Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc01g0006970 Simmondsia chinensis HOM05D001997 ORTHO05D005560 3.0e-70 268.5 142 100.0
Ah.07g202650 Amaranthus hybridus HOM05D001997 ORTHO05D005560 7.4e-45 184.1 144 69.4
Dinv02939 Davidia involucrata HOM05D001997 ORTHO05D005560 4.8e-44 181.4 122 77.9
Dinv33196 Davidia involucrata HOM05D001997 ORTHO05D005560 4.1e-43 178.3 121 78.5
QL10p053341 Quercus lobata HOM05D001997 ORTHO05D005560 4.1e-43 178.3 114 80.7
CiPaw.02G100900 Carya illinoinensis HOM05D001997 ORTHO05D005560 1.5e-42 176.4 114 81.6
Gohir.D02G109200 Gossypium hirsutum HOM05D001997 ORTHO05D005560 1.5e-42 176.4 114 78.9
Gorai.005G124400 Gossypium raimondii HOM05D001997 ORTHO05D005560 1.5e-42 176.4 114 78.9
TWI15G0247 Tripterygium wilfordii HOM05D001997 ORTHO05D005560 2.0e-42 176.0 114 78.1
TWI63G1293 Tripterygium wilfordii HOM05D001997 ORTHO05D005560 2.0e-42 176.0 114 78.9
Eucgr.A00017 Eucalyptus grandis HOM05D001997 ORTHO05D005560 2.6e-42 175.6 115 80.0
LjContig00312_ERROPOS870357g0002022 Lotus japonicus HOM05D001997 ORTHO05D005560 2.6e-42 175.6 120 77.5
TPR.G15125 Trifolium pratense HOM05D001997 ORTHO05D005560 2.6e-42 175.6 118 78.8
QL10p054519 Quercus lobata HOM05D001997 ORTHO05D005560 4.5e-42 174.9 114 79.8
Haze_01373 Corylus avellana HOM05D001997 ORTHO05D004620 7.7e-42 174.1 114 79.8
Duzib268G1453 Durio zibethinus HOM05D001997 ORTHO05D005560 7.7e-42 174.1 114 78.9
Manes.11G130400 Manihot esculenta HOM05D001997 ORTHO05D005560 1.0e-41 173.7 115 77.4
Gohir.A02G091400 Gossypium hirsutum HOM05D001997 ORTHO05D005560 1.3e-41 173.3 114 78.1
MELO3C002757.2 Cucumis melo HOM05D001997 ORTHO05D005560 1.7e-41 172.9 104 82.7
CsaV3_1G036760 Cucumis sativus L. HOM05D001997 ORTHO05D005560 1.7e-41 172.9 104 82.7
Psat2g000880 Pisum sativum HOM05D001997 ORTHO05D005560 1.7e-41 172.9 118 78.0
AUR62026225 Chenopodium quinoa HOM05D001997 ORTHO05D005560 2.2e-41 172.6 134 68.7
PGR004G0495 Punica granatum HOM05D001997 ORTHO05D005560 2.9e-41 172.2 114 77.2
Manes.16G067100 Manihot esculenta HOM05D001997 ORTHO05D005560 5.0e-41 171.4 114 76.3
VMungo1127G1119 Vigna mungo HOM05D001997 ORTHO05D005560 5.0e-41 171.4 118 77.1
AUR62026408 Chenopodium quinoa HOM05D001997 ORTHO05D005560 6.5e-41 171.0 128 70.3
Ciclev10022891m.g Citrus clementina HOM05D001997 ORTHO05D005560 6.5e-41 171.0 114 75.4
Manes.04G036800 Manihot esculenta HOM05D001997 ORTHO05D005560 6.5e-41 171.0 114 75.4
Phvul.011G004600 Phaseolus vulgaris HOM05D001997 ORTHO05D005560 6.5e-41 171.0 118 77.1
Medtr3g110098 Medicago truncatula HOM05D001997 ORTHO05D005560 8.5e-41 170.6 114 77.2
Hma1.2p1_0855F.1_g228990 Hydrangea macrophylla HOM05D001997 ORTHO05D005560 1.1e-40 170.2 122 72.1
