Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc01g0006090 Simmondsia chinensis HOM05D006875 ORTHO05D008416 4.7e-91 337.8 167 100.0
Hund14386 Selenicereus undatus HOM05D006875 ORTHO05D008416 7.9e-46 187.6 178 60.1
EL10Ac5g11986 Beta vulgaris HOM05D006875 ORTHO05D008416 4.3e-44 181.8 172 59.3
Ah.12g055650 Amaranthus hybridus HOM05D006875 ORTHO05D008416 1.2e-38 163.7 176 58.5
Dinv29039 Davidia involucrata HOM05D006875 ORTHO05D008416 5.7e-36 154.8 168 52.4
CSS0027486 Camellia sinensis var. sinensis HOM05D006875 ORTHO05D008416 6.3e-35 151.4 188 50.5
Nitab4.5_0000109g0180 Nicotiana tabacum HOM05D006875 ORTHO05D008416 4.1e-34 148.7 173 51.4
MSTRG.13901 Avicennia marina HOM05D006875 ORTHO05D008416 3.4e-33 145.6 187 50.8
PGSC0003DMG400020470 Solanum tuberosum HOM05D006875 ORTHO05D008416 4.5e-33 145.2 173 52.0
Sopen06g024670 Solanum pennellii HOM05D006875 ORTHO05D008416 7.7e-33 144.4 170 52.4
Solyc06g066190.3 Solanum lycopersicum HOM05D006875 ORTHO05D008416 1.0e-32 144.1 170 52.4
Actinidia18144 Actinidia chinensis HOM05D006875 ORTHO05D008416 2.2e-32 142.9 182 48.9
BcaC03g16779 Brassica carinata HOM05D006875 ORTHO05D008416 3.8e-32 142.1 175 51.4
BolC2t10706H Brassica oleracea HOM05D006875 ORTHO05D008416 3.8e-32 142.1 175 51.4
CiPaw.12G070200 Carya illinoinensis HOM05D006875 ORTHO05D008416 3.8e-32 142.1 177 48.6
Actinidia14761 Actinidia chinensis HOM05D006875 ORTHO05D008416 6.5e-32 141.4 182 46.7
THA.LOC104806179 Tarenaya hassleriana HOM05D006875 ORTHO05D008416 8.5e-32 141.0 183 49.2
Nitab4.5_0005761g0030 Nicotiana tabacum HOM05D006875 ORTHO05D008416 1.1e-31 140.6 189 47.6
HanXRQChr16g0510981 Helianthus annuus HOM05D006875 ORTHO05D008416 1.9e-31 139.8 175 52.0
Cc08_g04080 Coffea canephora HOM05D006875 ORTHO05D008416 2.5e-31 139.4 177 49.7
Peaxi162Scf00185g01627 Petunia axillaris HOM05D006875 ORTHO05D008416 2.5e-31 139.4 174 52.3
Sp2g10480 Schrenkiella parvula HOM05D006875 ORTHO05D008416 3.2e-31 139.0 171 49.7
Thhalv10001052m.g Eutrema salsugineum HOM05D006875 ORTHO05D008416 4.2e-31 138.7 174 51.1
RcHm_v2.0_Chr7g0212891 Rosa chinensis HOM05D006875 ORTHO05D008416 4.2e-31 138.7 181 53.6
AT5G45590 Arabidopsis thaliana HOM05D006875 ORTHO05D008416 5.5e-31 138.3 173 50.9
BcaC06g31539 Brassica carinata HOM05D006875 ORTHO05D008416 7.2e-31 137.9 172 50.6
SGA_v2.0_scaffold144G35866 Striga asiatica HOM05D006875 ORTHO05D008416 7.2e-31 137.9 182 47.3
Carub.0008s0244 Capsella rubella HOM05D006875 ORTHO05D008416 1.2e-30 137.1 176 49.4
Lalb_Chr16g0380861 Lupinus albus HOM05D006875 ORTHO05D008416 1.2e-30 137.1 178 47.8
AL8G13090 Arabidopsis lyrata HOM05D006875 ORTHO05D008416 1.6e-30 136.7 174 50.6
Lalb_Chr05g0215561 Lupinus albus HOM05D006875 ORTHO05D008416 1.6e-30 136.7 171 50.3
CARHR176440 Cardamine hirsuta HOM05D006875 ORTHO05D008416 2.1e-30 136.3 180 51.7
C02p46480 Brassica napus HOM05D006875 ORTHO05D008416 2.7e-30 136.0 175 50.3
Nn1g01960 Nelumbo nucifera HOM05D006875 ORTHO05D008416 2.7e-30 136.0 176 52.8
GSVIVG01011544001 Vitis vinifera HOM05D006875 ORTHO05D008416 4.7e-30 135.2 137 59.9
Sed0011128 Sechium edule HOM05D006875 ORTHO05D008416 1.0e-29 134.0 185 45.9
TAR629G1490 Trochodendron aralioides HOM05D006875 ORTHO05D008416 1.0e-29 134.0 174 48.3
