Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc01g0005330 Simmondsia chinensis HOM05D000367 ORTHO05D037473 5.5e-68 260.8 126 100.0
Sc11g0004250 Simmondsia chinensis HOM05D000367 ORTHO05D037473 6.0e-22 107.8 76 75.0
Sc12g0008740 Simmondsia chinensis HOM05D000367 ORTHO05D001438 1.0e-13 80.5 47 83.0
ECA234G2864 Erigeron canadensis HOM05D000367 ORTHO05D001438 1.5e-12 76.6 48 75.0
HanXRQChr10g0302831 Helianthus annuus HOM05D000367 ORTHO05D001438 1.5e-12 76.6 48 75.0
HanXRQChr12g0361561 Helianthus annuus HOM05D000367 ORTHO05D001438 1.5e-12 76.6 48 75.0
Lsat_1_v5_gn_5_131441 Lactuca sativa HOM05D000367 ORTHO05D001438 1.5e-12 76.6 48 75.0
Actinidia15977 Actinidia chinensis HOM05D000367 ORTHO05D001438 2.5e-12 75.9 47 76.6
Hma1.2p1_0242F.1_g100660 Hydrangea macrophylla HOM05D000367 ORTHO05D001438 2.5e-12 75.9 47 76.6
FAN09G1569 Fragaria x ananassa HOM05D000367 ORTHO05D001438 3.3e-12 75.5 48 75.0
Peaxi162Scf00332g00632 Petunia axillaris HOM05D000367 ORTHO05D001438 3.3e-12 75.5 48 75.0
CAN.G407.75 Capsicum annuum HOM05D000367 ORTHO05D001438 4.3e-12 75.1 48 75.0
PGR031G2348 Punica granatum HOM05D000367 ORTHO05D001438 4.3e-12 75.1 47 76.6
MD17G1213500 Malus domestica HOM05D000367 ORTHO05D001438 5.6e-12 74.7 48 75.0
Rhsim12G0190700 Rhododendron simsii HOM05D000367 ORTHO05D001438 5.6e-12 74.7 47 74.5
Aqoxy7G01860 Aquilegia oxysepala HOM05D000367 ORTHO05D001438 7.4e-12 74.3 48 70.8
Dinv30615 Davidia involucrata HOM05D000367 ORTHO05D001438 7.4e-12 74.3 47 74.5
Lj5A74G67 Lonicera japonica HOM05D000367 ORTHO05D001438 7.4e-12 74.3 48 70.8
Hund06553 Selenicereus undatus HOM05D000367 ORTHO05D001438 7.4e-12 74.3 47 76.6
Solyc03g116790.4 Solanum lycopersicum HOM05D000367 ORTHO05D001438 7.4e-12 74.3 48 70.8
Sopen03g035710 Solanum pennellii HOM05D000367 ORTHO05D001438 7.4e-12 74.3 48 70.8
vmacro16889 Vaccinium macrocarpon HOM05D000367 ORTHO05D001438 7.4e-12 74.3 47 76.6
Cc04_g04480 Coffea canephora HOM05D000367 ORTHO05D001438 9.6e-12 73.9 48 70.8
FvH4_6g29530 Fragaria vesca HOM05D000367 ORTHO05D001438 9.6e-12 73.9 47 74.5
FAN02G2757 Fragaria x ananassa HOM05D000367 ORTHO05D001438 9.6e-12 73.9 47 74.5
Eucgr.J03072 Eucalyptus grandis HOM05D000367 ORTHO05D001438 1.3e-11 73.6 47 72.3
Actinidia08793 Actinidia chinensis HOM05D000367 ORTHO05D001438 1.6e-11 73.2 47 72.3
VMungo1080G1849 Vigna mungo HOM05D000367 ORTHO05D001438 1.6e-11 73.2 47 72.3
Zm00001eb258200 Zea mays HOM05D000367 ORTHO05D001438 1.6e-11 73.2 47 74.5
EL10Ac9g21879 Beta vulgaris HOM05D000367 ORTHO05D001438 2.1e-11 72.8 47 74.5
Nitab4.5_0008560g0040 Nicotiana tabacum HOM05D000367 ORTHO05D001438 2.1e-11 72.8 57 63.2
Oeu018808.1 Olea europaea HOM05D000367 ORTHO05D001438 2.1e-11 72.8 48 70.8
PSO017G4937 Papaver somniferum HOM05D000367 ORTHO05D001438 2.1e-11 72.8 47 70.2
PSO170G0494 Papaver somniferum HOM05D000367 ORTHO05D001438 2.1e-11 72.8 47 70.2
RcHm_v2.0_Chr2g0135071 Rosa chinensis HOM05D000367 ORTHO05D001438 2.1e-11 72.8 48 70.8
Haze_16570 Corylus avellana HOM05D000367 ORTHO05D001438 2.8e-11 72.4 47 72.3
DCAR_025519 Daucus carota HOM05D000367 ORTHO05D001438 2.8e-11 72.4 47 72.3
