Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc01g0005540 Simmondsia chinensis HOM05D003247 ORTHO05D003974 2.1e-299 1031.6 514 100.0
Hund14825 Selenicereus undatus HOM05D003247 ORTHO05D003974 1.7e-256 889.0 514 84.4
Duzib205G1189 Durio zibethinus HOM05D003247 ORTHO05D003974 1.9e-255 885.6 514 84.4
TWI60G0271 Tripterygium wilfordii HOM05D003247 ORTHO05D003974 3.0e-253 878.2 514 84.0
CANSAT35G0036 Cannabis sativa HOM05D003247 ORTHO05D003974 3.9e-253 877.9 514 83.9
Thecc.03G281500 Theobroma cacao HOM05D003247 ORTHO05D003974 3.3e-252 874.8 514 83.7
Manes.02G020950 Manihot esculenta HOM05D003247 ORTHO05D003974 4.3e-252 874.4 514 84.0
PGR031G0275 Punica granatum HOM05D003247 ORTHO05D003974 4.3e-252 874.4 514 82.9
MD14G1107600 Malus domestica HOM05D003247 ORTHO05D003974 1.6e-251 872.5 514 83.3
Potri.003G129500 Populus trichocarpa HOM05D003247 ORTHO05D003974 8.1e-251 870.2 514 83.7
Duzib084G1173 Durio zibethinus HOM05D003247 ORTHO05D003974 1.1e-250 869.8 514 83.5
Actinidia01994 Actinidia chinensis HOM05D003247 ORTHO05D003974 3.1e-250 868.2 505 84.0
TAR636G0433 Trochodendron aralioides HOM05D003247 ORTHO05D003974 3.1e-250 868.2 505 83.6
Cpa.g.sc214.14 Carica papaya HOM05D003247 ORTHO05D003974 6.9e-250 867.1 505 84.4
Sabra01G0077100 Salix brachista HOM05D003247 ORTHO05D003974 6.9e-250 867.1 514 83.1
THA.LOC104809378 Tarenaya hassleriana HOM05D003247 ORTHO05D003974 7.6e-249 863.6 514 83.3
Rhsim02G0233100 Rhododendron simsii HOM05D003247 ORTHO05D003974 1.3e-248 862.8 505 84.0
RhsimUnG0160000 Rhododendron simsii HOM05D003247 ORTHO05D003974 1.3e-248 862.8 505 84.0
Nn1g01570 Nelumbo nucifera HOM05D003247 ORTHO05D003974 1.7e-248 862.4 514 82.1
CSS0019820 Camellia sinensis var. sinensis HOM05D003247 ORTHO05D003974 2.2e-248 862.1 505 83.6
MD06G1086400 Malus domestica HOM05D003247 ORTHO05D003974 4.9e-248 860.9 509 82.9
CSS0047123 Camellia sinensis var. sinensis HOM05D003247 ORTHO05D003974 6.4e-248 860.5 505 83.4
CiPaw.11G133400 Carya illinoinensis HOM05D003247 ORTHO05D003974 8.4e-248 860.1 496 85.5
QL12p032548 Quercus lobata HOM05D003247 ORTHO05D003974 8.4e-248 860.1 501 85.0
Eucgr.D01833 Eucalyptus grandis HOM05D003247 ORTHO05D003974 2.5e-247 858.6 505 82.4
FvH4_5g02730 Fragaria vesca HOM05D003247 ORTHO05D003974 2.5e-247 858.6 514 81.7
RcHm_v2.0_Chr7g0197201 Rosa chinensis HOM05D003247 ORTHO05D003974 9.3e-247 856.7 514 81.7
PSO832G0897 Papaver somniferum HOM05D003247 ORTHO05D003974 1.2e-246 856.3 514 81.7