Migut.E01333 Erythranthe guttata HOM05D006875 ORTHO05D008416 1.8e-29 133.3 181 49.2
A06p46520 Brassica napus HOM05D006875 ORTHO05D008416 2.3e-29 132.9 172 48.8
BraA06t27526Z Brassica rapa HOM05D006875 ORTHO05D008416 2.3e-29 132.9 172 48.8
CDE05G0418 Ceratophyllum demersum HOM05D006875 ORTHO05D008416 3.9e-29 132.1 176 49.4
Duzib205G1866 Durio zibethinus HOM05D006875 ORTHO05D008416 3.9e-29 132.1 174 48.9
BolC7t43404H Brassica oleracea HOM05D006875 ORTHO05D008416 6.7e-29 131.3 171 48.5
Duzib068G0693 Durio zibethinus HOM05D006875 ORTHO05D008416 6.7e-29 131.3 171 49.1
Medtr5g027470 Medicago truncatula HOM05D006875 ORTHO05D008416 6.7e-29 131.3 177 47.5
BcaC06g34424 Brassica carinata HOM05D006875 ORTHO05D008416 8.8e-29 131.0 171 46.8
C07p28660 Brassica napus HOM05D006875 ORTHO05D008416 8.8e-29 131.0 171 46.8
Prupe.5G024300 Prunus persica HOM05D006875 ORTHO05D008416 8.8e-29 131.0 175 49.1
SalBow4G1271 Salvia bowleyana HOM05D006875 ORTHO05D008416 1.5e-28 130.2 182 45.6
Glyma.01G009800 Glycine max HOM05D006875 ORTHO05D008416 2.0e-28 129.8 123 61.0
A02p29280 Brassica napus HOM05D006875 ORTHO05D008416 3.3e-28 129.0 165 49.1
BraA02t07958Z Brassica rapa HOM05D006875 ORTHO05D008416 3.3e-28 129.0 165 49.1
Potri.001G133600 Populus trichocarpa HOM05D006875 ORTHO05D008416 9.7e-28 127.5 169 47.9
arahy.Tifrunner.gnm1.ann1.7H2E39 Arachis hypogaea HOM05D006875 ORTHO05D008416 1.3e-27 127.1 176 48.3
arahy.Tifrunner.gnm1.ann1.J2I619 Arachis hypogaea HOM05D006875 ORTHO05D008416 1.3e-27 127.1 176 48.3
TPR.G9090 Trifolium pratense HOM05D006875 ORTHO05D008416 1.7e-27 126.7 180 45.6
Oeu044464.1 Olea europaea HOM05D006875 ORTHO05D008416 2.2e-27 126.3 93 69.9
Ca_25148_v3 Cicer arietinum L. HOM05D006875 ORTHO05D008416 3.7e-27 125.6 174 46.0
Gohir.D08G173100 Gossypium hirsutum HOM05D006875 ORTHO05D008416 1.4e-26 123.6 170 47.1
VMungo1215G2146 Vigna mungo HOM05D006875 ORTHO05D008416 1.4e-26 123.6 169 49.7
Glyma.09G211300 Glycine max HOM05D006875 ORTHO05D008416 1.8e-26 123.2 126 58.7
Aa31LG9G7450 Aethionema arabicum HOM05D006875 ORTHO05D008416 3.1e-26 122.5 174 46.0
CsaV3_3G030390 Cucumis sativus L. HOM05D006875 ORTHO05D008416 5.3e-26 121.7 188 45.2
Eucgr.D02619 Eucalyptus grandis HOM05D006875 ORTHO05D008416 9.1e-26 120.9 175 46.3
Sabra01G0103300 Salix brachista HOM05D006875 ORTHO05D008416 1.5e-25 120.2 90 66.7
Lj2g0021598 Lotus japonicus HOM05D006875 ORTHO05D008416 4.5e-25 118.6 129 54.3
MELO3C022766.2 Cucumis melo HOM05D006875 ORTHO05D008416 5.9e-25 118.2 167 45.5
Zm00001eb025290 Zea mays HOM05D006875 ORTHO05D008416 5.9e-25 118.2 155 46.5
Os10g0579500 Oryza sativa ssp. japonica HOM05D006875 ORTHO05D008416 2.2e-24 116.3 90 68.9
Aqoxy3G02082 Aquilegia oxysepala HOM05D006875 ORTHO05D008416 3.8e-24 115.5 173 46.8
Hma1.2p1_0979F.1_g243510 Hydrangea macrophylla HOM05D006875 ORTHO05D008416 6.5e-24 114.8 181 43.6
Cfa012555 Carpinus fangiana HOM05D006875 ORTHO05D008416 8.5e-24 114.4 173 44.5
Phvul.002G132700 Phaseolus vulgaris HOM05D006875 ORTHO05D008416 8.5e-24 114.4 164 46.3
unitig_0.g2213 Utricularia gibba HOM05D006875 ORTHO05D008416 1.1e-23 114.0 172 43.6
Potri.003G099900 Populus trichocarpa HOM05D006875 ORTHO05D008416 3.2e-23 112.5 171 43.9
PSO782G2435 Papaver somniferum HOM05D006875 ORTHO05D008416 9.4e-23 110.9 164 43.3
