Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc01g0006530 Simmondsia chinensis HOM05D007952 ORTHO05D009823 3.7e-51 204.5 100 100.0
Lsat_1_v5_gn_4_99801 Lactuca sativa HOM05D007952 ORTHO05D009823 1.7e-48 195.7 100 96.0
PGSC0003DMG400028997 Solanum tuberosum HOM05D007952 ORTHO05D009823 1.7e-48 195.7 100 96.0
PGSC0003DMG400035391 Solanum tuberosum HOM05D007952 ORTHO05D009823 1.7e-48 195.7 100 96.0
Oeu020621.1 Olea europaea HOM05D007952 ORTHO05D009823 1.2e-46 189.5 100 92.0
Lsat_1_v5_gn_4_63021 Lactuca sativa HOM05D007952 ORTHO05D009823 2.8e-46 188.3 99 91.9
Nn5g29057 Nelumbo nucifera HOM05D007952 ORTHO05D009823 3.6e-46 188.0 100 94.0
ECA247G0757 Erigeron canadensis HOM05D000006 ORTHO05D000001 8.1e-46 186.8 99 91.9
Medtr0002s0270 Medicago truncatula HOM05D007952 ORTHO05D009823 8.1e-46 186.8 100 92.0
Nn029s41587 Nelumbo nucifera HOM05D007952 ORTHO05D009823 9.9e-44 179.9 124 76.6
Nn064s42224 Nelumbo nucifera HOM05D007952 ORTHO05D009823 9.9e-44 179.9 124 76.6
Nn206s45068 Nelumbo nucifera HOM05D007952 ORTHO05D009823 9.9e-44 179.9 124 76.6
Nn219s45283 Nelumbo nucifera HOM05D007952 ORTHO05D009823 9.9e-44 179.9 124 76.6
CSS0039937 Camellia sinensis var. sinensis HOM05D007952 ORTHO05D009823 3.7e-43 177.9 114 81.6
Atru.chr13.2454 Acer truncatum HOM05D007952 ORTHO05D009823 7.1e-42 173.7 112 79.5
ECA246G1432 Erigeron canadensis HOM05D007952 ORTHO05D009823 3.9e-40 167.9 100 86.0
Sc04g0003580 Simmondsia chinensis HOM05D007952 ORTHO05D009823 8.6e-40 166.8 94 86.2
EL10Ac6g15366 Beta vulgaris HOM05D007952 ORTHO05D009823 1.8e-37 159.1 88 88.6
arahy.Tifrunner.gnm1.ann1.RE2PS1 Arachis hypogaea HOM05D007952 ORTHO05D009823 3.1e-37 158.3 78 96.2
arahy.Tifrunner.gnm1.ann1.GIFH8E Arachis hypogaea HOM05D007952 ORTHO05D009823 6.8e-37 157.1 78 96.2
arahy.Tifrunner.gnm1.ann1.TT5YJH Arachis hypogaea HOM05D007952 ORTHO05D009823 8.9e-37 156.8 81 91.4
MBI08_g48227_MAGBIO Magnolia biondii HOM05D007952 ORTHO05D009823 8.4e-35 150.2 81 91.4
Peaxi162Scf00987g00215 Petunia axillaris HOM05D007952 ORTHO05D009823 8.4e-35 150.2 81 91.4
unitig_87.g27919 Utricularia gibba HOM05D007952 ORTHO05D009823 8.4e-35 150.2 81 91.4
unitig_87.g28035 Utricularia gibba HOM05D007952 ORTHO05D009823 8.4e-35 150.2 81 91.4
unitig_91.g26519 Utricularia gibba HOM05D007952 ORTHO05D009823 8.4e-35 150.2 81 91.4
arahy.Tifrunner.gnm1.ann1.0845WK Arachis hypogaea HOM05D007952 ORTHO05D009823 9.2e-34 146.7 97 77.3
arahy.Tifrunner.gnm1.ann1.88RRM9 Arachis hypogaea HOM05D007952 ORTHO05D009823 9.2e-34 146.7 97 77.3
EL10As10g23962 Beta vulgaris HOM05D007952 ORTHO05D009823 2.1e-33 145.6 81 90.1
