Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc01g0005970 Simmondsia chinensis HOM05D006207 ORTHO05D007868 7.9e-164 580.5 315 100.0
GSVIVG01030275001 Vitis vinifera HOM05D006207 ORTHO05D002478 2.9e-81 306.2 319 54.5
Actinidia29070 Actinidia chinensis HOM05D006207 ORTHO05D007868 8.7e-78 294.7 325 52.0
Dinv35401 Davidia involucrata HOM05D006207 ORTHO05D007868 8.7e-78 294.7 329 54.7
Actinidia11552 Actinidia chinensis HOM05D006207 ORTHO05D007868 1.1e-77 294.3 323 55.1
Manes.09G111300 Manihot esculenta HOM05D006207 ORTHO05D007868 9.6e-77 291.2 315 51.4
CiPaw.09G215000 Carya illinoinensis HOM05D006207 ORTHO05D007868 3.1e-75 286.2 315 54.6
TAR623G0507 Trochodendron aralioides HOM05D006207 ORTHO05D007868 6.9e-75 285.0 321 50.2
Lj3g0024527 Lotus japonicus HOM05D006207 ORTHO05D007868 2.6e-74 283.1 311 51.1
CsaV3_4G026760 Cucumis sativus L. HOM05D006207 ORTHO05D007868 3.4e-74 282.7 330 52.4
Ciclev10012309m.g Citrus clementina HOM05D006207 ORTHO05D007868 4.4e-74 282.3 315 51.4
MELO3C026025.2 Cucumis melo HOM05D006207 ORTHO05D007868 4.4e-74 282.3 328 51.8
CSS0029336 Camellia sinensis var. sinensis HOM05D006207 ORTHO05D007868 7.6e-74 281.6 328 53.4
vmacro08907 Vaccinium macrocarpon HOM05D006207 ORTHO05D007868 4.9e-73 278.9 326 50.9
ClCG04G006690 Citrullus lanatus HOM05D006207 ORTHO05D007868 8.4e-73 278.1 323 50.8
Sed0003544 Sechium edule HOM05D006207 ORTHO05D007868 8.4e-73 278.1 320 51.2
Sed0019485 Sechium edule HOM05D006207 ORTHO05D007868 3.2e-72 276.2 330 52.4
Glyma.U032705 Glycine max HOM05D006207 ORTHO05D007868 1.6e-71 273.9 316 52.2
Phvul.010G064400 Phaseolus vulgaris HOM05D006207 ORTHO05D007868 4.6e-71 272.3 321 49.5
Lalb_Chr12g0207271 Lupinus albus HOM05D006207 ORTHO05D007868 6.0e-71 271.9 317 51.1
Cpa.g.sc5.234 Carica papaya HOM05D006207 ORTHO05D007868 1.3e-70 270.8 323 48.6
Glyma.01G125600 Glycine max HOM05D006207 ORTHO05D007868 1.7e-70 270.4 313 49.8
Sp3g07200 Schrenkiella parvula HOM05D006207 ORTHO05D007868 2.3e-70 270.0 321 49.2
Thecc.05G007100 Theobroma cacao HOM05D006207 ORTHO05D007868 3.0e-70 269.6 313 48.2
Duzib093G0843 Durio zibethinus HOM05D006207 ORTHO05D007868 3.9e-70 269.2 313 48.9
Gohir.A09G167800 Gossypium hirsutum HOM05D006207 ORTHO05D007868 5.1e-70 268.9 313 50.2
Gorai.006G185200 Gossypium raimondii HOM05D006207 ORTHO05D007868 1.1e-69 267.7 313 49.2
RcHm_v2.0_Chr3g0461671 Rosa chinensis HOM05D006207 ORTHO05D007868 2.5e-69 266.5 315 52.1
Dinv12164 Davidia involucrata HOM05D006207 ORTHO05D007868 3.3e-69 266.2 334 50.9
EL10Ac5g12487 Beta vulgaris HOM05D006207 ORTHO05D007868 1.3e-68 264.2 317 49.2
