Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc01g0005720 Simmondsia chinensis HOM05D000963 ORTHO05D004715 4.0e-59 231.1 106 100.0
Atru.chr1.3576 Acer truncatum HOM05D000963 ORTHO05D004715 2.2e-49 198.7 106 89.6
Lsat_1_v5_gn_1_88180 Lactuca sativa HOM05D000963 ORTHO05D004715 6.3e-49 197.2 106 88.7
Lsat_1_v5_gn_2_97121 Lactuca sativa HOM05D000963 ORTHO05D004715 6.3e-49 197.2 106 88.7
Lsat_1_v5_gn_9_121741 Lactuca sativa HOM05D000963 ORTHO05D004715 6.3e-49 197.2 106 88.7
Sed0014585 Sechium edule HOM05D000963 ORTHO05D004715 6.3e-49 197.2 106 88.7
FvH4_c3g00050 Fragaria vesca HOM05D000963 ORTHO05D004715 8.3e-49 196.8 106 88.7
QL10p017079 Quercus lobata HOM05D000963 ORTHO05D004715 8.3e-49 196.8 105 88.6
QL93p0141_0026 Quercus lobata HOM05D000963 ORTHO05D004715 8.3e-49 196.8 105 88.6
Migut.D01391 Erythranthe guttata HOM05D000963 ORTHO05D004715 1.4e-48 196.1 106 87.7
Potri.011G074033 Populus trichocarpa HOM05D000963 ORTHO05D004715 2.4e-48 195.3 106 87.7
Lsat_1_v5_gn_8_139840 Lactuca sativa HOM05D000963 ORTHO05D004715 3.1e-48 194.9 106 87.7
AL9U11970 Arabidopsis lyrata HOM05D000963 ORTHO05D004715 1.2e-47 193.0 106 86.8
C09p40280 Brassica napus HOM05D000963 ORTHO05D004715 1.2e-47 193.0 106 86.8
BolSC44t60816H Brassica oleracea HOM05D000963 ORTHO05D004715 1.2e-47 193.0 106 86.8
BolSC44t60829H Brassica oleracea HOM05D000963 ORTHO05D004715 1.2e-47 193.0 106 86.8
BolSC49t61135H Brassica oleracea HOM05D000963 ORTHO05D004715 1.2e-47 193.0 106 86.8
BraSC103t45422Z Brassica rapa HOM05D000963 ORTHO05D004715 1.2e-47 193.0 106 86.8
BraSC103t45433Z Brassica rapa HOM05D000963 ORTHO05D004715 1.2e-47 193.0 106 86.8
BraSC138t45541Z Brassica rapa HOM05D000963 ORTHO05D004715 1.2e-47 193.0 106 86.8
BraSC25t45904Z Brassica rapa HOM05D000963 ORTHO05D004715 1.2e-47 193.0 106 86.8
BraSC25t45917Z Brassica rapa HOM05D000963 ORTHO05D004715 1.2e-47 193.0 106 86.8
QL93p0141_0000 Quercus lobata HOM05D000963 ORTHO05D004715 1.6e-47 192.6 105 86.7
BraSC59t46533Z Brassica rapa HOM05D000963 ORTHO05D004715 3.5e-47 191.4 106 85.8
Sopen06g015060 Solanum pennellii HOM05D000963 ORTHO05D004715 3.5e-47 191.4 107 86.9
PGSC0003DMG400034831 Solanum tuberosum HOM05D000963 ORTHO05D004715 3.5e-47 191.4 107 86.9
Aqoxy38s008 Aquilegia oxysepala HOM05D000963 ORTHO05D004715 4.5e-47 191.0 106 86.8
BolSC29t60541H Brassica oleracea HOM05D000963 ORTHO05D004715 5.9e-47 190.7 106 85.8
COL.COLO4_02154 Corchorus olitorius HOM05D000963 ORTHO05D004715 5.9e-47 190.7 106 85.8
Sed0012027 Sechium edule HOM05D000963 ORTHO05D004715 5.9e-47 190.7 106 86.8
Lsat_1_v5_gn_5_181901 Lactuca sativa HOM05D000963 ORTHO05D004715 7.7e-47 190.3 103 86.4
Lsat_1_v5_gn_5_4701 Lactuca sativa HOM05D000963 ORTHO05D004715 7.7e-47 190.3 103 86.4