Medtr3g035635 Medicago truncatula HOM05D007952 ORTHO05D009823 2.7e-33 145.2 82 87.8
arahy.Tifrunner.gnm1.ann1.XUIM66 Arachis hypogaea HOM05D007952 ORTHO05D009823 3.5e-33 144.8 100 74.0
Migut.D01400 Erythranthe guttata HOM05D007952 ORTHO05D009823 6.0e-33 144.1 72 95.8
arahy.Tifrunner.gnm1.ann1.J5KLX8 Arachis hypogaea HOM05D007952 ORTHO05D009823 1.3e-32 142.9 115 66.1
arahy.Tifrunner.gnm1.ann1.HDQ4NC Arachis hypogaea HOM05D007952 ORTHO05D009823 2.3e-32 142.1 97 75.3
BcaB02g11353 Brassica carinata HOM05D007952 ORTHO05D009823 3.0e-32 141.7 75 90.7
Lj2C1239G84 Lonicera japonica HOM05D007952 ORTHO05D009823 6.6e-32 140.6 73 94.5
Lj1g0013448 Lotus japonicus HOM05D007952 ORTHO05D009823 6.6e-32 140.6 82 85.4
BolSC44t60812H Brassica oleracea HOM05D007952 ORTHO05D009823 1.9e-31 139.0 69 95.7
Atru.chr9.365 Acer truncatum HOM05D007952 ORTHO05D009823 4.3e-31 137.9 74 90.5
Sc23g0003910 Simmondsia chinensis HOM05D007952 ORTHO05D009823 2.1e-30 135.6 85 81.2
arahy.Tifrunner.gnm1.ann1.PHD7EH Arachis hypogaea HOM05D007952 ORTHO05D009823 8.1e-30 133.7 78 82.1
Medtr4g006040 Medicago truncatula HOM05D008037 ORTHO05D009823 2.9e-27 125.2 73 84.9
SEGI_38349 Sequoiadendron giganteum HOM05D007952 ORTHO05D009823 3.8e-27 124.8 69 89.9
SEGI_08440 Sequoiadendron giganteum HOM05D007952 ORTHO05D009823 3.2e-26 121.7 69 88.4
SEGI_09919 Sequoiadendron giganteum HOM05D007952 ORTHO05D009823 3.2e-26 121.7 69 88.4
SEGI_21867 Sequoiadendron giganteum HOM05D007952 ORTHO05D009823 3.2e-26 121.7 69 88.4
Nitab4.5_0004552g0010 Nicotiana tabacum HOM05D000796 ORTHO05D009823 1.2e-25 119.8 89 71.9
Nn6g32821 Nelumbo nucifera HOM05D007952 ORTHO05D009823 1.6e-25 119.4 61 93.4
Nn6g32826 Nelumbo nucifera HOM05D007952 ORTHO05D009823 1.6e-25 119.4 61 93.4
Sc21g0004590 Simmondsia chinensis HOM05D007952 ORTHO05D009823 2.1e-25 119.0 91 67.0
ECA232G1868 Erigeron canadensis HOM05D000002 ORTHO05D002065 3.0e-24 115.2 57 93.0
Psat0ss8367g0160 Pisum sativum HOM05D001387 ORTHO05D001250 1.1e-23 113.2 74 73.0
Oeu022560.1 Olea europaea HOM05D007952 ORTHO05D009823 1.9e-23 112.5 81 71.6
Hma1.2p1_0594F.1_g185798 Hydrangea macrophylla HOM05D007952 ORTHO05D009823 2.5e-23 112.1 56 94.6
Nn6g33130 Nelumbo nucifera HOM05D007952 ORTHO05D009823 5.6e-23 110.9 56 94.6
Sopen11g014330 Solanum pennellii HOM05D000743 ORTHO05D000580 4.0e-21 104.8 61 83.6
DCAR_004958 Daucus carota HOM05D007952 ORTHO05D009823 5.8e-20 100.9 52 92.3
Ca_02733_v3 Cicer arietinum L. HOM05D008016 ORTHO05D009823 9.9e-20 100.1 66 75.8
CAN.G262.4 Capsicum annuum HOM05D007952 ORTHO05D009823 4.9e-19 97.8 65 73.8