QL04p073793 Quercus lobata HOM05D001997 ORTHO05D005560 1.1e-40 170.2 116 76.7
Rhsim02G0083500 Rhododendron simsii HOM05D001997 ORTHO05D005560 1.1e-40 170.2 116 76.7
EL10Ac3g06063 Beta vulgaris HOM05D001997 ORTHO05D005560 1.4e-40 169.9 143 64.3
ClCG03G006590 Citrullus lanatus HOM05D001997 ORTHO05D005560 1.4e-40 169.9 104 82.7
CSS0005460 Camellia sinensis var. sinensis HOM05D001997 ORTHO05D005560 1.9e-40 169.5 118 73.7
CSS0042570 Camellia sinensis var. sinensis HOM05D001997 ORTHO05D005560 1.9e-40 169.5 118 73.7
TAR362G0574 Trochodendron aralioides HOM05D001997 ORTHO05D005560 1.9e-40 169.5 122 71.3
Potri.013G125200 Populus trichocarpa HOM05D001997 ORTHO05D005560 3.2e-40 168.7 114 75.4
Aqoxy3G00613 Aquilegia oxysepala HOM05D001997 ORTHO05D005560 5.5e-40 167.9 116 73.3
arahy.Tifrunner.gnm1.ann1.U4TVD9 Arachis hypogaea HOM05D001997 ORTHO05D005560 7.2e-40 167.5 118 75.4
Glyma.09G232500 Glycine max HOM05D001997 ORTHO05D005560 9.4e-40 167.2 118 76.3
Lalb_Chr02g0159681 Lupinus albus HOM05D001997 ORTHO05D005560 9.4e-40 167.2 113 78.8
Actinidia11445 Actinidia chinensis HOM05D001997 ORTHO05D005560 1.2e-39 166.8 116 76.7
Ah.13g073580 Amaranthus hybridus HOM05D000242 ORTHO05D005560 1.2e-39 166.8 100 80.0
Cc10_g09020 Coffea canephora HOM05D001997 ORTHO05D005560 2.7e-39 165.6 120 74.2
Prupe.1G570200 Prunus persica HOM05D001997 ORTHO05D005560 2.7e-39 165.6 114 73.7
Sed0015466 Sechium edule HOM05D001997 ORTHO05D005560 2.7e-39 165.6 104 77.9
AL4G42460 Arabidopsis lyrata HOM05D001997 ORTHO05D005560 6.1e-39 164.5 115 72.2
C04p04630 Brassica napus HOM05D001997 ORTHO05D005560 6.1e-39 164.5 111 75.7
MD15G1424200 Malus domestica HOM05D001997 ORTHO05D005560 6.1e-39 164.5 114 73.7
Atru.chr4.1389 Acer truncatum HOM05D001997 ORTHO05D005560 7.9e-39 164.1 114 72.8
arahy.Tifrunner.gnm1.ann1.HCPJ2X Arachis hypogaea HOM05D001997 ORTHO05D005560 7.9e-39 164.1 118 73.7
BcaB06g29333 Brassica carinata HOM05D001997 ORTHO05D005560 7.9e-39 164.1 108 76.9
BcaC02g12374 Brassica carinata HOM05D001997 ORTHO05D005560 7.9e-39 164.1 108 76.9
BolC4t22094H Brassica oleracea HOM05D001997 ORTHO05D005560 7.9e-39 164.1 112 75.0
FAN13G1284 Fragaria x ananassa HOM05D001997 ORTHO05D005560 7.9e-39 164.1 98 81.6
Carub.0004s2617 Capsella rubella HOM05D001997 ORTHO05D005560 1.0e-38 163.7 115 71.3
Actinidia27107 Actinidia chinensis HOM05D001997 ORTHO05D005560 1.8e-38 162.9 116 71.6
BcaB01g03370 Brassica carinata HOM05D001997 ORTHO05D005560 1.8e-38 162.9 108 75.9
BcaB02g08911 Brassica carinata HOM05D001997 ORTHO05D005560 1.8e-38 162.9 108 75.9
BraA03t11647Z Brassica rapa HOM05D001997 ORTHO05D005560 1.8e-38 162.9 104 78.8
A03p24380 Brassica napus HOM05D001997 ORTHO05D005560 2.3e-38 162.5 104 77.9
CSS0006622 Camellia sinensis var. sinensis HOM05D001997 ORTHO05D005560 2.3e-38 162.5 117 73.5
