Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc01g0006150 Simmondsia chinensis HOM05D003667 ORTHO05D004397 7.0e-99 364.0 189 100.0
Actinidia07960 Actinidia chinensis HOM05D003667 ORTHO05D004397 5.8e-69 264.6 173 77.5
Actinidia06203 Actinidia chinensis HOM05D003667 ORTHO05D004397 2.2e-68 262.7 173 76.9
Hund10761 Selenicereus undatus HOM05D003667 ORTHO05D004397 1.1e-67 260.4 177 76.8
Thecc.05G244000 Theobroma cacao HOM05D003667 ORTHO05D004397 2.4e-67 259.2 174 75.3
CSS0013214 Camellia sinensis var. sinensis HOM05D003667 ORTHO05D004397 3.2e-67 258.8 172 76.7
CSS0004374 Camellia sinensis var. sinensis HOM05D003667 ORTHO05D004397 4.1e-67 258.5 172 76.7
Duzib106G0749 Durio zibethinus HOM05D003667 ORTHO05D004397 2.7e-66 255.8 173 75.7
Gohir.A11G231200 Gossypium hirsutum HOM05D003667 ORTHO05D004397 2.7e-66 255.8 174 74.7
Gohir.D11G242600 Gossypium hirsutum HOM05D003667 ORTHO05D004397 3.5e-66 255.4 174 74.7
Gorai.007G256800 Gossypium raimondii HOM05D003667 ORTHO05D004397 3.5e-66 255.4 174 74.7
COL.COLO4_28620 Corchorus olitorius HOM05D003667 ORTHO05D004397 3.9e-65 251.9 174 73.6
Hma1.2p1_0106F.1_g051140 Hydrangea macrophylla HOM05D003667 ORTHO05D004397 5.0e-65 251.5 172 74.4
TAR623G0153 Trochodendron aralioides HOM05D003667 ORTHO05D004397 6.6e-65 251.1 174 74.1
Lj2A112G40 Lonicera japonica HOM05D003667 ORTHO05D004397 1.9e-64 249.6 174 73.6
Ciclev10022078m.g Citrus clementina HOM05D003667 ORTHO05D004397 3.3e-64 248.8 174 70.7
CANSAT78G1932 Cannabis sativa HOM05D003667 ORTHO05D004397 1.2e-63 246.9 172 73.3
Manes.09G137700 Manihot esculenta HOM05D003667 ORTHO05D004397 1.2e-63 246.9 174 71.8
MBI05_g12099_MAGBIO Magnolia biondii HOM05D003667 ORTHO05D004397 2.8e-63 245.7 174 69.0
ClCG04G005470 Citrullus lanatus HOM05D003667 ORTHO05D004397 3.6e-63 245.4 172 72.7
ClCG02G007830 Citrullus lanatus HOM05D003667 ORTHO05D004397 4.7e-63 245.0 172 72.7
CsaV3_4G012110 Cucumis sativus L. HOM05D003667 ORTHO05D004397 4.7e-63 245.0 172 72.1
Dinv05568 Davidia involucrata HOM05D003667 ORTHO05D004397 4.7e-63 245.0 173 72.8
Rhsim13G0206500 Rhododendron simsii HOM05D003667 ORTHO05D004397 2.3e-62 242.7 172 72.7
GSVIVG01029952001 Vitis vinifera HOM05D003667 ORTHO05D004397 2.3e-62 242.7 175 70.9
Ah.02g128310 Amaranthus hybridus HOM05D003667 ORTHO05D004397 3.1e-62 242.3 173 74.0
Eucgr.K01520 Eucalyptus grandis HOM05D003667 ORTHO05D004397 5.2e-62 241.5 174 71.8
FAN11G0144 Fragaria x ananassa HOM05D003667 ORTHO05D004397 5.2e-62 241.5 172 71.5