PGR031G0899 Punica granatum HOM05D006207 ORTHO05D007868 1.3e-68 264.2 315 48.3
Atru.chr8.2331 Acer truncatum HOM05D006207 ORTHO05D007868 1.6e-68 263.8 328 48.2
TAR633G0541 Trochodendron aralioides HOM05D006207 ORTHO05D007868 2.1e-68 263.5 321 46.7
CANSAT35G0048 Cannabis sativa HOM05D006207 ORTHO05D007868 3.6e-68 262.7 318 48.1
CAN.G967.4 Capsicum annuum HOM05D006207 ORTHO05D007868 3.6e-68 262.7 327 48.3
A05p40020 Brassica napus HOM05D006207 ORTHO05D007868 8.1e-68 261.5 320 50.6
Lsat_1_v5_gn_8_103441 Lactuca sativa HOM05D006207 ORTHO05D007868 8.1e-68 261.5 326 48.5
BraA05t22911Z Brassica rapa HOM05D006207 ORTHO05D007868 1.1e-67 261.2 321 50.5
Gorai.002G266400 Gossypium raimondii HOM05D006207 ORTHO05D007868 1.4e-67 260.8 318 49.4
Gohir.D01G219700 Gossypium hirsutum HOM05D006207 ORTHO05D007868 1.8e-67 260.4 318 49.1
Prupe.6G284500 Prunus persica HOM05D006207 ORTHO05D007868 1.8e-67 260.4 320 48.1
Gohir.D09G163700 Gossypium hirsutum HOM05D006207 ORTHO05D007868 3.1e-67 259.6 313 48.9
THA.LOC104823306 Tarenaya hassleriana HOM05D006207 ORTHO05D007868 3.1e-67 259.6 324 46.6
COL.COLO4_14454 Corchorus olitorius HOM05D006207 ORTHO05D007868 4.0e-67 259.2 315 47.9
C05p59060 Brassica napus HOM05D006207 ORTHO05D007868 2.0e-66 256.9 321 46.4
Gohir.A01G229800 Gossypium hirsutum HOM05D006207 ORTHO05D007868 2.0e-66 256.9 318 48.7
QL07p033964 Quercus lobata HOM05D006207 ORTHO05D007868 2.6e-66 256.5 325 49.2
TWI53G1221 Tripterygium wilfordii HOM05D006207 ORTHO05D007868 7.6e-66 255.0 313 49.2
Nn2g11009 Nelumbo nucifera HOM05D006207 ORTHO05D007868 1.3e-65 254.2 305 46.6
arahy.Tifrunner.gnm1.ann1.S95MPE Arachis hypogaea HOM05D006207 ORTHO05D007868 1.7e-65 253.8 334 50.6
BolC5t34558H Brassica oleracea HOM05D006207 ORTHO05D007868 1.7e-65 253.8 320 49.4
Sopen09g008460 Solanum pennellii HOM05D006207 ORTHO05D007868 2.9e-65 253.1 328 47.6
Aqoxy1G01290 Aquilegia oxysepala HOM05D006207 ORTHO05D007868 3.8e-65 252.7 341 46.0
FAN05G3975 Fragaria x ananassa HOM05D006207 ORTHO05D007868 6.4e-65 251.9 317 49.2
Rhsim04G0125000 Rhododendron simsii HOM05D006207 ORTHO05D007868 6.4e-65 251.9 320 48.1
Duzib106G1231 Durio zibethinus HOM05D006207 ORTHO05D007868 1.4e-64 250.8 308 48.1
VMungo0331G1865 Vigna mungo HOM05D006207 ORTHO05D007868 2.4e-64 250.0 312 47.4
AL3G19780 Arabidopsis lyrata HOM05D006207 ORTHO05D007868 3.2e-64 249.6 316 47.8
PGSC0003DMG400017108 Solanum tuberosum HOM05D006207 ORTHO05D007868 3.2e-64 249.6 328 47.6
Aa31LG5G18780 Aethionema arabicum HOM05D006207 ORTHO05D007868 5.4e-64 248.8 305 47.9