Dinv38128 Davidia involucrata HOM05D000367 ORTHO05D001438 2.8e-11 72.4 47 72.3
Nn8g39531 Nelumbo nucifera HOM05D001442 ORTHO05D001438 2.8e-11 72.4 47 70.2
Sed0006472 Sechium edule HOM05D000367 ORTHO05D001438 2.8e-11 72.4 47 70.2
Migut.D01083 Erythranthe guttata HOM05D000367 ORTHO05D001438 3.6e-11 72.0 48 72.9
Glyma.15G006900 Glycine max HOM05D000367 ORTHO05D001438 3.6e-11 72.0 47 70.2
Nitab4.5_0003463g0030 Nicotiana tabacum HOM05D000367 ORTHO05D001438 3.6e-11 72.0 48 70.8
Lj3g0006241 Lotus japonicus HOM05D000367 ORTHO05D001438 4.8e-11 71.6 47 70.2
MBI15_g41550_MAGBIO Magnolia biondii HOM05D000367 ORTHO05D001438 4.8e-11 71.6 47 74.5
arahy.Tifrunner.gnm1.ann1.HU2JKE Arachis hypogaea HOM05D000367 ORTHO05D001438 6.2e-11 71.2 47 68.1
arahy.Tifrunner.gnm1.ann1.L74AP1 Arachis hypogaea HOM05D000367 ORTHO05D001438 6.2e-11 71.2 47 68.1
Cfa001954 Carpinus fangiana HOM05D000367 ORTHO05D001438 6.2e-11 71.2 47 70.2
CANSAT56G1125 Cannabis sativa HOM05D000367 ORTHO05D001438 8.1e-11 70.9 48 70.8
FAN05G0721 Fragaria x ananassa HOM05D000367 ORTHO05D001438 8.1e-11 70.9 47 72.3
QL05p030721 Quercus lobata HOM05D000367 ORTHO05D001438 8.1e-11 70.9 47 70.2
TWI18G1067 Tripterygium wilfordii HOM05D000367 ORTHO05D001438 8.1e-11 70.9 47 70.2
AUR62016329 Chenopodium quinoa HOM05D000367 ORTHO05D001438 1.1e-10 70.5 47 66.0
Ca_01052_v3 Cicer arietinum L. HOM05D000367 ORTHO05D001438 1.1e-10 70.5 47 68.1
Manes.11G058000 Manihot esculenta HOM05D000367 ORTHO05D001438 1.1e-10 70.5 47 70.2
GSVIVG01017355001 Vitis vinifera HOM05D000367 ORTHO05D001438 1.1e-10 70.5 47 70.2
CiPaw.01G249000 Carya illinoinensis HOM05D000367 ORTHO05D001438 1.4e-10 70.1 47 68.1
COL.COLO4_11930 Corchorus olitorius HOM05D000367 ORTHO05D001438 1.4e-10 70.1 47 70.2
Zm00001eb192080 Zea mays HOM05D000367 ORTHO05D001438 1.4e-10 70.1 47 72.3
MSTRG.9421 Avicennia marina HOM05D000367 ORTHO05D001438 1.8e-10 69.7 48 70.8
ClCG07G012190 Citrullus lanatus HOM05D000367 ORTHO05D001438 1.8e-10 69.7 47 68.1
MELO3C017839.2 Cucumis melo HOM05D000367 ORTHO05D001438 1.8e-10 69.7 47 68.1
Potri.003G031800 Populus trichocarpa HOM05D000367 ORTHO05D001438 1.8e-10 69.7 47 68.1
Thecc.06G029100 Theobroma cacao HOM05D000367 ORTHO05D001438 1.8e-10 69.7 47 68.1
Cpa.g.sc67.41 Carica papaya HOM05D000367 ORTHO05D001438 2.4e-10 69.3 47 70.2
CDE01G0238 Ceratophyllum demersum HOM05D000367 ORTHO05D001438 2.4e-10 69.3 47 68.1
Sed0010779 Sechium edule HOM05D000367 ORTHO05D001438 2.4e-10 69.3 47 68.1
SGA_v2.0_scaffold26G11345 Striga asiatica HOM05D000367 ORTHO05D001438 2.4e-10 69.3 48 68.8
AUR62011510 Chenopodium quinoa HOM05D000367 ORTHO05D001438 3.1e-10 68.9 47 63.8
Ciclev10025441m.g Citrus clementina HOM05D000367 ORTHO05D001438 3.1e-10 68.9 47 68.1
Phvul.005G178800 Phaseolus vulgaris HOM05D000367 ORTHO05D001438 3.1e-10 68.9 54 64.8
CsaV3_4G001970 Cucumis sativus L. HOM05D000367 ORTHO05D001438 4.0e-10 68.6 47 66.0
Prupe.3G088900 Prunus persica HOM05D000367 ORTHO05D001438 4.0e-10 68.6 47 70.2
TWI75G0679 Tripterygium wilfordii HOM05D000367 ORTHO05D001438 5.3e-10 68.2 47 66.0
