Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc01g0005990 Simmondsia chinensis HOM05D006592 ORTHO05D008122 1.4e-134 483.0 249 100.0
Hund14317 Selenicereus undatus HOM05D006592 ORTHO05D008122 1.2e-45 187.6 242 49.6
AUR62027300 Chenopodium quinoa HOM05D006592 ORTHO05D008122 7.6e-45 184.9 185 50.8
AUR62007438 Chenopodium quinoa HOM05D006592 ORTHO05D008122 2.1e-42 176.8 181 49.7
EL10Ac5g11887 Beta vulgaris HOM05D006592 ORTHO05D008122 6.0e-42 175.3 218 44.0
GSVIVG01036935001 Vitis vinifera HOM05D006592 ORTHO05D008122 5.1e-41 172.2 228 46.9
Dinv37459 Davidia involucrata HOM05D006592 ORTHO05D008122 8.7e-41 171.4 202 52.5
Lalb_Chr05g0229391 Lupinus albus HOM05D006592 ORTHO05D008122 2.5e-40 169.9 228 45.6
Lj4g0015969 Lotus japonicus HOM05D006592 ORTHO05D008122 4.3e-40 169.1 257 40.9
arahy.Tifrunner.gnm1.ann1.35U8WI Arachis hypogaea HOM05D006592 ORTHO05D008122 1.3e-39 167.5 247 42.9
Haze_08005 Corylus avellana HOM05D006592 ORTHO05D008122 2.2e-39 166.8 175 51.4
Ah.02g117360 Amaranthus hybridus HOM05D006592 ORTHO05D008122 4.8e-39 165.6 186 46.8
Glyma.16G106700 Glycine max HOM05D006592 ORTHO05D008122 4.8e-39 165.6 256 40.6
TPR.G16815 Trifolium pratense HOM05D006592 ORTHO05D008122 1.1e-38 164.5 226 42.5
Ca_22475_v3 Cicer arietinum L. HOM05D006592 ORTHO05D008122 1.4e-38 164.1 243 42.0
Atru.chr6.2117 Acer truncatum HOM05D006592 ORTHO05D008122 2.4e-38 163.3 207 47.8
arahy.Tifrunner.gnm1.ann1.6CV8VS Arachis hypogaea HOM05D006592 ORTHO05D008122 3.1e-38 162.9 263 41.8
SGA_v2.0_scaffold144G35824 Striga asiatica HOM05D006592 ORTHO05D008122 5.3e-38 162.2 177 49.7
Sabra03G0072100 Salix brachista HOM05D006592 ORTHO05D008122 6.9e-38 161.8 248 42.7
MBI04_g30774_MAGBIO Magnolia biondii HOM05D006592 ORTHO05D008122 9.0e-38 161.4 142 54.9
Phvul.003G276900 Phaseolus vulgaris HOM05D006592 ORTHO05D008122 1.5e-37 160.6 232 40.9
Aqoxy7G04139 Aquilegia oxysepala HOM05D006592 ORTHO05D008122 3.4e-37 159.5 125 58.4
CDE11G0624 Ceratophyllum demersum HOM05D006592 ORTHO05D008122 4.5e-37 159.1 190 46.3
PSO063G4459 Papaver somniferum HOM05D006592 ORTHO05D008122 4.5e-37 159.1 184 48.9
Potri.003G105100 Populus trichocarpa HOM05D006592 ORTHO05D008122 5.9e-37 158.7 244 41.8
TAR622G1375 Trochodendron aralioides HOM05D006592 ORTHO05D008122 1.3e-36 157.5 197 45.7
Psat4g134920 Pisum sativum HOM05D006592 ORTHO05D008122 1.7e-36 157.1 247 40.1
CSS0050204 Camellia sinensis var. sinensis HOM05D006592 ORTHO05D008122 2.2e-36 156.8 122 59.8
Glyma.16G075200 Glycine max HOM05D006592 ORTHO05D008122 2.2e-36 156.8 209 42.6
Sed0001244 Sechium edule HOM05D006592 ORTHO05D008122 2.9e-36 156.4 236 40.7
CAN.G561.14 Capsicum annuum HOM05D006592 ORTHO05D008122 5.0e-36 155.6 227 40.5
ClCG11G016240 Citrullus lanatus HOM05D006592 ORTHO05D008122 5.0e-36 155.6 179 46.4
ATR0829G075 Amborella trichopoda HOM05D006592 ORTHO05D008122 6.5e-36 155.2 125 59.2
PSO782G0843 Papaver somniferum HOM05D006592 ORTHO05D008122 6.5e-36 155.2 184 47.8
QL02p100032 Quercus lobata HOM05D006592 ORTHO05D008122 8.5e-36 154.8 258 39.1