Nn6g34578 Nelumbo nucifera HOM05D003667 ORTHO05D004397 5.2e-62 241.5 174 71.3
Sabra13G0056100 Salix brachista HOM05D003667 ORTHO05D004397 5.2e-62 241.5 172 71.5
MELO3C008823.2 Cucumis melo HOM05D003667 ORTHO05D004397 8.9e-62 240.7 172 70.3
FvH4_3g25040 Fragaria vesca HOM05D003667 ORTHO05D004397 1.5e-61 240.0 172 70.9
Potri.013G062900 Populus trichocarpa HOM05D003667 ORTHO05D004397 2.6e-61 239.2 172 70.3
MBI17_g12494_MAGBIO Magnolia biondii HOM05D003667 ORTHO05D004397 4.4e-61 238.4 174 69.5
FAN21G0540 Fragaria x ananassa HOM05D003667 ORTHO05D004397 5.8e-61 238.0 172 70.3
FAN25G1089 Fragaria x ananassa HOM05D003667 ORTHO05D004397 1.3e-60 236.9 172 69.8
Atru.chr2.1481 Acer truncatum HOM05D003667 ORTHO05D004397 2.2e-60 236.1 171 69.6
Nn7g37255 Nelumbo nucifera HOM05D003667 ORTHO05D004397 2.2e-60 236.1 171 70.8
RcHm_v2.0_Chr5g0045181 Rosa chinensis HOM05D003667 ORTHO05D004397 3.7e-60 235.3 172 69.8
TWI38G1994 Tripterygium wilfordii HOM05D003667 ORTHO05D004397 3.7e-60 235.3 174 68.4
Sed0010728 Sechium edule HOM05D003667 ORTHO05D004397 2.4e-59 232.6 175 70.3
PSO170G5262 Papaver somniferum HOM05D003667 ORTHO05D004397 3.2e-59 232.3 174 67.2
PSO357G0141 Papaver somniferum HOM05D003667 ORTHO05D004397 7.0e-59 231.1 174 67.2
Aqoxy1G00535 Aquilegia oxysepala HOM05D003667 ORTHO05D004397 1.7e-57 226.5 172 67.4
MD02G1195300 Malus domestica HOM05D003667 ORTHO05D004397 1.7e-57 226.5 172 68.6
Prupe.2G153200 Prunus persica HOM05D003667 ORTHO05D004397 2.3e-57 226.1 172 68.0
Sed0016620 Sechium edule HOM05D003667 ORTHO05D004397 5.1e-57 224.9 171 67.8
Solyc07g047720.3 Solanum lycopersicum HOM05D003667 ORTHO05D004397 3.3e-56 222.2 178 66.3
Sopen07g024170 Solanum pennellii HOM05D003667 ORTHO05D004397 5.6e-56 221.5 176 67.0
TWI38G1198 Tripterygium wilfordii HOM05D003667 ORTHO05D004397 5.6e-56 221.5 172 66.3
HanXRQChr07g0197181 Helianthus annuus HOM05D003667 ORTHO05D004397 2.1e-55 219.5 174 64.4
PGSC0003DMG400006127 Solanum tuberosum HOM05D003667 ORTHO05D004397 4.7e-55 218.4 185 63.8
CAN.G992.19 Capsicum annuum HOM05D003667 ORTHO05D004397 8.1e-55 217.6 182 64.3
Cpa.g.sc28.13 Carica papaya HOM05D003667 ORTHO05D004397 1.1e-54 217.2 177 64.4
Phvul.006G027100 Phaseolus vulgaris HOM05D003667 ORTHO05D004397 1.1e-54 217.2 172 67.4
PSO675G2224 Papaver somniferum HOM05D003667 ORTHO05D004397 1.4e-54 216.9 170 64.7
Nitab4.5_0001774g0040 Nicotiana tabacum HOM05D003667 ORTHO05D004397 3.1e-54 215.7 182 63.2
Oeu035461.1 Olea europaea HOM05D003667 ORTHO05D004397 4.0e-54 215.3 177 62.1
