Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc01g0006840 Simmondsia chinensis HOM05D005866 ORTHO05D007078 3.9e-113 411.8 255 100.0
AUR62042946 Chenopodium quinoa HOM05D005866 ORTHO05D007078 1.3e-60 237.3 260 53.1
Dinv35509 Davidia involucrata HOM05D005866 ORTHO05D007078 2.6e-56 223.0 248 62.1
Potri.006G096700 Populus trichocarpa HOM05D005866 ORTHO05D007078 3.4e-56 222.6 260 51.2
Dinv14530 Davidia involucrata HOM05D005866 ORTHO05D007078 5.8e-56 221.9 248 61.7
Sabra06G0074300 Salix brachista HOM05D005866 ORTHO05D007078 6.4e-55 218.4 228 63.6
AUR62025814 Chenopodium quinoa HOM05D005866 ORTHO05D007078 1.4e-54 217.2 260 50.8
Thecc.05G021700 Theobroma cacao HOM05D005866 ORTHO05D007078 5.4e-54 215.3 260 62.7
Ah.12g060060 Amaranthus hybridus HOM05D005866 ORTHO05D007078 7.1e-54 214.9 253 62.8
CiPaw.09G206400 Carya illinoinensis HOM05D005866 ORTHO05D007078 2.1e-53 213.4 246 57.3
MD04G1147400 Malus domestica HOM05D005866 ORTHO05D007078 1.1e-51 207.6 258 49.6
Carub.0003s0821 Capsella rubella HOM05D005866 ORTHO05D007078 2.5e-51 206.5 224 65.6
GSVIVG01034004001 Vitis vinifera HOM05D000012 ORTHO05D000567 2.5e-51 206.5 258 60.1
Prupe.6G271100 Prunus persica HOM05D000012 ORTHO05D000567 5.6e-51 205.3 258 55.0
PGR031G2542 Punica granatum HOM05D005866 ORTHO05D007078 5.6e-51 205.3 257 65.0
Manes.09G102400 Manihot esculenta HOM05D005866 ORTHO05D007078 7.3e-51 204.9 246 62.6
Cpa.g.sc56.117 Carica papaya HOM05D005866 ORTHO05D007078 9.5e-51 204.5 264 58.3
CSS0007949 Camellia sinensis var. sinensis HOM05D005866 ORTHO05D007078 1.2e-50 204.1 254 58.7
CSS0025068 Camellia sinensis var. sinensis HOM05D005866 ORTHO05D007078 1.2e-50 204.1 254 58.7
TWI74G1551 Tripterygium wilfordii HOM05D005866 ORTHO05D007078 1.2e-50 204.1 259 60.6
vmacro08602 Vaccinium macrocarpon HOM05D005866 ORTHO05D007078 1.6e-50 203.8 259 57.9
BcaC05g29639 Brassica carinata HOM05D005866 ORTHO05D007078 2.8e-50 203.0 253 60.5
Duzib128G1899 Durio zibethinus HOM05D005866 ORTHO05D007078 2.8e-50 203.0 262 62.2
AT3G09050 Arabidopsis thaliana HOM05D005866 ORTHO05D007078 4.7e-50 202.2 246 61.4
Peaxi162Scf00141g00718 Petunia axillaris HOM05D005866 ORTHO05D007078 8.1e-50 201.4 231 64.5
Ciclev10012537m.g Citrus clementina HOM05D005866 ORTHO05D007078 1.8e-49 200.3 256 61.7
A05p39790 Brassica napus HOM05D005866 ORTHO05D007078 3.1e-49 199.5 253 59.7
BraA05t22763Z Brassica rapa HOM05D005866 ORTHO05D007078 3.1e-49 199.5 253 59.7
Gohir.A01G225500 Gossypium hirsutum HOM05D005866 ORTHO05D007078 3.1e-49 199.5 259 61.0
Lj2C80T14 Lonicera japonica HOM05D005866 ORTHO05D007078 3.1e-49 199.5 235 49.8
BcaC09g48050 Brassica carinata HOM05D005866 ORTHO05D007078 5.2e-49 198.7 260 58.8
C05p58830 Brassica napus HOM05D005866 ORTHO05D007078 6.8e-49 198.4 253 60.1
AL3G20110 Arabidopsis lyrata HOM05D005866 ORTHO05D007078 1.2e-48 197.6 247 58.7
BolC5t34535H Brassica oleracea HOM05D005866 ORTHO05D007078 1.5e-48 197.2 253 60.1