SalBow8G1786 Salvia bowleyana HOM05D006592 ORTHO05D008122 8.5e-36 154.8 177 45.8
CsaV3_4G037940 Cucumis sativus L. HOM05D006592 ORTHO05D008122 1.1e-35 154.5 204 43.1
SalBow8G4832 Salvia bowleyana HOM05D006592 ORTHO05D008122 1.1e-35 154.5 177 45.8
MD07G1026800 Malus domestica HOM05D006592 ORTHO05D008122 1.4e-35 154.1 221 42.5
Nitab4.5_0004477g0030 Nicotiana tabacum HOM05D006592 ORTHO05D008122 1.9e-35 153.7 236 39.8
TWI60G0674 Tripterygium wilfordii HOM05D006592 ORTHO05D008122 2.5e-35 153.3 185 44.3
Sopen08g001820 Solanum pennellii HOM05D006592 ORTHO05D008122 4.2e-35 152.5 227 41.4
Actinidia29329 Actinidia chinensis HOM05D006592 ORTHO05D008122 7.2e-35 151.8 184 48.4
Solyc08g005860.3 Solanum lycopersicum HOM05D006592 ORTHO05D008122 7.2e-35 151.8 183 45.9
PGSC0003DMG400024141 Solanum tuberosum HOM05D006592 ORTHO05D008122 7.2e-35 151.8 227 40.5
Eucgr.E01202 Eucalyptus grandis HOM05D006592 ORTHO05D008122 9.4e-35 151.4 254 40.2
Medtr8g071820 Medicago truncatula HOM05D006592 ORTHO05D008122 1.2e-34 151.0 224 42.0
Cpa.g.sc137.28 Carica papaya HOM05D006592 ORTHO05D008122 1.6e-34 150.6 187 46.0
Migut.E01392 Erythranthe guttata HOM05D006592 ORTHO05D008122 2.1e-34 150.2 181 44.2
Manes.17G005500 Manihot esculenta HOM05D006592 ORTHO05D008122 2.1e-34 150.2 234 40.6
Oeu028120.2 Olea europaea HOM05D006592 ORTHO05D008122 2.1e-34 150.2 124 58.1
THA.LOC104814375 Tarenaya hassleriana HOM05D006592 ORTHO05D008122 3.6e-34 149.4 185 46.5
MELO3C010544.2 Cucumis melo HOM05D006592 ORTHO05D008122 4.6e-34 149.1 203 43.3
CANSAT11G2102 Cannabis sativa HOM05D006592 ORTHO05D008122 6.1e-34 148.7 242 41.7
Prupe.2G060600 Prunus persica HOM05D006592 ORTHO05D008122 6.1e-34 148.7 248 40.3
PGR042G2051 Punica granatum HOM05D006592 ORTHO05D008122 1.0e-33 147.9 117 58.1
Rhsim07G0174700 Rhododendron simsii HOM05D006592 ORTHO05D008122 1.0e-33 147.9 125 56.0
vmacro05080 Vaccinium macrocarpon HOM05D006592 ORTHO05D008122 1.0e-33 147.9 253 41.1
Zm00001eb430350 Zea mays HOM05D006592 ORTHO05D008122 2.3e-33 146.7 119 55.5
Carub.0001s2983 Capsella rubella HOM05D006592 ORTHO05D008122 3.0e-33 146.4 176 43.8
Lsat_1_v5_gn_5_55220 Lactuca sativa HOM05D006592 ORTHO05D008122 3.9e-33 146.0 243 40.3
Nitab4.5_0000063g0390 Nicotiana tabacum HOM05D006592 ORTHO05D008122 5.1e-33 145.6 240 38.8
FAN25G1190 Fragaria x ananassa HOM05D006592 ORTHO05D008122 6.7e-33 145.2 230 40.0
CiPaw.11G105000 Carya illinoinensis HOM05D006592 ORTHO05D008122 8.8e-33 144.8 172 47.1
Hma1.2p1_1256F.1_g270670 Hydrangea macrophylla HOM05D006592 ORTHO05D008122 1.1e-32 144.4 240 39.2
Aa31LG2G14540 Aethionema arabicum HOM05D006592 ORTHO05D008122 2.5e-32 143.3 186 42.5
FvH4_3g41920 Fragaria vesca HOM05D006592 ORTHO05D008122 2.5e-32 143.3 227 41.0
HanXRQChr13g0411871 Helianthus annuus HOM05D006592 ORTHO05D008122 2.5e-32 143.3 177 44.1
FAN11G2031 Fragaria x ananassa HOM05D006592 ORTHO05D008122 3.3e-32 142.9 227 41.0
Peaxi162Scf00045g01236 Petunia axillaris HOM05D006592 ORTHO05D008122 4.3e-32 142.5 238 38.2