FvH4_5g22590 Fragaria vesca HOM05D001997 ORTHO05D005560 2.3e-38 162.5 97 81.4
FAN04G0119 Fragaria x ananassa HOM05D001997 ORTHO05D005560 2.3e-38 162.5 97 81.4
FAN08G3153 Fragaria x ananassa HOM05D001997 ORTHO05D005560 2.3e-38 162.5 97 81.4
FAN18G2915 Fragaria x ananassa HOM05D001997 ORTHO05D005560 2.3e-38 162.5 97 81.4
Lj3g0018936 Lotus japonicus HOM05D001997 ORTHO05D005560 2.3e-38 162.5 120 73.3
SalBow2G2973 Salvia bowleyana HOM05D001997 ORTHO05D005560 2.3e-38 162.5 108 76.9
Thecc.04G168000 Theobroma cacao HOM05D001997 ORTHO05D005560 2.3e-38 162.5 114 74.6
arahy.Tifrunner.gnm1.ann1.NB68NZ Arachis hypogaea HOM05D001997 ORTHO05D005560 3.0e-38 162.2 118 72.9
A05p03900 Brassica napus HOM05D001997 ORTHO05D005560 3.0e-38 162.2 108 75.9
BraA05t19377Z Brassica rapa HOM05D001997 ORTHO05D005560 3.0e-38 162.2 112 74.1
BcaC01g05223 Brassica carinata HOM05D001997 ORTHO05D005560 3.9e-38 161.8 116 74.1
A04p32920 Brassica napus HOM05D001997 ORTHO05D005560 3.9e-38 161.8 104 77.9
C03p29060 Brassica napus HOM05D001997 ORTHO05D005560 3.9e-38 161.8 120 72.5
BolC3t15260H Brassica oleracea HOM05D001997 ORTHO05D005560 3.9e-38 161.8 120 72.5
Solyc06g053385.2 Solanum lycopersicum HOM05D001997 ORTHO05D005560 3.9e-38 161.8 122 71.3
Sopen06g018440 Solanum pennellii HOM05D001997 ORTHO05D005560 3.9e-38 161.8 122 71.3
MSTRG.22024 Avicennia marina HOM05D001997 ORTHO05D005560 5.2e-38 161.4 117 73.5
Migut.M00095 Erythranthe guttata HOM05D001997 ORTHO05D005560 5.2e-38 161.4 122 71.3
Oeu032138.1 Olea europaea HOM05D001997 ORTHO05D005560 5.2e-38 161.4 122 71.3
PGSC0003DMG400016301 Solanum tuberosum HOM05D001997 ORTHO05D005560 5.2e-38 161.4 122 71.3
THA.LOC104802323 Tarenaya hassleriana HOM05D001997 ORTHO05D005560 5.2e-38 161.4 112 73.2
BraA04t18752Z Brassica rapa HOM05D001997 ORTHO05D005560 6.7e-38 161.0 108 75.9
RcHm_v2.0_Chr7g0210361 Rosa chinensis HOM05D001997 ORTHO05D005560 8.8e-38 160.6 97 80.4
Sp4g25740 Schrenkiella parvula HOM05D001997 ORTHO05D005560 8.8e-38 160.6 114 71.9
Migut.N03073 Erythranthe guttata HOM05D001997 ORTHO05D005560 1.1e-37 160.2 122 70.5
Nn1g09687 Nelumbo nucifera HOM05D001997 ORTHO05D005560 1.5e-37 159.8 117 68.4
unitig_27.g24921 Utricularia gibba HOM05D001997 ORTHO05D005560 1.5e-37 159.8 123 69.1
CAN.G103.22 Capsicum annuum HOM05D001997 ORTHO05D005560 2.0e-37 159.5 122 69.7
CiPaw.01G171400 Carya illinoinensis HOM05D001997 ORTHO05D005560 2.0e-37 159.5 114 75.4
Nitab4.5_0001586g0040 Nicotiana tabacum HOM05D001997 ORTHO05D005560 3.3e-37 158.7 123 68.3
Nitab4.5_0004056g0040 Nicotiana tabacum HOM05D001997 ORTHO05D005560 3.3e-37 158.7 123 68.3
Aa31LG1G25360 Aethionema arabicum HOM05D001997 ORTHO05D005560 4.4e-37 158.3 114 71.9