FAN04G1681 Fragaria x ananassa HOM05D006875 ORTHO05D008416 1.2e-22 110.5 172 48.8
FAN08G3065 Fragaria x ananassa HOM05D006875 ORTHO05D008416 1.6e-22 110.2 173 46.2
FvH4_5g23590 Fragaria vesca HOM05D006875 ORTHO05D008416 2.1e-22 109.8 172 48.3
FAN18G3946 Fragaria x ananassa HOM05D006875 ORTHO05D008416 2.1e-22 109.8 172 48.3
Ciclev10002495m.g Citrus clementina HOM05D006875 ORTHO05D008416 2.7e-22 109.4 174 42.5
PSO063G1678 Papaver somniferum HOM05D006875 ORTHO05D008416 6.1e-22 108.2 178 43.3
Atru.chr6.1576 Acer truncatum HOM05D006875 ORTHO05D008416 1.4e-21 107.1 174 41.4
FAN13G1224 Fragaria x ananassa HOM05D006875 ORTHO05D008416 1.4e-21 107.1 172 46.5
FAN18G3512 Fragaria x ananassa HOM05D006875 ORTHO05D008416 1.4e-21 107.1 172 47.1
TWI23G0606 Tripterygium wilfordii HOM05D006875 ORTHO05D008416 2.6e-20 102.8 178 42.7
Manes.17G011100 Manihot esculenta HOM05D006875 ORTHO05D008416 9.7e-20 100.9 64 76.6
HPP92_025490 Vanilla planifolia HOM05D006875 ORTHO05D008416 1.7e-19 100.1 177 44.1
Gohir.A08G152100 Gossypium hirsutum HOM05D006875 ORTHO05D008416 4.8e-19 98.6 170 42.4
vmacro14218 Vaccinium macrocarpon HOM05D006875 ORTHO05D008416 4.8e-19 98.6 254 33.9
Thecc.03G314400 Theobroma cacao HOM05D006875 ORTHO05D008416 8.2e-19 97.8 169 40.8
CANSAT21G2454 Cannabis sativa HOM05D006875 ORTHO05D008416 1.1e-18 97.4 172 41.9
Sabra03G0067900 Salix brachista HOM05D006875 ORTHO05D008416 3.5e-17 92.4 87 56.3
MD00G1000200 Malus domestica HOM05D006875 ORTHO05D008416 5.9e-17 91.7 175 41.7
COL.COLO4_16883 Corchorus olitorius HOM05D006875 ORTHO05D008416 1.0e-16 90.9 55 80.0
Cpa.g.c33846 Carica papaya HOM05D006875 ORTHO05D008416 3.8e-16 89.0 145 49.0
Rhsim07G0136500 Rhododendron simsii HOM05D006875 ORTHO05D008416 5.0e-16 88.6 158 39.2
CDE11G0569 Ceratophyllum demersum HOM05D006875 ORTHO05D008416 8.5e-16 87.8 141 41.8
Mapoly0025s0027 Marchantia polymorpha HOM05D006875 ORTHO05D008416 5.5e-15 85.1 67 62.7
Gorai.004G180500 Gossypium raimondii HOM05D006875 ORTHO05D008416 1.6e-14 83.6 164 39.0
Pp3c9_12060 Physcomitrium patens HOM05D006875 ORTHO05D008416 1.6e-14 83.6 131 40.5
Haze_08105 Corylus avellana HOM05D006875 ORTHO05D008416 2.1e-14 83.2 60 65.0
Psat2g139680 Pisum sativum HOM05D006875 ORTHO05D008416 2.1e-14 83.2 150 40.0
QL12p000430 Quercus lobata HOM05D006875 ORTHO05D008416 1.8e-13 80.1 141 38.3
ClCG07G002300 Citrullus lanatus HOM05D006875 ORTHO05D008416 2.3e-13 79.7 142 40.8
ATR0829G201 Amborella trichopoda HOM05D006875 ORTHO05D008416 3.0e-13 79.3 102 47.1
Haze_08111 Corylus avellana HOM05D006875 ORTHO05D008416 6.7e-13 78.2 145 39.3
ECA233G1303 Erigeron canadensis HOM05D000321 ORTHO05D000204 2.2e-11 73.2 64 59.4
AagrBONN_evm.TU.Sc2ySwM_362.254 Anthoceros agrestis HOM05D006875 ORTHO05D008416 1.4e-10 70.5 67 55.2
RcHm_v2.0_Chr1g0382651 Rosa chinensis HOM05D006875 ORTHO05D008416 1.8e-10 70.1 45 71.1
SEGI_22250 Sequoiadendron giganteum HOM05D006875 ORTHO05D008416 3.1e-10 69.3 66 60.6
SHI45156 Sapria himalayana HOM05D006875 ORTHO05D008416 5.3e-10 68.6 76 48.7
Lsat_1_v5_gn_3_43041 Lactuca sativa HOM05D006875 ORTHO05D008416 1.6e-09 67.0 189 34.9
PGR031G1815 Punica granatum HOM05D006875 ORTHO05D008416 2.5e-07 59.7 135 36.3


User provided reference genes

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