Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc01g0004580 Simmondsia chinensis HOM05D002584 ORTHO05D002736 1.9e-150 535.8 275 100.0
Sc20g0001920 Simmondsia chinensis HOM05D011919 ORTHO05D014264 3.5e-51 206.1 179 60.9
Sc18g0004840 Simmondsia chinensis HOM05D002584 ORTHO05D002736 5.3e-39 165.6 92 83.7
Sc10g0005390 Simmondsia chinensis HOM05D002584 ORTHO05D002736 4.5e-30 136.0 86 76.7
Sc20g0002670 Simmondsia chinensis HOM05D002584 ORTHO05D002736 2.1e-27 127.1 86 72.1
Sc10g0006850 Simmondsia chinensis HOM05D011919 ORTHO05D014264 3.9e-26 122.9 70 82.9
Sc18g0004620 Simmondsia chinensis HOM05D011919 ORTHO05D014264 1.8e-23 114.0 66 83.3
Sc01g0004940 Simmondsia chinensis HOM05D002584 ORTHO05D002736 1.2e-22 111.3 107 55.1
Dinv37552 Davidia involucrata HOM05D002584 ORTHO05D002736 5.0e-21 105.9 122 49.2
Cfa012844 Carpinus fangiana HOM05D002584 ORTHO05D002736 5.5e-20 102.4 125 45.6
QL02p031474 Quercus lobata HOM05D002584 ORTHO05D002736 9.4e-20 101.7 118 46.6
Dinv38860 Davidia involucrata HOM05D002584 ORTHO05D002736 4.7e-19 99.4 96 56.2
Haze_08671 Corylus avellana HOM05D002584 ORTHO05D002736 3.9e-18 96.3 101 50.5
Actinidia34198 Actinidia chinensis HOM05D002584 ORTHO05D002736 2.0e-17 94.0 94 48.9
ClCG07G014870 Citrullus lanatus HOM05D002584 ORTHO05D002736 5.7e-17 92.4 234 30.8
Prupe.2G307000 Prunus persica HOM05D002584 ORTHO05D002736 5.7e-17 92.4 118 43.2
AUR62041778 Chenopodium quinoa HOM05D002584 ORTHO05D002736 2.8e-16 90.1 112 43.8
Dinv28338 Davidia involucrata HOM05D002584 ORTHO05D002736 4.8e-16 89.4 126 38.9
Oeu060971.1 Olea europaea HOM05D002584 ORTHO05D002736 8.2e-16 88.6 128 39.8
Nn3g19082 Nelumbo nucifera HOM05D002584 ORTHO05D002736 1.1e-15 88.2 91 48.4
PSO063G1767 Papaver somniferum HOM05D002584 ORTHO05D002736 1.4e-15 87.8 124 41.9
Lj1A1012T85 Lonicera japonica HOM05D002584 ORTHO05D002736 1.8e-15 87.4 130 38.5
TAR375G0150 Trochodendron aralioides HOM05D002584 ORTHO05D002736 1.8e-15 87.4 94 47.9
Actinidia27338 Actinidia chinensis HOM05D002584 ORTHO05D002736 3.1e-15 86.7 95 46.3
PSO063G5339 Papaver somniferum HOM05D002584 ORTHO05D002736 4.1e-15 86.3 94 46.8
Sc16g0004280 Simmondsia chinensis HOM05D011919 ORTHO05D014264 4.1e-15 86.3 97 48.5
MD07G1284800 Malus domestica HOM05D002584 ORTHO05D002736 5.3e-15 85.9 120 40.0
PSO339G0177 Papaver somniferum HOM05D002584 ORTHO05D002736 5.3e-15 85.9 94 46.8
HanXRQChr09g0253091 Helianthus annuus HOM05D002584 ORTHO05D002736 7.0e-15 85.5 132 39.4
EL10Ac4g09958 Beta vulgaris HOM05D002584 ORTHO05D002736 1.2e-14 84.7 127 38.6
Atru.chr9.2048 Acer truncatum HOM05D002584 ORTHO05D002736 1.6e-14 84.3 97 46.4
Cfa016361 Carpinus fangiana HOM05D002584 ORTHO05D002736 1.6e-14 84.3 121 40.5
Haze_00110 Corylus avellana HOM05D002584 ORTHO05D002736 1.6e-14 84.3 121 40.5
Potri.015G022500 Populus trichocarpa HOM05D002584 ORTHO05D002736 2.6e-14 83.6 123 39.8
Lsat_1_v5_gn_9_57421 Lactuca sativa HOM05D002584 ORTHO05D002736 4.5e-14 82.8 121 39.7
Atru.chr1.263 Acer truncatum HOM05D002584 ORTHO05D002736 5.9e-14 82.4 124 41.1