CANSAT56G1366 Cannabis sativa HOM05D001997 ORTHO05D005560 9.7e-37 157.1 105 75.2
CANSAT56G3121 Cannabis sativa HOM05D001997 ORTHO05D005560 9.7e-37 157.1 105 75.2
CARHR138820 Cardamine hirsuta HOM05D001997 ORTHO05D005560 1.3e-36 156.8 98 79.6
MD08G1231600 Malus domestica HOM05D001997 ORTHO05D005560 1.3e-36 156.8 114 71.9
Thhalv10001685m.g Eutrema salsugineum HOM05D001997 ORTHO05D005560 2.2e-36 156.0 114 69.3
Glyma.12G004000 Glycine max HOM05D001997 ORTHO05D005560 3.7e-36 155.2 106 79.2
HPP92_004665 Vanilla planifolia HOM05D001997 ORTHO05D005560 8.2e-36 154.1 108 67.6
Peaxi162Scf00180g00117 Petunia axillaris HOM05D001997 ORTHO05D005560 1.4e-35 153.3 123 66.7
SGA_v2.0_scaffold25G10995 Striga asiatica HOM05D000987 ORTHO05D000831 1.4e-35 153.3 122 68.0
PSO675G0853 Papaver somniferum HOM05D001997 ORTHO05D005560 1.8e-35 152.9 120 65.8
Cpa.g.sc9.355 Carica papaya HOM05D001997 ORTHO05D005560 2.4e-35 152.5 103 73.8
PSO017G7267 Papaver somniferum HOM05D001997 ORTHO05D005560 1.6e-34 149.8 120 64.2
Sc18g0007150 Simmondsia chinensis HOM05D001997 ORTHO05D005560 2.0e-34 149.4 86 86.0
HanXRQChr14g0432491 Helianthus annuus HOM05D001997 ORTHO05D005560 7.7e-34 147.5 120 65.0
MBI08_g25560_MAGBIO Magnolia biondii HOM05D001997 ORTHO05D005560 7.7e-34 147.5 112 67.0
GSVIVG01038131001 Vitis vinifera HOM05D001997 ORTHO05D005560 1.3e-33 146.7 101 75.2
THA.LOC104819704 Tarenaya hassleriana HOM05D001997 ORTHO05D005560 3.8e-33 145.2 114 65.8
Os04g0623700 Oryza sativa ssp. japonica HOM05D001997 ORTHO05D005560 8.5e-33 144.1 103 66.0
DCAR_003034 Daucus carota HOM05D001997 ORTHO05D005560 1.1e-32 143.7 102 75.5
FAN18G1136 Fragaria x ananassa HOM05D001997 ORTHO05D005560 1.1e-32 143.7 85 82.4
CSS0004625 Camellia sinensis var. sinensis HOM05D001997 ORTHO05D005560 3.2e-32 142.1 112 67.0
Zm00001eb070260 Zea mays HOM05D001997 ORTHO05D005560 3.2e-32 142.1 124 59.7
C04p70600 Brassica napus HOM05D001997 ORTHO05D005560 2.1e-31 139.4 90 76.7
ATR0075G039 Amborella trichopoda HOM05D001997 ORTHO05D005560 6.1e-31 137.9 124 60.5
AT2G43640 Arabidopsis thaliana HOM05D001997 ORTHO05D005560 8.0e-31 137.5 115 63.5
Lsat_1_v5_gn_3_138061 Lactuca sativa HOM05D001997 ORTHO05D005560 1.0e-30 137.1 94 71.3
Atru.chr12.1238 Acer truncatum HOM05D001997 ORTHO05D005560 6.3e-28 127.9 100 65.0
arahy.Tifrunner.gnm1.ann1.B0USY3 Arachis hypogaea HOM05D001997 ORTHO05D005560 4.1e-27 125.2 89 76.4
BcaC02g07159 Brassica carinata HOM05D001997 ORTHO05D005560 3.8e-25 118.6 75 80.0
BolC4t28562H Brassica oleracea HOM05D001997 ORTHO05D005560 3.8e-25 118.6 75 80.0
TAR633G1661 Trochodendron aralioides HOM05D001997 ORTHO05D005560 5.0e-25 118.2 93 69.9
Mapoly0092s0041 Marchantia polymorpha HOM05D001997 ORTHO05D005560 1.9e-24 116.3 106 56.6