Thhalv10021354m.g Eutrema salsugineum HOM05D005866 ORTHO05D007078 1.5e-48 197.2 228 63.6
Hund02698 Selenicereus undatus HOM05D005866 ORTHO05D007078 1.5e-48 197.2 265 45.7
PGSC0003DMG400011090 Solanum tuberosum HOM05D005866 ORTHO05D007078 1.5e-48 197.2 257 58.0
CARHR083410 Cardamine hirsuta HOM05D005866 ORTHO05D007078 2.0e-48 196.8 254 58.7
Sp3g07500 Schrenkiella parvula HOM05D005866 ORTHO05D007078 2.6e-48 196.4 253 58.5
Haze_20956 Corylus avellana HOM05D005866 ORTHO05D007078 3.4e-48 196.1 262 58.0
BraA01t04319Z Brassica rapa HOM05D005866 ORTHO05D007078 4.4e-48 195.7 227 52.9
Gohir.D01G215200 Gossypium hirsutum HOM05D005866 ORTHO05D007078 9.9e-48 194.5 259 48.6
ECA247G0127 Erigeron canadensis HOM05D005866 ORTHO05D007078 1.3e-47 194.1 246 45.1
Eucgr.B02792 Eucalyptus grandis HOM05D005866 ORTHO05D007078 2.2e-47 193.4 267 58.1
Lsat_1_v5_gn_9_36061 Lactuca sativa HOM05D005866 ORTHO05D007078 2.9e-47 193.0 261 52.9
Sopen10g034540 Solanum pennellii HOM05D005866 ORTHO05D007078 3.7e-47 192.6 257 56.8
BcaC09g48005 Brassica carinata HOM05D005866 ORTHO05D007078 1.1e-46 191.0 215 65.6
BolC1t05477H Brassica oleracea HOM05D005866 ORTHO05D007078 1.1e-46 191.0 227 63.9
Aa31LG3G1580 Aethionema arabicum HOM05D005866 ORTHO05D007078 1.4e-46 190.7 253 48.6
FvH4_6g11980 Fragaria vesca HOM05D005866 ORTHO05D007078 1.4e-46 190.7 258 53.1
THA.LOC104816219 Tarenaya hassleriana HOM05D005866 ORTHO05D007078 1.4e-46 190.7 212 70.8
FAN09G2814 Fragaria x ananassa HOM05D000012 ORTHO05D007078 1.9e-46 190.3 258 50.0
unitig_578.g15896 Utricularia gibba HOM05D005866 ORTHO05D007078 2.4e-46 189.9 231 58.9
FAN05G0379 Fragaria x ananassa HOM05D000012 ORTHO05D000567 3.2e-46 189.5 258 58.1
Glyma.07G145800 Glycine max HOM05D005866 ORTHO05D007078 3.2e-46 189.5 249 49.0
Nitab4.5_0004912g0060 Nicotiana tabacum HOM05D005866 ORTHO05D007078 3.2e-46 189.5 205 66.8
TAR623G0986 Trochodendron aralioides HOM05D005866 ORTHO05D007078 3.2e-46 189.5 246 56.1
FAN14G3397 Fragaria x ananassa HOM05D000012 ORTHO05D000567 9.2e-46 188.0 258 52.3
VMungo1383G0141 Vigna mungo HOM05D005866 ORTHO05D007078 1.2e-45 187.6 255 48.2
Lj1g0011685 Lotus japonicus HOM05D005866 ORTHO05D007078 1.6e-45 187.2 245 48.2
FAN02G1355 Fragaria x ananassa HOM05D005866 ORTHO05D007078 2.7e-45 186.4 258 52.7
ClCG04G007220 Citrullus lanatus HOM05D005866 ORTHO05D007078 4.6e-45 185.7 208 60.1
arahy.Tifrunner.gnm1.ann1.Q1H550 Arachis hypogaea HOM05D005866 ORTHO05D007078 6.0e-45 185.3 256 45.3
Phvul.008G107300 Phaseolus vulgaris HOM05D005866 ORTHO05D007078 6.0e-45 185.3 256 50.8
Glyma.18G197300 Glycine max HOM05D005866 ORTHO05D007078 7.8e-45 184.9 249 46.6
CsaV3_4G026010 Cucumis sativus L. HOM05D005866 ORTHO05D007078 1.7e-44 183.7 258 47.7
Nn2g11373 Nelumbo nucifera HOM05D005866 ORTHO05D007078 3.0e-44 183.0 233 58.8
FAN14G3518 Fragaria x ananassa HOM05D005866 ORTHO05D007078 6.6e-44 181.8 259 44.8