TAR625G0785 Trochodendron aralioides HOM05D000367 ORTHO05D001438 5.3e-10 68.2 47 68.1
Medtr2g104030 Medicago truncatula HOM05D000367 ORTHO05D001438 6.9e-10 67.8 47 68.1
Gohir.A06G113200 Gossypium hirsutum HOM05D000367 ORTHO05D001438 9.0e-10 67.4 47 68.1
unitig_60.g25609 Utricularia gibba HOM05D000367 ORTHO05D001438 9.0e-10 67.4 48 70.8
AT1G80030 Arabidopsis thaliana HOM05D000367 ORTHO05D001438 1.2e-09 67.0 47 68.1
Carub.0002s2749 Capsella rubella HOM05D000367 ORTHO05D001438 1.2e-09 67.0 47 68.1
Duzib235G0501 Durio zibethinus HOM05D000367 ORTHO05D001438 1.2e-09 67.0 47 66.0
Os02g0804500 Oryza sativa ssp. japonica HOM05D000367 ORTHO05D001438 1.2e-09 67.0 47 72.3
Sp5g35800 Schrenkiella parvula HOM05D000367 ORTHO05D001438 1.2e-09 67.0 47 68.1
BcaC08g47566 Brassica carinata HOM05D000367 ORTHO05D001438 1.5e-09 66.6 47 66.0
A07p45450 Brassica napus HOM05D000367 ORTHO05D001438 1.5e-09 66.6 47 66.0
BraA07t32049Z Brassica rapa HOM05D000367 ORTHO05D001438 1.5e-09 66.6 47 66.0
THA.LOC104800440 Tarenaya hassleriana HOM05D000367 ORTHO05D001438 1.5e-09 66.6 47 68.1
ATR1134G116 Amborella trichopoda HOM05D000367 ORTHO05D001438 2.0e-09 66.2 47 66.0
AagrBONN_evm.TU.Sc2ySwM_228.263 Anthoceros agrestis HOM05D000367 ORTHO05D001438 2.0e-09 66.2 47 66.0
HPP92_017056 Vanilla planifolia HOM05D000367 ORTHO05D001438 2.0e-09 66.2 47 66.0
AL2G41510 Arabidopsis lyrata HOM05D000367 ORTHO05D001438 2.6e-09 65.9 47 68.1
Thhalv10018440m.g Eutrema salsugineum HOM05D000367 ORTHO05D001438 2.6e-09 65.9 47 66.0
Gohir.D06G120600 Gossypium hirsutum HOM05D000367 ORTHO05D001438 2.6e-09 65.9 47 68.1
Lalb_Chr24g0395461 Lupinus albus HOM05D000367 ORTHO05D001438 2.6e-09 65.9 47 68.1
C06p54280 Brassica napus HOM05D000367 ORTHO05D001438 3.4e-09 65.5 47 63.8
BolC6t40441H Brassica oleracea HOM05D000367 ORTHO05D001438 3.4e-09 65.5 47 63.8
Gorai.010G140900 Gossypium raimondii HOM05D000367 ORTHO05D001438 3.4e-09 65.5 47 68.1
Sabra03G0018100 Salix brachista HOM05D000367 ORTHO05D001438 3.4e-09 65.5 47 66.0
CARHR074450 Cardamine hirsuta HOM05D000367 ORTHO05D001438 4.5e-09 65.1 48 64.6
Psat5g303520 Pisum sativum HOM05D000367 ORTHO05D001438 5.8e-09 64.7 47 63.8
Atru.chr1.2905 Acer truncatum HOM05D000367 ORTHO05D001438 1.7e-08 63.2 47 59.6
TPR.G37168 Trifolium pratense HOM05D000367 ORTHO05D001438 1.7e-08 63.2 47 63.8
Pp3c7_3290 Physcomitrium patens HOM05D000367 ORTHO05D001438 6.4e-08 61.2 48 62.5
CBR_g23776 Chara braunii HOM05D000367 ORTHO05D001438 3.2e-07 58.9 48 58.3
Aa31LG4G310 Aethionema arabicum HOM05D000030 ORTHO05D001438 4.2e-07 58.5 47 63.8
Pp3c18_2150 Physcomitrium patens HOM05D000367 ORTHO05D001438 5.5e-07 58.2 48 54.2
SEGI_23212 Sequoiadendron giganteum HOM05D000367 ORTHO05D001438 5.5e-07 58.2 48 54.2
Mapoly0030s0106 Marchantia polymorpha HOM05D000367 ORTHO05D001438 2.1e-06 56.2 48 56.2
RcHm_v2.0_Chr2g0134611 Rosa chinensis HOM05D000367 ORTHO05D037473 2.1e-06 56.2 36 75.0
Pp3c22_21460 Physcomitrium patens HOM05D000367 ORTHO05D001438 2.7e-06 55.8 47 57.4


User provided reference genes

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