Thhalv10021171m.g Eutrema salsugineum HOM05D006207 ORTHO05D007868 7.1e-64 248.4 317 46.7
FAN05G5543 Fragaria x ananassa HOM05D006207 ORTHO05D007868 9.3e-64 248.1 317 48.9
AT3G08780 Arabidopsis thaliana HOM05D006207 ORTHO05D007868 2.1e-63 246.9 317 46.4
TWI74G1498 Tripterygium wilfordii HOM05D006207 ORTHO05D007868 2.7e-63 246.5 320 46.9
Psat7g249160 Pisum sativum HOM05D006207 ORTHO05D007868 3.5e-63 246.1 324 47.5
CARHR083100 Cardamine hirsuta HOM05D006207 ORTHO05D007868 6.0e-63 245.4 318 46.5
Potri.016G126200 Populus trichocarpa HOM05D006207 ORTHO05D007868 1.3e-62 244.2 320 45.9
arahy.Tifrunner.gnm1.ann1.WBCD4G Arachis hypogaea HOM05D006207 ORTHO05D007868 1.8e-62 243.8 335 50.4
Peaxi162Scf00744g00339 Petunia axillaris HOM05D006207 ORTHO05D007868 2.3e-62 243.4 336 44.0
Sabra16G0120700 Salix brachista HOM05D006207 ORTHO05D007868 1.1e-61 241.1 320 45.6
FvH4_6g10650 Fragaria vesca HOM05D006207 ORTHO05D007868 9.6e-61 238.0 317 47.3
FAN14G5611 Fragaria x ananassa HOM05D006207 ORTHO05D007868 9.6e-61 238.0 317 47.3
FAN09G2678 Fragaria x ananassa HOM05D006207 ORTHO05D007868 1.6e-60 237.3 317 47.9
DCAR_023998 Daucus carota HOM05D006207 ORTHO05D007868 2.1e-60 236.9 320 45.3
Oeu057638.1 Olea europaea HOM05D006207 ORTHO05D007868 2.1e-60 236.9 320 44.1
Carub.0003s0791 Capsella rubella HOM05D006207 ORTHO05D007868 6.2e-60 235.3 317 46.4
Migut.J00099 Erythranthe guttata HOM05D006207 ORTHO05D007868 6.2e-60 235.3 315 44.8
Oeu038722.1 Olea europaea HOM05D006207 ORTHO05D007868 6.2e-60 235.3 315 44.8
Nitab4.5_0000230g0180 Nicotiana tabacum HOM05D006207 ORTHO05D007868 1.4e-59 234.2 307 46.9
Nitab4.5_0015157g0010 Nicotiana tabacum HOM05D006207 ORTHO05D007868 1.8e-59 233.8 308 46.8
CDE07G0940 Ceratophyllum demersum HOM05D006207 ORTHO05D007868 1.5e-58 230.7 317 43.8
Cfa017117 Carpinus fangiana HOM05D006207 ORTHO05D007868 5.8e-58 228.8 302 50.0
MSTRG.5544 Avicennia marina HOM05D006207 ORTHO05D007868 2.2e-57 226.9 318 43.7
Cc06_g00770 Coffea canephora HOM05D006207 ORTHO05D002478 2.2e-57 226.9 335 43.9
vmacro20324 Vaccinium macrocarpon HOM05D006207 ORTHO05D007868 2.9e-57 226.5 311 46.9
Ah.12g059050 Amaranthus hybridus HOM05D006207 ORTHO05D007868 3.2e-56 223.0 300 47.0
HanXRQChr16g0510291 Helianthus annuus HOM05D006207 ORTHO05D007868 5.5e-56 222.2 311 44.1
TPR.G5270 Trifolium pratense HOM05D006207 ORTHO05D007868 8.7e-54 214.9 322 43.8
SHI12871 Sapria himalayana HOM05D006207 ORTHO05D007868 2.8e-52 209.9 305 41.3
unitig_27.g24873 Utricularia gibba HOM05D006207 ORTHO05D007868 9.0e-51 204.9 318 41.8