PSO541G6155 Papaver somniferum HOM05D003667 ORTHO05D004397 5.2e-54 214.9 170 63.5
TPR.G14738 Trifolium pratense HOM05D003667 ORTHO05D004397 5.2e-54 214.9 174 67.2
Medtr3g450200 Medicago truncatula HOM05D003667 ORTHO05D004397 6.8e-54 214.5 173 66.5
Ca_13917_v3 Cicer arietinum L. HOM05D003667 ORTHO05D004397 8.9e-54 214.2 173 66.5
CDE10G1021 Ceratophyllum demersum HOM05D003667 ORTHO05D004397 1.5e-53 213.4 174 63.8
Glyma.08G304700 Glycine max HOM05D003667 ORTHO05D004397 1.5e-53 213.4 173 65.3
Nitab4.5_0001741g0020 Nicotiana tabacum HOM05D003667 ORTHO05D004397 3.4e-53 212.2 177 65.0
CiPaw.03G011100 Carya illinoinensis HOM05D003667 ORTHO05D004397 4.4e-53 211.8 169 68.0
VMungo0540G2144 Vigna mungo HOM05D003667 ORTHO05D004397 7.5e-53 211.1 172 66.3
AT2G36900 Arabidopsis thaliana HOM05D003667 ORTHO05D004397 1.3e-52 210.3 174 60.3
AL4G33130 Arabidopsis lyrata HOM05D003667 ORTHO05D004397 2.2e-52 209.5 172 60.5
Psat5g209680 Pisum sativum HOM05D003667 ORTHO05D004397 2.2e-52 209.5 173 65.3
THA.LOC104823778 Tarenaya hassleriana HOM05D003667 ORTHO05D004397 2.2e-52 209.5 173 63.0
Lj2g0005685 Lotus japonicus HOM05D003667 ORTHO05D004397 2.9e-52 209.1 172 68.6
Carub.0004s1876 Capsella rubella HOM05D003667 ORTHO05D004397 3.7e-52 208.8 172 60.5
PGSC0003DMG400018832 Solanum tuberosum HOM05D003667 ORTHO05D004397 3.7e-52 208.8 177 62.7
Glyma.18G114700 Glycine max HOM05D003667 ORTHO05D004397 4.9e-52 208.4 172 64.5
SEGI_40073 Sequoiadendron giganteum HOM05D003667 ORTHO05D004397 4.9e-52 208.4 178 61.8
MSTRG.26557 Avicennia marina HOM05D003667 ORTHO05D004397 1.4e-51 206.8 178 61.2
arahy.Tifrunner.gnm1.ann1.FV18MX Arachis hypogaea HOM05D003667 ORTHO05D004397 1.9e-51 206.5 175 64.6
arahy.Tifrunner.gnm1.ann1.7QGR70 Arachis hypogaea HOM05D003667 ORTHO05D004397 4.1e-51 205.3 175 64.0
Thhalv10017208m.g Eutrema salsugineum HOM05D003667 ORTHO05D004397 4.1e-51 205.3 171 60.8
CARHR131380 Cardamine hirsuta HOM05D003667 ORTHO05D004397 5.4e-51 204.9 173 59.5
arahy.Tifrunner.gnm1.ann1.VNW58P Arachis hypogaea HOM05D003667 ORTHO05D004397 7.1e-51 204.5 175 64.0
Haze_14026 Corylus avellana HOM05D003667 ORTHO05D004397 7.1e-51 204.5 170 66.5
Sp4g19200 Schrenkiella parvula HOM05D003667 ORTHO05D004397 1.6e-50 203.4 172 58.7
BraA05t19858Z Brassica rapa HOM05D003667 ORTHO05D004397 4.6e-50 201.8 172 58.7
Zm00001eb052810 Zea mays HOM05D003667 ORTHO05D004397 4.6e-50 201.8 179 57.5
A05p08960 Brassica napus HOM05D003667 ORTHO05D004397 6.0e-50 201.4 172 58.7
