1.4e-19 100.9 228 35.1
Manes.17G017000 Manihot esculenta HOM05D007538 ORTHO05D009464 1.4e-19 100.9 274 31.4
Cc08_g03440 Coffea canephora HOM05D007538 ORTHO05D009464 1.8e-19 100.5 232 32.8
ClCG10G001280 Citrullus lanatus HOM05D007538 ORTHO05D009464 1.2e-18 97.8 190 36.8
Solyc08g076430.3 Solanum lycopersicum HOM05D007538 ORTHO05D009464 2.0e-18 97.1 246 33.3
SGA_v2.0_scaffold36G14297 Striga asiatica HOM05D006137 ORTHO05D007697 7.5e-18 95.1 231 33.8
MSTRG.13737 Avicennia marina HOM05D007538 ORTHO05D009464 9.8e-18 94.7 206 35.4
PSO063G5413 Papaver somniferum HOM05D007538 ORTHO05D009464 9.8e-18 94.7 225 33.3
Sopen08g025010 Solanum pennellii HOM05D007538 ORTHO05D009464 9.8e-18 94.7 246 32.9
SalBow6G3044 Salvia bowleyana HOM05D007538 ORTHO05D009464 4.9e-17 92.4 206 34.5
CsaV3_3G001350 Cucumis sativus L. HOM05D007538 ORTHO05D009464 2.4e-16 90.1 191 38.2
Nitab4.5_0000529g0180 Nicotiana tabacum HOM05D007538 ORTHO05D009464 2.4e-16 90.1 230 31.3
Sed0002033 Sechium edule HOM05D007538 ORTHO05D009464 2.4e-16 90.1 192 33.9
MELO3C013823.2 Cucumis melo HOM05D007538 ORTHO05D009464 3.2e-16 89.7 206 37.4
HanXRQChr03g0083271 Helianthus annuus HOM05D007538 ORTHO05D009464 3.2e-16 89.7 205 35.1
Peaxi162Scf00170g00623 Petunia axillaris HOM05D007538 ORTHO05D009464 9.2e-16 88.2 229 31.9
Migut.E00746 Erythranthe guttata HOM05D007538 ORTHO05D009464 1.6e-15 87.4 239 33.1
Nitab4.5_0000809g0070 Nicotiana tabacum HOM05D007538 ORTHO05D009464 2.1e-15 87.0 232 32.3
ECA240G2786 Erigeron canadensis HOM05D007538 ORTHO05D009464 2.7e-15 86.7 207 34.3
Cpa.g.sc208.8 Carica papaya HOM05D007538 ORTHO05D009464 7.8e-15 85.1 164 34.1
Psat0s3175g0080 Pisum sativum HOM05D007538 ORTHO05D009464 7.8e-15 85.1 207 32.4
FAN18G1171 Fragaria x ananassa HOM05D007538 ORTHO05D009464 3.9e-14 82.8 152 34.9
Zm00001eb187890 Zea mays HOM05D007538 ORTHO05D009464 1.9e-13 80.5 219 30.6
Os02g0697200 Oryza sativa ssp. japonica HOM05D007538 ORTHO05D009464 4.7e-12 75.9 242 28.9
unitig_22.g5510 Utricularia gibba HOM05D007538 ORTHO05D009464 8.9e-11 71.6 207 33.8
Lsat_1_v5_gn_6_80020 Lactuca sativa HOM05D007538 ORTHO05D009464 1.3e-09 67.8 226 29.6
MBI04_g44375_MAGBIO Magnolia biondii HOM05D007538 ORTHO05D009464 2.2e-09 67.0 154 33.8
MBI04_g32200_MAGBIO Magnolia biondii HOM05D007538 ORTHO05D009464 2.1e-07 60.5 89 42.7
THA.LOC104798612 Tarenaya hassleriana HOM05D007538 ORTHO05D009464 1.7e-06 57.4 72 45.8
HPP92_020896 Vanilla planifolia HOM05D007538 ORTHO05D009464 6.6e-06 55.5 200 31.0


User provided reference genes

Program Settings