Ciclev10018808m.g Citrus clementina HOM05D003247 ORTHO05D003974 2.1e-246 855.5 505 83.4
AUR62010702 Chenopodium quinoa HOM05D003247 ORTHO05D003974 4.6e-246 854.4 505 82.4
CDE05G0892 Ceratophyllum demersum HOM05D003247 ORTHO05D003974 1.8e-245 852.4 514 80.5
Dinv37625 Davidia involucrata HOM05D003247 ORTHO05D003974 3.9e-245 851.3 505 82.6
PSO063G5587 Papaver somniferum HOM05D003247 ORTHO05D003974 5.1e-245 850.9 514 81.7
EL10Ac5g12795 Beta vulgaris HOM05D003247 ORTHO05D003974 6.7e-245 850.5 531 79.7
arahy.Tifrunner.gnm1.ann1.5U7DNF Arachis hypogaea HOM05D003247 ORTHO05D003974 8.7e-245 850.1 505 82.0
vmacro11386 Vaccinium macrocarpon HOM05D003247 ORTHO05D003974 8.7e-245 850.1 512 81.8
Carub.0002s0107 Capsella rubella HOM05D003247 ORTHO05D003974 1.5e-244 849.4 514 81.1
AL2G11370 Arabidopsis lyrata HOM05D003247 ORTHO05D003974 1.9e-244 849.0 514 81.1
Aqoxy5G04015 Aquilegia oxysepala HOM05D003247 ORTHO05D003974 2.5e-244 848.6 514 80.2
Gorai.003G157400 Gossypium raimondii HOM05D003247 ORTHO05D003974 3.3e-244 848.2 501 83.2
Dinv38927 Davidia involucrata HOM05D003247 ORTHO05D003974 4.3e-244 847.8 501 82.6
Nn6g33377 Nelumbo nucifera HOM05D003247 ORTHO05D003974 9.6e-244 846.7 499 83.2
GSVIVG01019731001 Vitis vinifera HOM05D003247 ORTHO05D003974 1.3e-243 846.3 496 83.5
FAN08G0767 Fragaria x ananassa HOM05D003247 ORTHO05D003974 2.1e-243 845.5 505 82.0
Gohir.A03G018700 Gossypium hirsutum HOM05D003247 ORTHO05D003974 2.8e-243 845.1 494 83.6
FAN18G0212 Fragaria x ananassa HOM05D003247 ORTHO05D003974 1.1e-242 843.2 503 81.9
arahy.Tifrunner.gnm1.ann1.1Z7M3S Arachis hypogaea HOM05D003247 ORTHO05D003974 5.3e-242 840.9 503 81.3
BcaC02g10366 Brassica carinata HOM05D003247 ORTHO05D003974 5.3e-242 840.9 506 81.8
Cc08_g14910 Coffea canephora HOM05D003247 ORTHO05D003974 6.9e-242 840.5 503 80.9
FAN13G0605 Fragaria x ananassa HOM05D003247 ORTHO05D003974 9.0e-242 840.1 503 81.9
Glyma.08G015900 Glycine max HOM05D003247 ORTHO05D003974 9.0e-242 840.1 514 80.4
ECA240G1820 Erigeron canadensis HOM05D003247 ORTHO05D003974 1.5e-241 839.3 514 78.8
Thhalv10023233m.g Eutrema salsugineum HOM05D003247 ORTHO05D003974 1.5e-241 839.3 506 81.4
PSO210G5648 Papaver somniferum HOM05D003247 ORTHO05D003974 1.5e-241 839.3 514 79.2
CARHR047420 Cardamine hirsuta HOM05D003247 ORTHO05D003974 2.0e-241 839.0 506 81.4
BcaB07g31551 Brassica carinata HOM05D003247 ORTHO05D003974 2.6e-241 838.6 508 81.5
FAN04G2168 Fragaria x ananassa HOM05D003247 ORTHO05D003974 2.6e-241 838.6 503 81.7