Manes.01G045600 Manihot esculenta HOM05D002584 ORTHO05D002736 5.9e-14 82.4 90 51.1
ClCG05G008700 Citrullus lanatus HOM05D002584 ORTHO05D002736 7.7e-14 82.0 121 41.3
Rhsim03G0198700 Rhododendron simsii HOM05D002584 ORTHO05D002736 7.7e-14 82.0 94 43.6
Rhsim07G0084300 Rhododendron simsii HOM05D002584 ORTHO05D002736 1.0e-13 81.6 96 42.7
PGSC0003DMG400009100 Solanum tuberosum HOM05D002584 ORTHO05D002736 1.0e-13 81.6 91 44.0
MD01G1215100 Malus domestica HOM05D002584 ORTHO05D002736 1.3e-13 81.3 121 38.0
Nitab4.5_0002589g0030 Nicotiana tabacum HOM05D002584 ORTHO05D002736 1.3e-13 81.3 95 43.2
Sabra15G0016800 Salix brachista HOM05D002584 ORTHO05D002736 1.7e-13 80.9 120 40.8
GSVIVG01028743001 Vitis vinifera HOM05D002584 ORTHO05D002736 1.7e-13 80.9 127 37.0
Cfa016360 Carpinus fangiana HOM05D002584 ORTHO05D002736 2.2e-13 80.5 118 39.8
Ciclev10004699m.g Citrus clementina HOM05D002584 ORTHO05D002736 2.2e-13 80.5 118 38.1
Duzib205G0163 Durio zibethinus HOM05D002584 ORTHO05D002736 2.2e-13 80.5 94 45.7
Solyc03g007420.3 Solanum lycopersicum HOM05D002584 ORTHO05D002736 2.2e-13 80.5 91 45.1
Lj1g0015870 Lotus japonicus HOM05D002584 ORTHO05D002736 3.8e-13 79.7 91 44.0
PSO017G4509 Papaver somniferum HOM05D002584 ORTHO05D002736 3.8e-13 79.7 93 45.2
Actinidia22714 Actinidia chinensis HOM05D002584 ORTHO05D002736 5.0e-13 79.3 123 37.4
Gorai.008G270900 Gossypium raimondii HOM05D002584 ORTHO05D002736 5.0e-13 79.3 123 37.4
Nitab4.5_0000473g0110 Nicotiana tabacum HOM05D002584 ORTHO05D002736 5.0e-13 79.3 94 42.6
Actinidia08626 Actinidia chinensis HOM05D002584 ORTHO05D002736 6.5e-13 79.0 82 46.3
MELO3C026935.2 Cucumis melo HOM05D002584 ORTHO05D002736 6.5e-13 79.0 119 41.2
DCAR_005024 Daucus carota HOM05D002584 ORTHO05D002736 6.5e-13 79.0 121 41.3
Lj1g0020480 Lotus japonicus HOM05D002584 ORTHO05D002736 6.5e-13 79.0 119 36.1
Sopen03g003380 Solanum pennellii HOM05D002584 ORTHO05D002736 6.5e-13 79.0 91 44.0
Thecc.03G192600 Theobroma cacao HOM05D002584 ORTHO05D002736 6.5e-13 79.0 94 44.7
arahy.Tifrunner.gnm1.ann1.PZ4M2K Arachis hypogaea HOM05D002584 ORTHO05D002736 8.5e-13 78.6 119 39.5
Haze_00109 Corylus avellana HOM05D002584 ORTHO05D002736 8.5e-13 78.6 94 44.7
CsaV3_4G006400 Cucumis sativus L. HOM05D002584 ORTHO05D002736 8.5e-13 78.6 127 39.4
SGA_v2.0_scaffold192G40581 Striga asiatica HOM05D002584 ORTHO05D002736 8.5e-13 78.6 121 35.5
Gohir.A12G251900 Gossypium hirsutum HOM05D002584 ORTHO05D002736 1.1e-12 78.2 123 36.6
EL10Ac3g05348 Beta vulgaris HOM05D002584 ORTHO05D002736 1.5e-12 77.8 91 46.2
PSO210G0413 Papaver somniferum HOM05D002584 ORTHO05D002736 1.5e-12 77.8 124 35.5
SalBow4G3348 Salvia bowleyana HOM05D002584 ORTHO05D002736 1.5e-12 77.8 127 37.0
vmacro06576 Vaccinium macrocarpon HOM05D002584 ORTHO05D002736 1.9e-12 77.4 93 44.1
Eucgr.K00328 Eucalyptus grandis HOM05D002584 ORTHO05D002736 2.5e-12 77.0 124 37.9
Gohir.D12G252800 Gossypium hirsutum HOM05D002584 ORTHO05D002736 2.5e-12 77.0 123 37.4