BolSC37t60787H Brassica oleracea HOM05D000963 ORTHO05D004715 1.7e-46 189.1 107 86.0
Gohir.D04G096676 Gossypium hirsutum HOM05D000963 ORTHO05D004715 3.8e-46 188.0 106 84.9
BolC9t56918H Brassica oleracea HOM05D000963 ORTHO05D004715 5.0e-46 187.6 106 84.9
Lsat_1_v5_gn_2_50801 Lactuca sativa HOM05D000963 ORTHO05D004715 5.0e-46 187.6 105 84.8
BolSC45t60916H Brassica oleracea HOM05D000963 ORTHO05D004715 8.5e-46 186.8 102 86.3
Gohir.1Z049781 Gossypium hirsutum HOM05D000963 ORTHO05D004715 3.2e-45 184.9 106 84.0
CAN.G929.1 Capsicum annuum HOM05D000963 ORTHO05D004715 4.2e-45 184.5 107 84.1
Gohir.A04G057626 Gossypium hirsutum HOM05D000963 ORTHO05D004715 5.5e-45 184.1 106 82.1
CAN.G1298.20 Capsicum annuum HOM05D000963 ORTHO05D004715 1.2e-44 183.0 107 83.2
Gohir.A02G134101 Gossypium hirsutum HOM05D000963 ORTHO05D004715 1.6e-44 182.6 102 84.3
Gohir.A07G151200 Gossypium hirsutum HOM05D000963 ORTHO05D004715 1.6e-44 182.6 106 83.0
Gohir.D04G054150 Gossypium hirsutum HOM05D000963 ORTHO05D004715 4.7e-44 181.0 106 82.1
HPP92_028430 Vanilla planifolia HOM05D000963 ORTHO05D004715 6.1e-44 180.6 106 82.1
CAN.G67.2 Capsicum annuum HOM05D000963 ORTHO05D004715 8.8e-43 176.8 119 76.5
CAN.G965.10 Capsicum annuum HOM05D000963 ORTHO05D004715 1.2e-42 176.4 107 82.2
Gohir.D03G074976 Gossypium hirsutum HOM05D000963 ORTHO05D004715 5.7e-42 174.1 97 82.5
Sed0003522 Sechium edule HOM05D000963 ORTHO05D004715 7.5e-42 173.7 100 83.0
Sed0006422 Sechium edule HOM05D000963 ORTHO05D004715 7.5e-42 173.7 100 83.0
CAN.G1185.10 Capsicum annuum HOM05D000963 ORTHO05D004715 1.3e-41 172.9 104 78.8
BraSC143t45652Z Brassica rapa HOM05D000963 ORTHO05D004715 2.8e-41 171.8 107 79.4
ECA074G0007 Erigeron canadensis HOM05D000963 ORTHO05D004715 3.7e-41 171.4 92 88.0
ECA074G0008 Erigeron canadensis HOM05D000963 ORTHO05D004715 3.7e-41 171.4 92 88.0
Gohir.A05G286366 Gossypium hirsutum HOM05D000963 ORTHO05D004715 8.3e-41 170.2 101 82.2
HPP92_028419 Vanilla planifolia HOM05D000963 ORTHO05D004715 1.1e-40 169.9 99 80.8
HPP92_028432 Vanilla planifolia HOM05D000963 ORTHO05D004715 1.1e-40 169.9 99 80.8
Sabra11G0069300 Salix brachista HOM05D000963 ORTHO05D004715 2.4e-40 168.7 100 81.0
FAN13G1706 Fragaria x ananassa HOM05D000963 ORTHO05D004715 7.0e-40 167.2 92 85.9
HPP92_028383 Vanilla planifolia HOM05D000963 ORTHO05D004715 1.2e-39 166.4 99 79.8
HPP92_028406 Vanilla planifolia HOM05D000963 ORTHO05D004715 1.2e-39 166.4 99 79.8
HPP92_028415 Vanilla planifolia HOM05D000963 ORTHO05D004715 1.2e-39 166.4 99 79.8
Nitab4.5_0008665g0030 Nicotiana tabacum HOM05D000963 ORTHO05D004715 1.3e-38 162.9 97 80.4
DCAR_014935 Daucus carota HOM05D000963 ORTHO05D004715 1.7e-38 162.5 90 85.6