C04p11070 Brassica napus HOM05D003667 ORTHO05D004397 6.0e-50 201.4 172 58.7
BolC4t22755H Brassica oleracea HOM05D003667 ORTHO05D004397 6.0e-50 201.4 172 58.7
BcaB02g09321 Brassica carinata HOM05D003667 ORTHO05D004397 2.3e-49 199.5 172 58.7
Thhalv10014611m.g Eutrema salsugineum HOM05D003667 ORTHO05D004397 3.9e-49 198.7 174 58.6
Aa31LG6G14320 Aethionema arabicum HOM05D003667 ORTHO05D004397 6.6e-49 198.0 174 56.3
TPR.G8769 Trifolium pratense HOM05D003667 ORTHO05D004397 6.6e-49 198.0 172 61.6
Carub.0008s1055 Capsella rubella HOM05D003667 ORTHO05D004397 1.5e-48 196.8 170 60.0
Migut.L01870 Erythranthe guttata HOM05D003667 ORTHO05D004397 2.5e-48 196.1 179 58.7
AL8G24670 Arabidopsis lyrata HOM05D003667 ORTHO05D004397 1.2e-47 193.7 170 58.2
Cc03_g11050 Coffea canephora HOM05D003667 ORTHO05D004397 2.8e-47 192.6 170 58.2
Lalb_Chr17g0348151 Lupinus albus HOM05D003667 ORTHO05D004397 2.8e-47 192.6 175 61.1
HPP92_027259 Vanilla planifolia HOM05D003667 ORTHO05D004397 2.8e-47 192.6 133 71.4
CARHR257860 Cardamine hirsuta HOM05D003667 ORTHO05D004397 3.6e-47 192.2 170 57.1
AT5G50440 Arabidopsis thaliana HOM05D003667 ORTHO05D004397 1.1e-46 190.7 170 57.1
Os03g0655200 Oryza sativa ssp. japonica HOM05D003667 ORTHO05D004397 1.1e-46 190.7 177 55.9
Lsat_1_v5_gn_6_31701 Lactuca sativa HOM05D003667 ORTHO05D004397 2.4e-46 189.5 136 72.1
Ca_06238_v3 Cicer arietinum L. HOM05D003667 ORTHO05D004397 4.0e-46 188.7 172 59.3
HanXRQChr14g0453611 Helianthus annuus HOM05D003667 ORTHO05D004397 6.8e-46 188.0 140 68.6
Psat2g018160 Pisum sativum HOM05D003667 ORTHO05D004397 6.8e-46 188.0 172 59.3
AUR62008662 Chenopodium quinoa HOM05D003667 ORTHO05D004397 1.2e-45 187.2 138 73.2
ECA238G3478 Erigeron canadensis HOM05D003667 ORTHO05D004397 2.6e-45 186.0 138 68.8
Medtr5g090520 Medicago truncatula HOM05D003667 ORTHO05D004397 3.4e-45 185.7 172 57.6
Lsat_1_v5_gn_2_103600 Lactuca sativa HOM05D003667 ORTHO05D004397 9.9e-45 184.1 140 67.9
unitig_8.g4943 Utricularia gibba HOM05D003667 ORTHO05D004397 1.3e-44 183.7 179 54.2
Peaxi162Scf00776g00027 Petunia axillaris HOM05D003667 ORTHO05D004397 1.7e-44 183.3 172 58.1
Dinv25059 Davidia involucrata HOM05D003667 ORTHO05D004397 1.4e-43 180.3 122 75.4
Mapoly0001s0234 Marchantia polymorpha HOM05D003667 ORTHO05D004397 5.4e-43 178.3 169 55.6
SGA_v2.0_scaffold41G15803 Striga asiatica HOM05D003667 ORTHO05D004397 7.8e-42 174.5 221 48.4
EL10Ac7g17477 Beta vulgaris HOM05D003667 ORTHO05D004397 1.3e-41 173.7 139 67.6