Gohir.D12G253600 Gossypium hirsutum HOM05D002584 ORTHO05D002736 2.5e-12 77.0 123 37.4
PGR142G0759 Punica granatum HOM05D002584 ORTHO05D002736 2.5e-12 77.0 94 46.8
PSO170G2676 Papaver somniferum HOM05D002584 ORTHO05D002736 4.2e-12 76.3 132 34.8
PSO832G1019 Papaver somniferum HOM05D002584 ORTHO05D002736 4.2e-12 76.3 100 42.0
CANSAT21G0945 Cannabis sativa HOM05D002584 ORTHO05D002736 5.5e-12 75.9 121 38.0
Cc02_g01900 Coffea canephora HOM05D002584 ORTHO05D002736 5.5e-12 75.9 126 36.5
PSO591G0137 Papaver somniferum HOM05D002584 ORTHO05D002736 9.4e-12 75.1 99 41.4
PSO675G1890 Papaver somniferum HOM05D002584 ORTHO05D002736 9.4e-12 75.1 133 36.8
RcHm_v2.0_Chr1g0380081 Rosa chinensis HOM05D002584 ORTHO05D002736 9.4e-12 75.1 121 38.0
Hund04830 Selenicereus undatus HOM05D002584 ORTHO05D002736 9.4e-12 75.1 91 45.1
MELO3C016311.2 Cucumis melo HOM05D002584 ORTHO05D002736 1.6e-11 74.3 90 45.6
HanXRQChr09g0253061 Helianthus annuus HOM05D002584 ORTHO05D002736 1.6e-11 74.3 121 36.4
Manes.06G157000 Manihot esculenta HOM05D002584 ORTHO05D002736 1.6e-11 74.3 120 36.7
MSTRG.8680 Avicennia marina HOM05D002584 ORTHO05D002736 2.1e-11 73.9 93 44.1
Hund11407 Selenicereus undatus HOM05D002584 ORTHO05D002736 2.1e-11 73.9 92 41.3
Sed0013734 Sechium edule HOM05D002584 ORTHO05D002736 2.7e-11 73.6 95 40.0
CiPaw.05G257900 Carya illinoinensis HOM05D002584 ORTHO05D002736 3.6e-11 73.2 122 35.2
TPR.G33314 Trifolium pratense HOM05D002584 ORTHO05D002736 3.6e-11 73.2 122 34.4
Cc08_g15750 Coffea canephora HOM05D002584 ORTHO05D002736 6.1e-11 72.4 95 40.0
HanXRQChr09g0253081 Helianthus annuus HOM05D002584 ORTHO05D002736 6.1e-11 72.4 114 36.8
Os01g0221300 Oryza sativa ssp. japonica HOM05D002584 ORTHO05D002736 6.1e-11 72.4 93 41.9
PSO832G4482 Papaver somniferum HOM05D002584 ORTHO05D002736 6.1e-11 72.4 119 39.5
Sed0024155 Sechium edule HOM05D002584 ORTHO05D002736 6.1e-11 72.4 96 40.6
Aqoxy7G01617 Aquilegia oxysepala HOM05D002584 ORTHO05D002736 8.0e-11 72.0 94 41.5
PSO675G1901 Papaver somniferum HOM05D002584 ORTHO05D002736 8.0e-11 72.0 94 41.5
VMungo1309G2151 Vigna mungo HOM05D002584 ORTHO05D002736 8.0e-11 72.0 112 35.7
ATR1093G048 Amborella trichopoda HOM05D002584 ORTHO05D002736 1.0e-10 71.6 94 41.5
Migut.F00244 Erythranthe guttata HOM05D002584 ORTHO05D002736 1.0e-10 71.6 117 35.0
QL09p010995 Quercus lobata HOM05D002584 ORTHO05D002736 1.0e-10 71.6 121 36.4
Sc02g0001990 Simmondsia chinensis HOM05D040497 ORTHO05D037606 1.8e-10 70.9 32 96.9
COL.COLO4_35658 Corchorus olitorius HOM05D002584 ORTHO05D002736 2.3e-10 70.5 91 40.7
PSO675G0694 Papaver somniferum HOM05D002584 ORTHO05D002736 4.0e-10 69.7 94 42.6
Phvul.009G137300 Phaseolus vulgaris HOM05D002584 ORTHO05D002736 4.0e-10 69.7 98 36.7
Sabra14G0028500 Salix brachista HOM05D002584 ORTHO05D002736 4.0e-10 69.7 91 44.0
PSO063G5830 Papaver somniferum HOM05D002584 ORTHO05D002736 8.8e-10 68.6 101 38.6
Oeu046819.1 Olea europaea HOM05D002584 ORTHO05D002736 1.1e-09 68.2 94 39.4