C09p39330 Brassica napus HOM05D000963 ORTHO05D004715 2.3e-38 162.2 106 76.4
Oeu015131.2 Olea europaea HOM05D000963 ORTHO05D004715 1.1e-37 159.8 95 77.9
Medtr5g080940 Medicago truncatula HOM05D000963 ORTHO05D004715 1.9e-37 159.1 104 76.0
BraSC58t46456Z Brassica rapa HOM05D000963 ORTHO05D004715 9.5e-37 156.8 88 84.1
Gorai.012G060700 Gossypium raimondii HOM05D000963 ORTHO05D004715 6.1e-36 154.1 92 79.3
arahy.Tifrunner.gnm1.ann1.0S9V2W Arachis hypogaea HOM05D000963 ORTHO05D004715 1.4e-35 152.9 90 82.2
arahy.Tifrunner.gnm1.ann1.56M0GV Arachis hypogaea HOM05D000963 ORTHO05D004715 1.4e-35 152.9 90 82.2
arahy.Tifrunner.gnm1.ann1.E29LBX Arachis hypogaea HOM05D000963 ORTHO05D004715 1.4e-35 152.9 90 82.2
arahy.Tifrunner.gnm1.ann1.NRNC1F Arachis hypogaea HOM05D000963 ORTHO05D004715 1.4e-35 152.9 90 82.2
arahy.Tifrunner.gnm1.ann1.PH4GL6 Arachis hypogaea HOM05D000963 ORTHO05D004715 1.4e-35 152.9 90 82.2
arahy.Tifrunner.gnm1.ann1.RS9AFF Arachis hypogaea HOM05D000963 ORTHO05D004715 1.4e-35 152.9 90 82.2
arahy.Tifrunner.gnm1.ann1.TDDH8C Arachis hypogaea HOM05D000963 ORTHO05D004715 1.4e-35 152.9 90 82.2
arahy.Tifrunner.gnm1.ann1.UGP0DD Arachis hypogaea HOM05D000963 ORTHO05D004715 1.4e-35 152.9 90 82.2
arahy.Tifrunner.gnm1.ann1.WD30LQ Arachis hypogaea HOM05D000963 ORTHO05D004715 1.4e-35 152.9 90 82.2
arahy.Tifrunner.gnm1.ann1.ZA1EMG Arachis hypogaea HOM05D000963 ORTHO05D004715 1.4e-35 152.9 90 82.2
arahy.Tifrunner.gnm1.ann1.54C0KZ Arachis hypogaea HOM05D000963 ORTHO05D004715 4.0e-35 151.4 90 81.1
arahy.Tifrunner.gnm1.ann1.WSE485 Arachis hypogaea HOM05D000963 ORTHO05D004715 6.8e-35 150.6 90 81.1
Gohir.A01G139826 Gossypium hirsutum HOM05D000963 ORTHO05D004715 1.5e-34 149.4 106 70.8
Gohir.D01G169154 Gossypium hirsutum HOM05D000963 ORTHO05D004715 9.8e-34 146.7 89 79.8
Dinv39831 Davidia involucrata HOM05D000963 ORTHO05D004715 1.3e-33 146.4 80 85.0
Oeu050315.1 Olea europaea HOM05D000963 ORTHO05D004715 1.1e-32 143.3 81 85.2
Lsat_1_v5_gn_1_109481 Lactuca sativa HOM05D000963 ORTHO05D004715 1.4e-32 142.9 89 76.4
Oeu012821.1 Olea europaea HOM05D000963 ORTHO05D004715 2.4e-32 142.1 106 70.8
Sed0011513 Sechium edule HOM05D000963 ORTHO05D004715 2.4e-32 142.1 101 72.3
CsaV3_2G008200 Cucumis sativus L. HOM05D000963 ORTHO05D004715 7.0e-32 140.6 77 84.4
arahy.Tifrunner.gnm1.ann1.0QCF99 Arachis hypogaea HOM05D000963 ORTHO05D004715 9.2e-32 140.2 81 81.5
arahy.Tifrunner.gnm1.ann1.6K111H Arachis hypogaea HOM05D000963 ORTHO05D004715 9.2e-32 140.2 81 81.5
arahy.Tifrunner.gnm1.ann1.B9EW81 Arachis hypogaea HOM05D000963 ORTHO05D004715 9.2e-32 140.2 81 81.5
arahy.Tifrunner.gnm1.ann1.NMB5YK Arachis hypogaea HOM05D000963 ORTHO05D004715 9.2e-32 140.2 81 81.5