HanXRQChr13g0416311 Helianthus annuus HOM05D003247 ORTHO05D003974 2.6e-241 838.6 514 79.0
Sc01g0009690 Simmondsia chinensis HOM05D003247 ORTHO05D003974 2.6e-241 838.6 425 98.1
THA.LOC104815066 Tarenaya hassleriana HOM05D003247 ORTHO05D003974 2.6e-241 838.6 514 80.9
HanXRQChr03g0086871 Helianthus annuus HOM05D003247 ORTHO05D003974 3.4e-241 838.2 514 78.6
Lalb_Chr09g0332971 Lupinus albus HOM05D003247 ORTHO05D003974 3.4e-241 838.2 510 80.6
Gohir.D03G150200 Gossypium hirsutum HOM05D003247 ORTHO05D003974 5.8e-241 837.4 494 82.6
Ca_17516_v3 Cicer arietinum L. HOM05D003247 ORTHO05D003974 1.0e-240 836.6 514 79.6
Prupe.5G103000 Prunus persica HOM05D003247 ORTHO05D003974 1.3e-240 836.3 485 84.5
Sopen08g029560 Solanum pennellii HOM05D003247 ORTHO05D003974 1.7e-240 835.9 514 80.0
AT1G63770 Arabidopsis thaliana HOM05D003247 ORTHO05D003974 4.9e-240 834.3 526 78.7
Nitab4.5_0002975g0050 Nicotiana tabacum HOM05D003247 ORTHO05D003974 4.9e-240 834.3 505 82.0
Lj8A219G33 Lonicera japonica HOM05D003247 ORTHO05D003974 8.4e-240 833.6 510 81.4
Peaxi162Scf00119g00138 Petunia axillaris HOM05D003247 ORTHO05D003974 1.4e-239 832.8 505 80.6
TPR.G12767 Trifolium pratense HOM05D003247 ORTHO05D003974 1.9e-239 832.4 505 80.6
BraA06t23665Z Brassica rapa HOM05D003247 ORTHO05D003974 2.5e-239 832.0 517 79.7
Lj4g0006056 Lotus japonicus HOM05D003247 ORTHO05D003974 4.2e-239 831.2 502 81.3
MBI17_g42619_MAGBIO Magnolia biondii HOM05D003247 ORTHO05D003974 4.2e-239 831.2 505 79.8
Migut.A00742 Erythranthe guttata HOM05D003247 ORTHO05D003974 7.1e-239 830.5 505 79.0
Psat7g031800 Pisum sativum HOM05D003247 ORTHO05D003974 7.1e-239 830.5 514 79.2
VMungo0251G1424 Vigna mungo HOM05D003247 ORTHO05D003974 7.1e-239 830.5 514 78.8
Actinidia14574 Actinidia chinensis HOM05D003247 ORTHO05D003974 9.3e-239 830.1 487 82.3
Glyma.05G209200 Glycine max HOM05D003247 ORTHO05D003974 2.1e-238 828.9 514 79.2
Medtr8g098525 Medicago truncatula HOM05D003247 ORTHO05D003974 2.1e-238 828.9 502 81.5
ATR0680G039 Amborella trichopoda HOM05D003247 ORTHO05D003974 2.7e-238 828.6 514 76.8
Atru.chr9.2165 Acer truncatum HOM05D003247 ORTHO05D003974 3.5e-238 828.2 505 81.2
BolC4t24494H Brassica oleracea HOM05D003247 ORTHO05D003974 4.6e-238 827.8 530 78.1
Lalb_Chr05g0222801 Lupinus albus HOM05D003247 ORTHO05D003974 4.6e-238 827.8 508 79.1
A06p04610 Brassica napus HOM05D003247 ORTHO05D003974 1.8e-237 825.9 519 78.8
Lsat_1_v5_gn_6_86420 Lactuca sativa HOM05D003247 ORTHO05D003974 1.8e-237 825.9 506 78.5