Zm00001eb119710 Zea mays HOM05D002584 ORTHO05D002736 1.1e-09 68.2 93 39.8
PSO764G0213 Papaver somniferum HOM05D002584 ORTHO05D002736 1.5e-09 67.8 99 43.4
Ciclev10019635m.g Citrus clementina HOM05D002584 ORTHO05D002736 2.0e-09 67.4 106 39.6
Medtr1g028620 Medicago truncatula HOM05D002584 ORTHO05D002736 2.0e-09 67.4 122 34.4
Potri.014G039200 Populus trichocarpa HOM05D002584 ORTHO05D002736 2.0e-09 67.4 92 42.4
Eucgr.E00841 Eucalyptus grandis HOM05D002584 ORTHO05D002736 3.3e-09 66.6 110 40.9
BcaC01g06231 Brassica carinata HOM05D002584 ORTHO05D002736 4.4e-09 66.2 91 39.6
C03p17860 Brassica napus HOM05D002584 ORTHO05D002736 4.4e-09 66.2 91 39.6
BolC3t14193H Brassica oleracea HOM05D002584 ORTHO05D002736 4.4e-09 66.2 91 39.6
MSTRG.1820 Avicennia marina HOM05D002584 ORTHO05D002736 5.7e-09 65.9 90 41.1
arahy.Tifrunner.gnm1.ann1.84BZB4 Arachis hypogaea HOM05D002584 ORTHO05D002736 7.5e-09 65.5 102 39.2
Hma1.2p1_0952F.1_g240875 Hydrangea macrophylla HOM05D002584 ORTHO05D002736 1.7e-08 64.3 54 55.6
Hma1.2p1_0952F.1_g240890 Hydrangea macrophylla HOM05D002584 ORTHO05D002736 1.7e-08 64.3 54 55.6
A03p15280 Brassica napus HOM05D002584 ORTHO05D002736 2.2e-08 63.9 91 38.5
BraA03t10821Z Brassica rapa HOM05D002584 ORTHO05D002736 2.2e-08 63.9 91 38.5
PSO782G5749 Papaver somniferum HOM05D002584 ORTHO05D002736 2.2e-08 63.9 101 37.6
MBI06_g22400_MAGBIO Magnolia biondii HOM05D002584 ORTHO05D002736 3.7e-08 63.2 112 34.8
Sabra01G0070500 Salix brachista HOM05D002584 ORTHO05D002736 3.7e-08 63.2 78 47.4
PSO675G5115 Papaver somniferum HOM05D002584 ORTHO05D002736 4.8e-08 62.8 91 42.9
ECA232G0187 Erigeron canadensis HOM05D002584 ORTHO05D002736 6.3e-08 62.4 91 38.5
AUR62006155 Chenopodium quinoa HOM05D002584 ORTHO05D002736 8.2e-08 62.0 99 36.4
PSO732G0710 Papaver somniferum HOM05D002584 ORTHO05D002736 1.1e-07 61.6 91 42.9
PSO675G6667 Papaver somniferum HOM05D002584 ORTHO05D002736 1.4e-07 61.2 102 36.3
Solyc08g082000.4 Solanum lycopersicum HOM05D002584 ORTHO05D002736 1.4e-07 61.2 129 30.2
PGSC0003DMG400012162 Solanum tuberosum HOM05D002584 ORTHO05D002736 4.1e-07 59.7 117 29.1
PSO732G0732 Papaver somniferum HOM05D002584 ORTHO05D002736 5.3e-07 59.3 92 35.9
Ah.07g206030 Amaranthus hybridus HOM05D002584 ORTHO05D002736 7.0e-07 58.9 106 34.0
EL10Ac5g12881 Beta vulgaris HOM05D002584 ORTHO05D002736 9.1e-07 58.5 107 32.7
BcaB01g04236 Brassica carinata HOM05D002584 ORTHO05D002736 9.1e-07 58.5 97 39.2
AUR62019803 Chenopodium quinoa HOM05D002584 ORTHO05D002736 3.5e-06 56.6 117 32.5
Migut.A00681 Erythranthe guttata HOM05D002584 ORTHO05D002736 3.5e-06 56.6 94 34.0
vmacro13916 Vaccinium macrocarpon HOM05D002584 ORTHO05D002736 3.5e-06 56.6 69 42.0
Migut.E01018 Erythranthe guttata HOM05D002584 ORTHO05D002736 4.5e-06 56.2 93 37.6
Peaxi162Scf00074g01214 Petunia axillaris HOM05D002584 ORTHO05D002736 4.5e-06 56.2 98 34.7
Sopen08g030300 Solanum pennellii HOM05D002584 ORTHO05D002736 5.9e-06 55.8 114 29.8


User provided reference genes

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