PSO765G0078 Papaver somniferum HOM05D006207 ORTHO05D007868 5.8e-50 202.2 323 43.7
Medtr4g014250 Medicago truncatula HOM05D006207 ORTHO05D007868 1.3e-49 201.1 306 42.5
BcaC05g29617 Brassica carinata HOM05D006207 ORTHO05D007868 1.7e-49 200.7 275 43.6
ECA236G5132 Erigeron canadensis HOM05D006207 ORTHO05D007868 4.9e-49 199.1 319 44.8
MBI03_g07303_MAGBIO Magnolia biondii HOM05D006207 ORTHO05D007868 4.9e-49 199.1 318 43.7
CDE06G0694 Ceratophyllum demersum HOM05D006207 ORTHO05D007868 1.1e-48 198.0 315 40.3
Lj2C67T4 Lonicera japonica HOM05D006207 ORTHO05D007868 1.2e-47 194.5 203 54.7
HPP92_019707 Vanilla planifolia HOM05D006207 ORTHO05D007868 3.0e-46 189.9 325 39.1
ATR0594G098 Amborella trichopoda HOM05D006207 ORTHO05D007868 2.9e-41 173.3 302 39.4
Lj3P946T49 Lonicera japonica HOM05D006207 ORTHO05D007868 2.5e-37 160.2 186 50.5
AUR62030762 Chenopodium quinoa HOM05D006207 ORTHO05D007868 2.8e-36 156.8 298 37.6
Solyc09g015180.4 Solanum lycopersicum HOM05D006207 ORTHO05D007868 8.2e-36 155.2 250 41.2
Rhsim05G0225500 Rhododendron simsii HOM05D006207 ORTHO05D007868 3.1e-35 153.3 186 47.8
Zm00001eb163300 Zea mays HOM05D006207 ORTHO05D007868 4.5e-34 149.4 314 38.2
AUR62030533 Chenopodium quinoa HOM05D006207 ORTHO05D007868 6.5e-33 145.6 138 55.8
SEGI_14997 Sequoiadendron giganteum HOM05D006207 ORTHO05D007868 4.2e-32 142.9 394 29.9
Os07g0540200 Oryza sativa ssp. japonica HOM05D006207 ORTHO05D007868 3.7e-28 129.8 310 32.6
Duzib128G0456 Durio zibethinus HOM05D006207 ORTHO05D007868 4.8e-28 129.4 185 42.2
Pp3c3_16910 Physcomitrium patens HOM05D006207 ORTHO05D007868 5.9e-26 122.5 347 32.3
MD04G1166200 Malus domestica HOM05D006207 ORTHO05D007868 9.4e-24 115.2 223 37.7
Os04g0479300 Oryza sativa ssp. japonica HOM05D006207 ORTHO05D007868 1.1e-21 108.2 308 34.7
AagrBONN_evm.TU.Sc2ySwM_368.1939 Anthoceros agrestis HOM05D006207 ORTHO05D007868 1.4e-19 101.3 389 27.2
Ca_20352_v3 Cicer arietinum L. HOM05D006207 ORTHO05D007868 7.2e-16 89.0 87 52.9
CBR_g48858 Chara braunii HOM05D006207 ORTHO05D007868 3.6e-15 86.7 195 33.3
MD04G1166100 Malus domestica HOM05D006207 ORTHO05D007868 4.7e-15 86.3 64 65.6
Zm00001eb421620 Zea mays HOM05D006207 ORTHO05D007868 5.2e-14 82.8 233 30.9
SalBow6G1507 Salvia bowleyana HOM05D000800 ORTHO05D000658 4.5e-10 69.7 104 40.4
VMungo1215G0839 Vigna mungo HOM05D006207 ORTHO05D007868 1.6e-07 61.2 79 44.3
Mapoly0060s0108 Marchantia polymorpha HOM05D006207 ORTHO05D007868 8.8e-06 55.5 131 32.8


User provided reference genes

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