MSTRG.1858 Avicennia marina HOM05D003247 ORTHO05D003974 2.3e-237 825.5 509 78.6
C04p29680 Brassica napus HOM05D003247 ORTHO05D003974 3.9e-237 824.7 517 79.5
THA.LOC104817937 Tarenaya hassleriana HOM05D003247 ORTHO05D003974 6.7e-237 823.9 520 78.7
HPP92_025967 Vanilla planifolia HOM05D003247 ORTHO05D003974 6.7e-237 823.9 508 78.1
Zm00001eb038870 Zea mays HOM05D003247 ORTHO05D003974 1.1e-236 823.2 512 77.9
Haze_08801 Corylus avellana HOM05D003247 ORTHO05D003974 4.3e-236 821.2 503 81.5
Sed0003481 Sechium edule HOM05D003247 ORTHO05D003974 9.7e-236 820.1 511 78.5
Sabra01G0077200 Salix brachista HOM05D003247 ORTHO05D003974 8.2e-235 817.0 514 79.8
PSO210G5645 Papaver somniferum HOM05D003247 ORTHO05D003974 1.4e-234 816.2 514 77.0
MBI18_g02832_MAGBIO Magnolia biondii HOM05D003247 ORTHO05D003974 3.1e-234 815.1 503 78.9
SalBow1G5596 Salvia bowleyana HOM05D003247 ORTHO05D003974 6.9e-234 813.9 505 77.8
DCAR_008373 Daucus carota HOM05D003247 ORTHO05D003974 3.4e-233 811.6 494 78.7
Migut.E01080 Erythranthe guttata HOM05D003247 ORTHO05D003974 4.5e-233 811.2 503 77.1
CAN.G774.61 Capsicum annuum HOM05D003247 ORTHO05D003974 1.7e-232 809.3 496 80.0
Sed0014492 Sechium edule HOM05D003247 ORTHO05D003974 1.1e-231 806.6 509 77.6
Phvul.002G290904 Phaseolus vulgaris HOM05D003247 ORTHO05D003974 1.9e-231 805.8 496 80.2
AUR62017183 Chenopodium quinoa HOM05D003247 ORTHO05D003974 3.9e-229 798.1 505 78.2
BraA06t25281Z Brassica rapa HOM05D003247 ORTHO05D003974 2.0e-228 795.8 506 78.5
Nitab4.5_0001615g0030 Nicotiana tabacum HOM05D003247 ORTHO05D003974 3.3e-228 795.0 477 81.8
CsaV3_5G002690 Cucumis sativus L. HOM05D003247 ORTHO05D003974 6.3e-227 790.8 497 78.1
Ah.02g110410 Amaranthus hybridus HOM05D003247 ORTHO05D003974 4.5e-225 784.6 505 76.4
unitig_0.g1141 Utricularia gibba HOM05D005096 ORTHO05D003974 2.2e-224 782.3 533 72.2
TWI81G0748 Tripterygium wilfordii HOM05D003247 ORTHO05D003974 2.6e-220 768.8 514 75.7
TPR.G28250 Trifolium pratense HOM05D003247 ORTHO05D003974 1.7e-219 766.1 512 75.0
EL10Ac9g20777 Beta vulgaris HOM05D003247 ORTHO05D003974 1.8e-218 762.7 508 74.4
Lalb_Chr05g0224671 Lupinus albus HOM05D003247 ORTHO05D003974 3.5e-217 758.4 506 73.9
Oeu011040.2 Olea europaea HOM05D003247 ORTHO05D003974 2.2e-216 755.7 604 64.9
unitig_61.g26270 Utricularia gibba HOM05D003247 ORTHO05D003974 1.1e-212 743.4 478 75.1
Aa31LG2G950 Aethionema arabicum HOM05D003247 ORTHO05D003974 4.8e-211 738.0 534 72.5
CSS0029032 Camellia sinensis var. sinensis HOM05D003247 ORTHO05D003974 6.3e-211 737.6 437 82.4