arahy.Tifrunner.gnm1.ann1.QIDR5S Arachis hypogaea HOM05D000963 ORTHO05D004715 9.2e-32 140.2 81 81.5
SalBow1G2814 Salvia bowleyana HOM05D000963 ORTHO05D004715 2.0e-31 139.0 82 81.7
SalBow1G5969 Salvia bowleyana HOM05D000963 ORTHO05D004715 2.0e-31 139.0 82 81.7
Actinidia23508 Actinidia chinensis HOM05D000963 ORTHO05D004715 3.5e-31 138.3 79 82.3
Dinv05169 Davidia involucrata HOM05D000963 ORTHO05D004715 1.0e-30 136.7 85 76.5
BraSC59t46506Z Brassica rapa HOM05D000963 ORTHO05D004715 8.6e-30 133.7 76 84.2
arahy.Tifrunner.gnm1.ann1.R4PVYI Arachis hypogaea HOM05D000963 ORTHO05D004715 3.3e-29 131.7 80 77.5
unitig_91.g26522 Utricularia gibba HOM05D000963 ORTHO05D004715 4.3e-29 131.3 69 85.5
unitig_91.g26525 Utricularia gibba HOM05D000963 ORTHO05D004715 4.3e-29 131.3 69 85.5
CSS0016818 Camellia sinensis var. sinensis HOM05D000963 ORTHO05D004715 9.5e-29 130.2 106 64.2
FAN18G1953 Fragaria x ananassa HOM05D000315 ORTHO05D004100 1.6e-28 129.4 89 71.9
arahy.Tifrunner.gnm1.ann1.D5AR02 Arachis hypogaea HOM05D000963 ORTHO05D004715 2.8e-28 128.6 92 72.8
Gorai.002G027900 Gossypium raimondii HOM05D000963 ORTHO05D004715 6.2e-28 127.5 76 77.6
arahy.Tifrunner.gnm1.ann1.LM30Y3 Arachis hypogaea HOM05D000963 ORTHO05D004715 8.0e-28 127.1 81 74.1
Gohir.D01G023469 Gossypium hirsutum HOM05D000963 ORTHO05D004715 5.2e-27 124.4 76 77.6
Phvul.003G259600 Phaseolus vulgaris HOM05D000963 ORTHO05D004715 1.3e-25 119.8 88 68.2
Rhsim12G0135200 Rhododendron simsii HOM05D000963 ORTHO05D004715 2.9e-25 118.6 75 74.7
Gohir.A04G039030 Gossypium hirsutum HOM05D000963 ORTHO05D004715 7.0e-24 114.0 71 77.5
Glyma.06G274000 Glycine max HOM05D000963 ORTHO05D004715 2.7e-23 112.1 91 64.8
SabraPtG0005400 Salix brachista HOM05D000963 ORTHO05D004715 3.5e-23 111.7 74 75.7
Nitab4.5_0012234g0080 Nicotiana tabacum HOM05D000963 ORTHO05D004715 6.0e-23 110.9 81 69.1
BcaNung01516 Brassica carinata HOM05D000963 ORTHO05D004715 6.6e-22 107.5 53 88.7
VMungo0331G0858 Vigna mungo HOM05D000963 ORTHO05D004715 1.9e-21 105.9 58 79.3
Lsat_1_v5_gn_2_90421 Lactuca sativa HOM05D000963 ORTHO05D004715 2.5e-21 105.5 66 80.3
Nitab4.5_0004137g0020 Nicotiana tabacum HOM05D000963 ORTHO05D004715 3.3e-21 105.1 66 83.3
Gohir.D11G164850 Gossypium hirsutum HOM05D000963 ORTHO05D004715 4.3e-21 104.8 64 79.7
Mapoly0147s0015 Marchantia polymorpha HOM05D000963 ORTHO05D004715 1.6e-20 102.8 107 55.1
Sc25g0002020 Simmondsia chinensis HOM05D000963 ORTHO05D004715 3.1e-19 98.6 45 93.3
Psat3g162200 Pisum sativum HOM05D000963 ORTHO05D004715 5.2e-19 97.8 48 89.6
Hma1.2p1_0051F.1_g029250 Hydrangea macrophylla HOM05D000963 ORTHO05D004715 2.6e-18 95.5 43 93.0
DCAR_017253 Daucus carota HOM05D000963 ORTHO05D004715 1.7e-17 92.8 58 77.6