Lj4g0016112 Lotus japonicus HOM05D007952 ORTHO05D009823 8.4e-19 97.1 60 81.7
BcaC04g20704 Brassica carinata HOM05D007952 ORTHO05D009823 3.2e-18 95.1 69 73.9
Nitab4.5_0007400g0010 Nicotiana tabacum HOM05D007952 ORTHO05D009823 5.4e-18 94.4 75 65.3
Potri.005G037850 Populus trichocarpa HOM05D007952 ORTHO05D009823 3.0e-16 88.6 57 77.2
CAN.G1186.47 Capsicum annuum HOM05D007952 ORTHO05D009823 3.9e-16 88.2 56 76.8
Peaxi162Scf00002g00723 Petunia axillaris HOM05D007952 ORTHO05D009823 6.7e-16 87.4 54 74.1
CBR_g12953 Chara braunii HOM05D000019 ORTHO05D000048 3.3e-15 85.1 55 74.5
Oeu012768.1 Olea europaea HOM05D007952 ORTHO05D009823 6.2e-14 80.9 55 74.5
Oeu000007.1 Olea europaea HOM05D007952 ORTHO05D009823 5.3e-13 77.8 63 63.5
arahy.Tifrunner.gnm1.ann1.B37VQ6 Arachis hypogaea HOM05D007952 ORTHO05D009823 1.2e-12 76.6 64 62.5
Nitab4.5_0007025g0020 Nicotiana tabacum HOM05D001226 ORTHO05D009823 3.4e-12 75.1 58 65.5
SEGI_20804 Sequoiadendron giganteum HOM05D007952 ORTHO05D009823 2.9e-11 72.0 51 72.5
BolSC91t61267H Brassica oleracea HOM05D007952 ORTHO05D009823 6.5e-11 70.9 52 75.0
SEGI_02200 Sequoiadendron giganteum HOM05D007952 ORTHO05D009823 6.5e-11 70.9 53 67.9
TPR.G32110 Trifolium pratense HOM05D006259 ORTHO05D007804 5.5e-10 67.8 70 55.7
ECA236G0169 Erigeron canadensis HOM05D000353 ORTHO05D000174 2.3e-08 62.4 58 60.3
SEGI_35056 Sequoiadendron giganteum HOM05D007952 ORTHO05D009823 4.3e-07 58.2 28 89.3
arahy.Tifrunner.gnm1.ann1.60YYL0 Arachis hypogaea HOM05D010190 ORTHO05D009823 1.6e-06 56.2 100 41.0
arahy.Tifrunner.gnm1.ann1.9E5EUV Arachis hypogaea HOM05D000388 ORTHO05D000473 1.6e-06 56.2 62 54.8
Actinidia30703 Actinidia chinensis HOM05D001966 ORTHO05D009823 2.1e-06 55.8 65 50.8
Nn031s41604 Nelumbo nucifera HOM05D007952 ORTHO05D009823 2.8e-06 55.5 27 96.3
Nn233s45560 Nelumbo nucifera HOM05D007952 ORTHO05D009823 2.8e-06 55.5 27 96.3
Nn241s45689 Nelumbo nucifera HOM05D007952 ORTHO05D009823 2.8e-06 55.5 27 96.3
Nn6g33131 Nelumbo nucifera HOM05D007952 ORTHO05D009823 2.8e-06 55.5 27 96.3
Nn6g33484 Nelumbo nucifera HOM05D007952 ORTHO05D009823 2.8e-06 55.5 27 96.3
Oeu011728.3 Olea europaea HOM05D002681 ORTHO05D003372 2.8e-06 55.5 27 96.3
Sed0000469 Sechium edule HOM05D010190 ORTHO05D009823 2.8e-06 55.5 27 96.3
Sed0006309 Sechium edule HOM05D010190 ORTHO05D009823 2.8e-06 55.5 27 96.3
CAN.G8.21 Capsicum annuum HOM05D000580 ORTHO05D001362 6.2e-06 54.3 34 73.5
BolC6t36075H Brassica oleracea HOM05D000963 ORTHO05D009823 8.2e-06 53.9 29 79.3


User provided reference genes

Program Settings