AT1G31410 Arabidopsis thaliana HOM05D006592 ORTHO05D008122 7.4e-32 141.7 177 44.6
Cc00_g08640 Coffea canephora HOM05D006592 ORTHO05D008122 7.4e-32 141.7 156 46.2
AL1G49640 Arabidopsis lyrata HOM05D006592 ORTHO05D008122 1.3e-31 141.0 176 43.8
DCAR_028262 Daucus carota HOM05D006592 ORTHO05D008122 2.2e-31 140.2 203 41.9
RcHm_v2.0_Chr1g0331171 Rosa chinensis HOM05D006592 ORTHO05D008122 8.2e-31 138.3 232 38.8
ECA240G2178 Erigeron canadensis HOM05D006592 ORTHO05D008122 1.1e-30 137.9 230 41.3
Pp3c1_19230 Physcomitrium patens HOM05D006592 ORTHO05D008122 1.8e-30 137.1 153 46.4
Thhalv10007328m.g Eutrema salsugineum HOM05D006592 ORTHO05D008122 4.1e-30 136.0 185 42.7
Thecc.03G323800 Theobroma cacao HOM05D006592 ORTHO05D008122 4.1e-30 136.0 136 51.5
AagrBONN_evm.TU.Sc2ySwM_344.4668 Anthoceros agrestis HOM05D006592 ORTHO05D008122 3.4e-29 132.9 121 49.6
unitig_899.g15474 Utricularia gibba HOM05D006592 ORTHO05D008122 3.4e-29 132.9 177 42.4
FAN21G3043 Fragaria x ananassa HOM05D006592 ORTHO05D008122 5.9e-29 132.1 227 39.6
Sp1g27210 Schrenkiella parvula HOM05D006592 ORTHO05D008122 5.9e-29 132.1 185 41.6
A07p09410 Brassica napus HOM05D006592 ORTHO05D008122 1.7e-28 130.6 176 42.0
BraA07t28736Z Brassica rapa HOM05D006592 ORTHO05D008122 2.9e-28 129.8 179 42.5
Gohir.A08G147100 Gossypium hirsutum HOM05D006592 ORTHO05D008122 2.9e-28 129.8 129 49.6
Gohir.D08G168300 Gossypium hirsutum HOM05D006592 ORTHO05D008122 2.9e-28 129.8 129 49.6
BcaB03g13796 Brassica carinata HOM05D006592 ORTHO05D008122 3.8e-28 129.4 181 40.3
Duzib084G0624 Durio zibethinus HOM05D006592 ORTHO05D008122 5.0e-28 129.0 234 37.2
Gorai.004G175600 Gossypium raimondii HOM05D006592 ORTHO05D008122 8.5e-28 128.3 129 48.8
C07p14480 Brassica napus HOM05D006592 ORTHO05D008122 1.1e-27 127.9 178 42.7
BolC7t41947H Brassica oleracea HOM05D006592 ORTHO05D008122 3.2e-27 126.3 179 42.5
Mapoly0006s0240 Marchantia polymorpha HOM05D006592 ORTHO05D008122 2.1e-26 123.6 121 45.5
VMungo0251G2096 Vigna mungo HOM05D006592 ORTHO05D008122 3.6e-26 122.9 255 35.3
SMO244G0026 Selaginella moellendorffii HOM05D006592 ORTHO05D008122 5.1e-25 119.0 119 46.2
COL.COLO4_16712 Corchorus olitorius HOM05D006592 ORTHO05D008122 1.5e-21 107.5 97 53.6
CBR_g19872 Chara braunii HOM05D006592 ORTHO05D008122 1.7e-20 104.0 112 45.5
CBR_g37675 Chara braunii HOM05D006592 ORTHO05D008122 1.4e-19 100.9 112 42.9
Ciclev10004057m.g Citrus clementina HOM05D006592 ORTHO05D008122 9.7e-16 88.2 81 54.3
Os04g0602200 Oryza sativa ssp. japonica HOM05D006592 ORTHO05D008122 9.1e-14 81.6 73 49.3
Nn1g09214 Nelumbo nucifera HOM05D006592 ORTHO05D008122 3.8e-12 76.3 116 44.0
Cre06.g292100 Chlamydomonas reinhardtii HOM05D006592 ORTHO05D008122 8.0e-10 68.6 94 39.4
Hma1.2p1_1046F.1_g251530 Hydrangea macrophylla HOM05D000002 ORTHO05D000001 1.8e-09 67.4 47 57.4
AagrBONN_evm.TU.Sc2ySwM_117.3387 Anthoceros agrestis HOM05D006592 ORTHO05D008122 9.7e-08 61.6 120 29.2
SEGI_04489 Sequoiadendron giganteum HOM05D006592 ORTHO05D008122 4.1e-06 56.2 42 57.1


User provided reference genes

Program Settings