Hund12390 Selenicereus undatus HOM05D001997 ORTHO05D005560 1.9e-24 116.3 79 75.9
Pp3c22_3390 Physcomitrium patens HOM05D001997 ORTHO05D005560 6.1e-23 111.3 108 53.7
Oeu007674.1 Olea europaea HOM05D001997 ORTHO05D005560 6.3e-20 101.3 65 75.4
MSTRG.24567 Avicennia marina HOM05D001997 ORTHO05D005560 1.1e-19 100.5 67 73.1
arahy.Tifrunner.gnm1.ann1.9S24RV Arachis hypogaea HOM05D001997 ORTHO05D005560 4.1e-19 98.6 75 66.7
CBR_g30248 Chara braunii HOM05D001997 ORTHO05D005560 7.0e-19 97.8 97 51.5
CDE07G0374 Ceratophyllum demersum HOM05D001997 ORTHO05D005560 1.0e-17 94.0 61 67.2
Psat6g024000 Pisum sativum HOM05D001997 ORTHO05D005560 5.0e-17 91.7 114 50.9
AagrBONN_evm.TU.Sc2ySwM_228.2619 Anthoceros agrestis HOM05D001997 ORTHO05D005560 2.1e-15 86.3 67 59.7
arahy.Tifrunner.gnm1.ann1.IP5VZQ Arachis hypogaea HOM05D001997 ORTHO05D005560 2.1e-15 86.3 72 62.5
Cc10_g09000 Coffea canephora HOM05D001997 ORTHO05D005560 2.8e-15 85.9 55 76.4
arahy.Tifrunner.gnm1.ann1.F176HW Arachis hypogaea HOM05D001997 ORTHO05D005560 3.6e-15 85.5 83 57.8
Hund03190 Selenicereus undatus HOM05D000031 ORTHO05D000030 6.1e-15 84.7 81 54.3
arahy.Tifrunner.gnm1.ann1.TRD1UF Arachis hypogaea HOM05D001997 ORTHO05D005560 1.8e-14 83.2 79 58.2
CARHR119270 Cardamine hirsuta HOM05D001997 ORTHO05D005560 8.3e-12 74.3 54 64.8
Cre01.g031200 Chlamydomonas reinhardtii HOM05D001997 ORTHO05D005560 1.4e-11 73.6 100 43.0
arahy.Tifrunner.gnm1.ann1.E4AJF3 Arachis hypogaea HOM05D001997 ORTHO05D005560 2.4e-11 72.8 66 59.1
CAN.G136.16 Capsicum annuum HOM05D001997 ORTHO05D005560 4.1e-11 72.0 53 67.9
EL10Ac5g10857 Beta vulgaris HOM05D001714 ORTHO05D001932 7.0e-11 71.2 54 72.2
MCO03G443 Micromonas commoda HOM05D001997 ORTHO05D005560 9.2e-11 70.9 118 39.0
PRCOL_00005629 Prasinoderma coloniale HOM05D001997 ORTHO05D005560 1.2e-10 70.5 114 37.7
EL10Ac1g01241 Beta vulgaris HOM05D001714 ORTHO05D005560 1.3e-09 67.0 108 42.6
arahy.Tifrunner.gnm1.ann1.FLH3LF Arachis hypogaea HOM05D001997 ORTHO05D005560 2.9e-09 65.9 88 46.6
Glyma.10G156400 Glycine max HOM05D001997 ORTHO05D005560 1.1e-08 63.9 48 70.8
arahy.Tifrunner.gnm1.ann1.PZN0G5 Arachis hypogaea HOM05D001997 ORTHO05D005560 1.9e-08 63.2 38 81.6
EL10Ac7g17594 Beta vulgaris HOM05D001714 ORTHO05D001932 2.5e-08 62.8 53 62.3
arahy.Tifrunner.gnm1.ann1.XW4Y8U Arachis hypogaea HOM05D001997 ORTHO05D005560 5.6e-08 61.6 74 47.3
Hund12391 Selenicereus undatus HOM05D001997 ORTHO05D005560 1.6e-07 60.1 44 65.9
arahy.Tifrunner.gnm1.ann1.PK2YC0 Arachis hypogaea HOM05D002013 ORTHO05D021515 1.4e-06 57.0 37 75.7
arahy.Tifrunner.gnm1.ann1.LX64UG Arachis hypogaea HOM05D000103 ORTHO05D084991 6.8e-06 54.7 44 61.4


User provided reference genes

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