SGA_v2.0_scaffold392G50657 Striga asiatica HOM05D003667 ORTHO05D004397 6.6e-41 171.4 202 50.0
SMO358G0442 Selaginella moellendorffii HOM05D003667 ORTHO05D004397 2.5e-40 169.5 175 52.0
Pp3c7_13000 Physcomitrium patens HOM05D003667 ORTHO05D004397 6.9e-38 161.4 190 46.3
Oeu003870.1 Olea europaea HOM05D003667 ORTHO05D004397 9.0e-38 161.0 132 65.2
Pp3c11_11980 Physcomitrium patens HOM05D003667 ORTHO05D004397 1.5e-37 160.2 187 46.5
DCAR_013483 Daucus carota HOM05D003667 ORTHO05D004397 2.6e-37 159.5 109 73.4
AagrBONN_evm.TU.Sc2ySwM_362.869 Anthoceros agrestis HOM05D003667 ORTHO05D004397 6.4e-36 154.8 181 47.0
Prupe.7G022400 Prunus persica HOM05D003667 ORTHO05D004397 2.4e-35 152.9 109 71.6
AagrBONN_evm.TU.Sc2ySwM_117.3822 Anthoceros agrestis HOM05D003667 ORTHO05D004397 7.1e-35 151.4 177 46.9
CDE10G1036 Ceratophyllum demersum HOM05D003667 ORTHO05D004397 1.3e-31 140.6 123 60.2
AUR62033108 Chenopodium quinoa HOM05D003667 ORTHO05D004397 1.6e-31 140.2 90 81.1
CiPaw.04G007600 Carya illinoinensis HOM05D003667 ORTHO05D004397 2.1e-31 139.8 109 70.6
BcaC02g11814 Brassica carinata HOM05D003667 ORTHO05D004397 4.8e-31 138.7 109 60.6
CSS0044789 Camellia sinensis var. sinensis HOM05D003667 ORTHO05D004397 8.1e-31 137.9 90 78.9
Lj6g0022641 Lotus japonicus HOM05D003667 ORTHO05D004397 3.1e-30 136.0 109 67.9
arahy.Tifrunner.gnm1.ann1.B982CP Arachis hypogaea HOM05D003667 ORTHO05D004397 6.9e-30 134.8 175 50.9
Rhsim02G0195900 Rhododendron simsii HOM05D003667 ORTHO05D004397 2.0e-29 133.3 90 75.6
AagrBONN_evm.TU.Sc2ySwM_368.3326 Anthoceros agrestis HOM05D003667 ORTHO05D004397 3.4e-29 132.5 182 43.4
QL07p048797 Quercus lobata HOM05D000002 ORTHO05D000001 7.9e-26 121.3 179 46.9
Rhsim02G0194700 Rhododendron simsii HOM05D003667 ORTHO05D004397 4.3e-24 115.5 81 70.4
Rhsim02G0195800 Rhododendron simsii HOM05D003667 ORTHO05D004397 4.3e-24 115.5 81 70.4
arahy.Tifrunner.gnm1.ann1.K13S6W Arachis hypogaea HOM05D004599 ORTHO05D005564 2.8e-23 112.8 145 49.7
Cre12.g554200 Chlamydomonas reinhardtii HOM05D003667 ORTHO05D004397 1.4e-22 110.5 171 38.6
Actinidia03933 Actinidia chinensis HOM05D003667 ORTHO05D004397 1.2e-21 107.5 113 54.0
MSTRG.10431 Avicennia marina HOM05D003667 ORTHO05D004397 2.6e-21 106.3 91 59.3
CAN.G1036.8 Capsicum annuum HOM05D003667 ORTHO05D004397 2.6e-21 106.3 148 45.3
arahy.Tifrunner.gnm1.ann1.835HL2 Arachis hypogaea HOM05D004313 ORTHO05D004397 5.8e-21 105.1 98 56.1
Actinidia37807 Actinidia chinensis HOM05D003667 ORTHO05D004397 7.6e-21 104.8 173 42.2