Medtr7g067000 Medicago truncatula HOM05D005866 ORTHO05D007078 8.6e-44 181.4 255 44.7
Cc06_g01630 Coffea canephora HOM05D005866 ORTHO05D007078 1.5e-43 180.6 231 59.3
Lj3g0009346 Lotus japonicus HOM05D005866 ORTHO05D007078 2.5e-43 179.9 239 47.7
Solyc10g085080.3 Solanum lycopersicum HOM05D005866 ORTHO05D007078 2.5e-43 179.9 273 53.1
Sopen09g007090 Solanum pennellii HOM05D005866 ORTHO05D007078 5.6e-43 178.7 253 56.1
Ca_07614_v3 Cicer arietinum L. HOM05D005866 ORTHO05D007078 7.3e-43 178.3 245 46.1
Psat3g131120 Pisum sativum HOM05D005866 ORTHO05D007078 7.3e-43 178.3 255 44.7
Aqoxy1G00701 Aquilegia oxysepala HOM05D005866 ORTHO05D007078 9.6e-43 177.9 245 45.3
MELO3C003227.2 Cucumis melo HOM05D005866 ORTHO05D007078 9.6e-43 177.9 208 58.7
Atru.chr8.2203 Acer truncatum HOM05D005866 ORTHO05D007078 1.2e-42 177.6 276 42.0
DCAR_015452 Daucus carota HOM05D005866 ORTHO05D007078 1.2e-42 177.6 260 55.4
TPR.G1580 Trifolium pratense HOM05D005866 ORTHO05D007078 1.2e-42 177.6 255 42.7
CANSAT35G0638 Cannabis sativa HOM05D005866 ORTHO05D007078 1.6e-42 177.2 258 57.0
Nitab4.5_0000008g0810 Nicotiana tabacum HOM05D005866 ORTHO05D007078 3.6e-42 176.0 264 55.3
Nitab4.5_0001837g0050 Nicotiana tabacum HOM05D005866 ORTHO05D007078 4.7e-42 175.6 262 56.1
COL.COLO4_14593 Corchorus olitorius HOM05D005866 ORTHO05D007078 8.1e-42 174.9 257 57.2
CAN.G1297.4 Capsicum annuum HOM05D005866 ORTHO05D007078 1.8e-41 173.7 248 56.5
CAN.G338.58 Capsicum annuum HOM05D005866 ORTHO05D007078 3.1e-41 172.9 263 55.1
Sed0005881 Sechium edule HOM05D005866 ORTHO05D007078 5.2e-41 172.2 229 53.7
arahy.Tifrunner.gnm1.ann1.LP8IIZ Arachis hypogaea HOM05D005866 ORTHO05D007078 1.5e-40 170.6 258 43.0
MSTRG.5595 Avicennia marina HOM05D005866 ORTHO05D007078 2.0e-40 170.2 249 55.4
Gorai.002G261300 Gossypium raimondii HOM05D005866 ORTHO05D007078 9.9e-40 167.9 259 56.4
Psat7g247600 Pisum sativum HOM05D005866 ORTHO05D007078 2.2e-39 166.8 249 44.2
BcaC09g48006 Brassica carinata HOM05D005866 ORTHO05D007078 3.8e-39 166.0 215 49.3
Nitab4.5_0000652g0170 Nicotiana tabacum HOM05D005866 ORTHO05D007078 4.9e-39 165.6 226 58.0
Os01g0853000 Oryza sativa ssp. japonica HOM05D005866 ORTHO05D007078 3.2e-38 162.9 246 51.6
EL10Ac6g13875 Beta vulgaris HOM05D005866 ORTHO05D007078 5.4e-38 162.2 128 60.9
PGSC0003DMG400020319 Solanum tuberosum HOM05D005866 ORTHO05D007078 9.3e-38 161.4 267 52.1
arahy.Tifrunner.gnm1.ann1.QNAF0W Arachis hypogaea HOM05D005866 ORTHO05D007078 1.6e-37 160.6 257 41.2
Zm00001eb367320 Zea mays HOM05D005866 ORTHO05D007078 1.6e-37 160.6 217 53.5
Phvul.010G008600 Phaseolus vulgaris HOM05D005866 ORTHO05D007078 7.8e-37 158.3 241 54.4
VMungo0331G1214 Vigna mungo HOM05D005866 ORTHO05D007078 1.7e-36 157.1 236 53.8
Medtr4g015010 Medicago truncatula HOM05D005866 ORTHO05D007078 3.0e-36 156.4 251 51.0
PSO384G0902 Papaver somniferum HOM05D005866 ORTHO05D007078 3.0e-36 156.4 259 52.1
Solyc09g014215.2 Solanum lycopersicum HOM05D005866 ORTHO05D007078 3.0e-36 156.4 270 51.1