SGA_v2.0_scaffold173G39167 Striga asiatica HOM05D003247 ORTHO05D003974 8.2e-211 737.3 465 76.6
MELO3C005688.2 Cucumis melo HOM05D003247 ORTHO05D003974 3.5e-209 731.9 537 70.2
Pp3c26_1330 Physcomitrium patens HOM05D003247 ORTHO05D003974 4.0e-197 691.8 515 64.5
Lsat_1_v5_gn_6_86400 Lactuca sativa HOM05D003247 ORTHO05D003974 9.8e-196 687.2 506 67.0
Mapoly0042s0035 Marchantia polymorpha HOM05D003247 ORTHO05D003974 9.8e-196 687.2 514 65.0
A06p21950 Brassica napus HOM05D003247 ORTHO05D003974 1.2e-190 670.2 424 77.4
Pp3c15_1150 Physcomitrium patens HOM05D003247 ORTHO05D003974 3.6e-190 668.7 515 63.1
AagrBONN_evm.TU.Sc2ySwM_228.2960 Anthoceros agrestis HOM05D003247 ORTHO05D003974 4.0e-189 665.2 512 63.7
Pp3c9_1240 Physcomitrium patens HOM05D003247 ORTHO05D003974 8.9e-189 664.1 515 63.3
SMO119G0190 Selaginella moellendorffii HOM05D003247 ORTHO05D003974 3.3e-183 645.6 517 61.5
SMO119G0209 Selaginella moellendorffii HOM05D003247 ORTHO05D003974 2.1e-182 642.9 516 61.2
SMO119G0357 Selaginella moellendorffii HOM05D003247 ORTHO05D003974 2.1e-182 642.9 516 61.0
SMO351G0363 Selaginella moellendorffii HOM05D003247 ORTHO05D003974 1.8e-181 639.8 517 60.9
Gohir.D08G202250 Gossypium hirsutum HOM05D003247 ORTHO05D003974 1.2e-180 637.1 438 73.1
Gohir.A08G183600 Gossypium hirsutum HOM05D003247 ORTHO05D003974 9.2e-178 627.5 502 65.3
BolC6t35397H Brassica oleracea HOM05D003247 ORTHO05D003974 1.1e-175 620.5 475 68.8
BcaC08g43016 Brassica carinata HOM05D003247 ORTHO05D003974 1.9e-175 619.8 510 64.3
C06p02710 Brassica napus HOM05D003247 ORTHO05D003974 1.2e-174 617.1 514 63.4
CBR_g951 Chara braunii HOM05D003247 ORTHO05D003974 8.9e-173 610.9 514 56.8
Potri.001G101975 Populus trichocarpa HOM05D003247 ORTHO05D003974 3.7e-171 605.5 360 83.6
CBR_g30015 Chara braunii HOM05D003247 ORTHO05D003974 1.1e-167 594.0 561 53.1
SHI07163 Sapria himalayana HOM05D003247 ORTHO05D003974 1.7e-163 580.1 411 69.1
MCO16G652 Micromonas commoda HOM05D003247 ORTHO05D003974 6.4e-155 551.6 516 53.3
HanXRQChr03g0086881 Helianthus annuus HOM05D003247 ORTHO05D003974 8.4e-147 524.6 328 77.1
Lalb_Chr16g0390071 Lupinus albus HOM05D003247 ORTHO05D003974 1.8e-141 506.9 308 81.2
Gorai.004G213400 Gossypium raimondii HOM05D003247 ORTHO05D003974 1.4e-138 497.3 497 55.9
Ah.12g051740 Amaranthus hybridus HOM05D003247 ORTHO05D003974 6.7e-136 488.4 290 80.3
TAR629G1189 Trochodendron aralioides HOM05D003247 ORTHO05D003974 4.9e-131 472.2 463 55.3