Ah.08g213160 Amaranthus hybridus HOM05D003667 ORTHO05D004397 3.8e-20 102.4 63 84.1
unitig_578.g16057 Utricularia gibba HOM05D003667 ORTHO05D004397 6.4e-20 101.7 113 51.3
Solyc05g040100.4 Solanum lycopersicum HOM05D003667 ORTHO05D004397 1.4e-19 100.5 81 63.0
CSS0038188 Camellia sinensis var. sinensis HOM05D003667 ORTHO05D004397 5.5e-19 98.6 82 63.4
Oeu063104.1 Olea europaea HOM05D003667 ORTHO05D004397 9.3e-19 97.8 89 59.6
MCO05G601 Micromonas commoda HOM05D003667 ORTHO05D004397 4.6e-18 95.5 174 35.1
Nitab4.5_0002669g0010 Nicotiana tabacum HOM05D003667 ORTHO05D004397 1.3e-17 94.0 94 55.3
Nitab4.5_0001701g0060 Nicotiana tabacum HOM05D003667 ORTHO05D004397 1.8e-17 93.6 172 37.8
Ah.08g213170 Amaranthus hybridus HOM05D003667 ORTHO05D004397 2.5e-16 89.7 82 56.1
arahy.Tifrunner.gnm1.ann1.SS7A45 Arachis hypogaea HOM05D000726 ORTHO05D004397 3.3e-16 89.4 105 51.4
PRCOL_00002098 Prasinoderma coloniale HOM05D003667 ORTHO05D004397 4.3e-16 89.0 170 36.5
arahy.Tifrunner.gnm1.ann1.SJAT5A Arachis hypogaea HOM05D003667 ORTHO05D003672 7.4e-16 88.2 98 52.0
Lalb_Chr10g0106511 Lupinus albus HOM05D003667 ORTHO05D004397 1.4e-14 84.0 89 53.9
Haze_20440 Corylus avellana HOM05D003667 ORTHO05D004397 9.0e-14 81.3 62 72.6
BcaC02g10601 Brassica carinata HOM05D003667 ORTHO05D004397 1.7e-12 77.0 132 35.6
Cfa017699 Carpinus fangiana HOM05D003667 ORTHO05D004397 2.2e-12 76.6 62 69.4
Lalb_Chr10g0106501 Lupinus albus HOM05D003667 ORTHO05D004397 4.9e-12 75.5 62 66.1
VMungo0720G0063 Vigna mungo HOM05D003667 ORTHO05D004397 1.4e-11 73.9 75 52.0
C04p25660 Brassica napus HOM05D003667 ORTHO05D004397 2.1e-10 70.1 64 57.8
C05p50890 Brassica napus HOM05D003667 ORTHO05D004397 2.1e-10 70.1 64 57.8
Solyc05g040090.1 Solanum lycopersicum HOM05D003667 ORTHO05D004397 2.7e-10 69.7 80 46.2
FvH4_3g32534 Fragaria vesca HOM05D003667 ORTHO05D004397 5.1e-09 65.5 56 67.9
COL.COLO4_28622 Corchorus olitorius HOM05D003667 ORTHO05D004397 6.7e-09 65.1 51 66.7
BcaB06g28959 Brassica carinata HOM05D003667 ORTHO05D004397 4.3e-08 62.4 84 46.4
HanXRQChr04g0115761 Helianthus annuus HOM05D003667 ORTHO05D004397 5.7e-08 62.0 49 59.2
Medtr1g102820 Medicago truncatula HOM05D003667 ORTHO05D004397 1.3e-07 60.8 60 58.3
Rhsim02G0196100 Rhododendron simsii HOM05D000056 ORTHO05D000019 3.7e-07 59.3 53 58.5
BNapus_Darmor_BZH_scaffold_271p00010 Brassica napus HOM05D003667 ORTHO05D004397 9.0e-06 54.7 53 54.7


User provided reference genes

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