Lj2P1203T18 Lonicera japonica HOM05D005866 ORTHO05D007078 1.1e-35 154.5 144 57.6
TPR.G5230 Trifolium pratense HOM05D005866 ORTHO05D007078 1.1e-35 154.5 252 52.8
Migut.J00221 Erythranthe guttata HOM05D005866 ORTHO05D007078 5.6e-35 152.1 262 51.5
Lalb_Chr07g0193301 Lupinus albus HOM05D005866 ORTHO05D007078 5.6e-35 152.1 238 43.3
RcHm_v2.0_Chr3g0463811 Rosa chinensis HOM05D005866 ORTHO05D007078 4.8e-34 149.1 141 55.3
Peaxi162Scf00009g01923 Petunia axillaris HOM05D005866 ORTHO05D007078 8.1e-34 148.3 237 55.7
TAR633G2503 Trochodendron aralioides HOM05D005866 ORTHO05D007078 1.8e-33 147.1 125 57.6
SGA_v2.0_scaffold85G26760 Striga asiatica HOM05D005866 ORTHO05D007078 3.1e-33 146.4 140 55.0
CDE03G0505 Ceratophyllum demersum HOM05D005866 ORTHO05D007078 6.9e-33 145.2 222 48.6
Actinidia05342 Actinidia chinensis HOM05D005866 ORTHO05D007078 4.4e-32 142.5 194 54.6
arahy.Tifrunner.gnm1.ann1.6JA19R Arachis hypogaea HOM05D005866 ORTHO05D007078 7.6e-32 141.7 215 41.9
ECA247G1841 Erigeron canadensis HOM05D005866 ORTHO05D007078 7.6e-32 141.7 194 44.3
Glyma.03G077300 Glycine max HOM05D005866 ORTHO05D007078 1.3e-31 141.0 241 52.7
arahy.Tifrunner.gnm1.ann1.T33YJ3 Arachis hypogaea HOM05D005866 ORTHO05D007078 4.6e-29 132.5 250 39.2
arahy.Tifrunner.gnm1.ann1.F83RTD Arachis hypogaea HOM05D005866 ORTHO05D007078 6.0e-29 132.1 250 39.2
PSO339G5866 Papaver somniferum HOM05D005866 ORTHO05D007078 2.3e-28 130.2 184 58.2
ATR0618G104 Amborella trichopoda HOM05D005866 ORTHO05D007078 2.2e-23 113.6 134 49.3
Actinidia01118 Actinidia chinensis HOM05D005866 ORTHO05D007078 6.0e-21 105.5 83 60.2
Dinv37082 Davidia involucrata HOM05D005866 ORTHO05D007078 4.2e-14 82.8 104 42.3
AagrBONN_evm.TU.Sc2ySwM_117.2545 Anthoceros agrestis HOM05D005866 ORTHO05D007078 9.3e-14 81.6 227 26.9
Pp3c5_19930 Physcomitrium patens HOM05D005866 ORTHO05D007078 1.6e-13 80.9 208 27.4
Mapoly0004s0086 Marchantia polymorpha HOM05D005866 ORTHO05D007078 3.5e-13 79.7 212 27.4
Ah.07g199780 Amaranthus hybridus HOM05D005866 ORTHO05D007078 6.0e-13 79.0 80 51.2
SEGI_33363 Sequoiadendron giganteum HOM05D005866 ORTHO05D007078 2.3e-12 77.0 202 26.2
SEGI_17473 Sequoiadendron giganteum HOM05D005866 ORTHO05D007078 6.3e-10 68.9 181 26.0
HanXRQChr10g0287001 Helianthus annuus HOM05D005866 ORTHO05D007078 6.9e-09 65.5 72 54.2
Lalb_Chr03g0043011 Lupinus albus HOM05D005866 ORTHO05D007078 2.0e-08 63.9 83 53.0
Actinidia01119 Actinidia chinensis HOM05D005866 ORTHO05D007078 1.0e-07 61.6 77 46.8
ATR0618G115 Amborella trichopoda HOM05D005866 ORTHO05D007078 1.7e-07 60.8 78 48.7
SMO143G0029 Selaginella moellendorffii HOM05D001879 ORTHO05D007648 1.7e-07 60.8 205 23.4
SGA_v2.0_scaffold1443G53951 Striga asiatica HOM05D005866 ORTHO05D007078 3.8e-07 59.7 86 47.7
Pp3c20_9600 Physcomitrium patens HOM05D005866 ORTHO05D007078 8.4e-07 58.5 228 24.1


User provided reference genes

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