Potri.001G102126 Populus trichocarpa HOM05D003247 ORTHO05D003974 1.3e-128 464.2 299 80.6
SMO169G0195 Selaginella moellendorffii HOM05D003247 ORTHO05D003974 5.1e-128 462.2 454 50.2
Cre17.g736650 Chlamydomonas reinhardtii HOM05D003247 ORTHO05D003974 1.5e-127 460.7 551 45.6
CDE08G1495 Ceratophyllum demersum HOM05D003247 ORTHO05D003974 9.3e-122 441.4 272 78.7
PRCOL_00005594 Prasinoderma coloniale HOM05D003247 ORTHO05D003974 5.3e-117 425.6 530 45.1
Ah.12g051750 Amaranthus hybridus HOM05D003247 ORTHO05D003974 5.5e-98 362.5 213 83.1
Medtr8g098545 Medicago truncatula HOM05D003247 ORTHO05D003974 1.8e-93 347.4 291 64.9
MCO13G113 Micromonas commoda HOM05D003247 ORTHO05D003974 2.2e-86 323.9 551 37.7
Zm00001eb326750 Zea mays HOM05D003247 ORTHO05D003974 1.6e-68 264.6 161 77.6
Zm00001eb070300 Zea mays HOM05D003247 ORTHO05D003974 2.3e-64 250.8 147 81.6
Lalb_Chr16g0390081 Lupinus albus HOM05D003247 ORTHO05D003974 6.4e-62 242.7 160 73.1
Medtr8g098535 Medicago truncatula HOM05D003247 ORTHO05D003974 6.6e-59 232.6 135 78.5
Potri.001G102051 Populus trichocarpa HOM05D003247 ORTHO05D003974 1.5e-58 231.5 127 85.8
Cre04.g213250 Chlamydomonas reinhardtii HOM05D003247 ORTHO05D003974 1.3e-54 218.4 404 35.9
HanXRQChr07g0190431 Helianthus annuus HOM05D003247 ORTHO05D003974 8.1e-49 199.1 115 82.6
C07p00320 Brassica napus HOM05D003247 ORTHO05D032812 8.9e-48 195.7 156 62.8
CDE08G0631 Ceratophyllum demersum HOM05D003247 ORTHO05D003974 3.3e-42 177.2 108 78.7
COL.COLO4_00113 Corchorus olitorius HOM05D003247 ORTHO05D003974 3.8e-38 163.7 90 88.9
SalBow1G0073 Salvia bowleyana HOM05D003247 ORTHO05D003974 4.6e-36 156.8 88 84.1
BcaC06g36754 Brassica carinata HOM05D003247 ORTHO05D032812 2.3e-35 154.5 95 76.8
PSO149G0001 Papaver somniferum HOM05D003247 ORTHO05D003974 2.8e-33 147.5 81 85.2
ClCG01G002580 Citrullus lanatus HOM05D003247 ORTHO05D003974 6.0e-28 129.8 65 90.8
BolC7t40481H Brassica oleracea HOM05D003247 ORTHO05D032812 1.3e-27 128.6 78 75.6
CBR_g30016 Chara braunii HOM05D003247 ORTHO05D003974 9.0e-16 89.4 199 32.7
C07p00300 Brassica napus HOM05D003247 ORTHO05D042289 4.5e-15 87.0 105 46.7
BolC7t40479H Brassica oleracea HOM05D003247 ORTHO05D042289 4.2e-13 80.5 86 50.0
Lsat_1_v5_gn_2_26081 Lactuca sativa HOM05D003247 ORTHO05D002149 1.1e-10 72.4 38 78.9
Lsat_1_v5_gn_5_94840 Lactuca sativa HOM05D002109 ORTHO05D002149 2.5e-10 71.2 38 78.9
ECA240G2658 Erigeron canadensis HOM05D000167 ORTHO05D000994 4.1e-08 63.9 50 62.0


User provided reference genes

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