Sabra08G0089800 Salix brachista HOM05D000963 ORTHO05D004715 1.7e-17 92.8 92 57.6
Gohir.A01G139250 Gossypium hirsutum HOM05D000963 ORTHO05D004715 4.9e-17 91.3 46 91.3
Nitab4.5_0007400g0120 Nicotiana tabacum HOM05D000963 ORTHO05D004715 8.3e-17 90.5 61 75.4
Medtr1g105230 Medicago truncatula HOM05D000963 ORTHO05D004715 4.1e-16 88.2 42 90.5
TPR.G27622 Trifolium pratense HOM05D000963 ORTHO05D004715 7.1e-16 87.4 46 84.8
Gohir.A01G119775 Gossypium hirsutum HOM05D000963 ORTHO05D004715 7.8e-15 84.0 54 75.9
Oeu033793.1 Olea europaea HOM05D001982 ORTHO05D003938 1.7e-14 82.8 54 74.1
CAN.G1594.2 Capsicum annuum HOM05D016096 ORTHO05D016167 2.3e-14 82.4 47 80.9
COL.COLO4_03191 Corchorus olitorius HOM05D000963 ORTHO05D004715 3.9e-14 81.6 71 66.2
Potri.002G263451 Populus trichocarpa HOM05D000963 ORTHO05D004715 6.6e-14 80.9 54 74.1
Manes.18G094701 Manihot esculenta HOM05D000963 ORTHO05D004715 8.6e-14 80.5 52 75.0
FvH4_7g01961 Fragaria vesca HOM05D000963 ORTHO05D004715 1.9e-13 79.3 106 47.2
FAN01G1433 Fragaria x ananassa HOM05D000963 ORTHO05D004715 6.8e-11 70.9 35 94.3
BraSC59t46544Z Brassica rapa HOM05D000963 ORTHO05D004715 1.2e-10 70.1 47 74.5
Psat5g119040 Pisum sativum HOM05D000963 ORTHO05D004715 2.0e-10 69.3 84 48.8
BolC2t10589H Brassica oleracea HOM05D000963 ORTHO05D004715 3.4e-10 68.6 34 94.1
BolSC29t60514H Brassica oleracea HOM05D000963 ORTHO05D004715 3.4e-10 68.6 34 94.1
BolSC29t60553H Brassica oleracea HOM05D000963 ORTHO05D004715 3.4e-10 68.6 34 94.1
BolSC35t60711H Brassica oleracea HOM05D000963 ORTHO05D004715 3.4e-10 68.6 34 94.1
BolSC45t60901H Brassica oleracea HOM05D000963 ORTHO05D004715 3.4e-10 68.6 34 94.1
BolSC46t60965H Brassica oleracea HOM05D000963 ORTHO05D004715 3.4e-10 68.6 34 94.1
BolSC49t61150H Brassica oleracea HOM05D000963 ORTHO05D004715 3.4e-10 68.6 34 94.1
Cpa.g.sc302.1 Carica papaya HOM05D000963 ORTHO05D004715 1.3e-09 66.6 41 80.5
Gorai.002G200300 Gossypium raimondii HOM05D000963 ORTHO05D004715 2.9e-09 65.5 35 82.9
BolC2t10606H Brassica oleracea HOM05D000963 ORTHO05D004715 8.4e-09 63.9 35 91.4
Sc21g0003630 Simmondsia chinensis HOM05D000556 ORTHO05D000404 1.2e-07 60.1 32 87.5
EL10Ac7g17374 Beta vulgaris HOM05D000963 ORTHO05D004715 2.1e-07 59.3 37 81.1
arahy.Tifrunner.gnm1.ann1.3DS1LI Arachis hypogaea HOM05D004473 ORTHO05D005652 1.0e-06 57.0 40 72.5
arahy.Tifrunner.gnm1.ann1.SGP77C Arachis hypogaea HOM05D004473 ORTHO05D005652 1.0e-06 57.0 40 72.5
arahy.Tifrunner.gnm1.ann1.QZA5BL Arachis hypogaea HOM05D000963 ORTHO05D004715 1.7e-06 56.2 47 63.8
EL10Ac7g17381 Beta vulgaris HOM05D000963 ORTHO05D004715 3.0e-06 55.5 37 75.7


User provided reference genes

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