Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc01g0004490 Simmondsia chinensis HOM05D005845 ORTHO05D007067 1.6e-55 219.2 110 100.0
GSVIVG01034129001 Vitis vinifera HOM05D005845 ORTHO05D007067 6.6e-33 144.1 96 75.0
TWI77G0787 Tripterygium wilfordii HOM05D005845 ORTHO05D007067 1.9e-32 142.5 113 66.4
TWI74G0153 Tripterygium wilfordii HOM05D005845 ORTHO05D007067 2.1e-31 139.0 80 83.8
Hma1.2p1_0936F.1_g238990 Hydrangea macrophylla HOM05D005845 ORTHO05D007067 3.6e-31 138.3 80 82.5
Psat3g137040 Pisum sativum HOM05D005845 ORTHO05D007067 3.6e-31 138.3 80 81.2
ClCG10G021330 Citrullus lanatus HOM05D005845 ORTHO05D007067 1.1e-30 136.7 80 83.8
Nn2g13425 Nelumbo nucifera HOM05D005845 ORTHO05D007067 1.1e-30 136.7 110 64.5
Haze_20829 Corylus avellana HOM05D005320 ORTHO05D007922 1.8e-30 136.0 80 81.2
CiPaw.10G147000 Carya illinoinensis HOM05D005845 ORTHO05D007067 2.3e-30 135.6 80 81.2
CSS0047206 Camellia sinensis var. sinensis HOM05D005845 ORTHO05D007067 3.1e-30 135.2 88 73.9
Duzib106G0947 Durio zibethinus HOM05D005845 ORTHO05D007067 3.1e-30 135.2 80 82.5
TAR633G1228 Trochodendron aralioides HOM05D005845 ORTHO05D007067 4.0e-30 134.8 76 82.9
ECA233G0482 Erigeron canadensis HOM05D005845 ORTHO05D007067 5.2e-30 134.4 96 68.8
Glyma.07G135300 Glycine max HOM05D005845 ORTHO05D007067 5.2e-30 134.4 81 79.0
MD12G1145500 Malus domestica HOM05D005845 ORTHO05D007067 5.2e-30 134.4 84 78.6
AUR62018118 Chenopodium quinoa HOM05D005845 ORTHO05D007067 6.8e-30 134.0 104 67.3
Lj3A964T57 Lonicera japonica HOM05D005845 ORTHO05D007067 6.8e-30 134.0 80 77.5
Gohir.A07G012100 Gossypium hirsutum HOM05D005845 ORTHO05D007067 8.9e-30 133.7 80 80.0
Gohir.D07G011900 Gossypium hirsutum HOM05D005845 ORTHO05D007067 8.9e-30 133.7 80 80.0
Gorai.001G012600 Gossypium raimondii HOM05D005845 ORTHO05D007067 8.9e-30 133.7 80 80.0
Sed0011119 Sechium edule HOM05D005845 ORTHO05D007067 8.9e-30 133.7 80 81.2
Prupe.6G259200 Prunus persica HOM05D005845 ORTHO05D007067 1.2e-29 133.3 82 78.0
Rhsim05G0194900 Rhododendron simsii HOM05D005845 ORTHO05D007067 1.2e-29 133.3 88 72.7
COL.COLO4_14759 Corchorus olitorius HOM05D005845 ORTHO05D007067 1.5e-29 132.9 75 85.3
DCAR_028759 Daucus carota HOM05D005845 ORTHO05D007067 1.5e-29 132.9 80 80.0
Atru.chr8.2014 Acer truncatum HOM05D005320 ORTHO05D007922 2.6e-29 132.1 78 80.8
arahy.Tifrunner.gnm1.ann1.CX8U58 Arachis hypogaea HOM05D005845 ORTHO05D007067 2.6e-29 132.1 85 76.5
Cc06_g02340 Coffea canephora HOM05D005845 ORTHO05D007067 2.6e-29 132.1 80 78.8
Gorai.009G405900 Gossypium raimondii HOM05D005845 ORTHO05D007067 2.6e-29 132.1 80 78.8
Potri.006G088200 Populus trichocarpa HOM05D005845 ORTHO05D007067 2.6e-29 132.1 113 61.9
TAR633G1058 Trochodendron aralioides HOM05D005845 ORTHO05D007067 2.6e-29 132.1 76 81.6
vmacro20178 Vaccinium macrocarpon HOM05D005845 ORTHO05D007067 2.6e-29 132.1 85 74.1
Eucgr.K03081 Eucalyptus grandis HOM05D005845 ORTHO05D007067 3.4e-29 131.7 112 62.5
MD04G1132800 Malus domestica HOM05D005845 ORTHO05D007067 3.4e-29 131.7 84 76.2
Medtr7g062970 Medicago truncatula HOM05D005845 ORTHO05D007067 3.4e-29 131.7 80 77.5
CsaV3_3G034730 Cucumis sativus L. HOM05D005845 ORTHO05D007067 4.4e-29 131.3 81 82.7
HanXRQChr02g0050481 Helianthus annuus HOM05D005845 ORTHO05D007067 5.8e-29 131.0 80 76.2
Ca_07339_v3 Cicer arietinum L. HOM05D005845 ORTHO05D007067 7.5e-29 130.6 80 78.8
Lsat_1_v5_gn_6_22520 Lactuca sativa HOM05D005845 ORTHO05D007067 7.5e-29 130.6 81 79.0
Hund14261 Selenicereus undatus HOM05D006267 ORTHO05D007490 7.5e-29 130.6 82 76.8
CANSAT35G1952 Cannabis sativa HOM05D005845 ORTHO05D007067 9.9e-29 130.2 75 82.7
Cpa.g.sc3458.2 Carica papaya HOM05D005845 ORTHO05D007067 9.9e-29 130.2 75 82.7
Nitab4.5_0003394g0030 Nicotiana tabacum HOM05D005845 ORTHO05D007067 9.9e-29 130.2 79 79.7
QL07p030115 Quercus lobata HOM05D005845 ORTHO05D007067 9.9e-29 130.2 79 75.9
QL07p030897 Quercus lobata HOM05D005845 ORTHO05D007067 9.9e-29 130.2 79 75.9
AUR62034449 Chenopodium quinoa HOM05D005845 ORTHO05D007067 1.3e-28 129.8 105 64.8
Nitab4.5_0000705g0030 Nicotiana tabacum HOM05D005845 ORTHO05D007067 1.3e-28 129.8 79 79.7
RcHm_v2.0_Chr3g0466071 Rosa chinensis HOM05D005845 ORTHO05D007067 1.3e-28 129.8 93 69.9
Eucgr.K03092 Eucalyptus grandis HOM05D005845 ORTHO05D007067 1.7e-28 129.4 82 75.6
Lalb_Chr03g0042411 Lupinus albus HOM05D005845 ORTHO05D007067 1.7e-28 129.4 82 78.0
PSO513G0176 Papaver somniferum HOM05D005845 ORTHO05D007067 1.7e-28 129.4 80 77.5
arahy.Tifrunner.gnm1.ann1.1Q4DHH Arachis hypogaea HOM05D005845 ORTHO05D007067 2.2e-28 129.0 80 78.8
arahy.Tifrunner.gnm1.ann1.D19TT3 Arachis hypogaea HOM05D005845 ORTHO05D007067 2.2e-28 129.0 80 78.8
Manes.09G092274 Manihot esculenta HOM05D005845 ORTHO05D007067 2.2e-28 129.0 80 76.2
Phvul.008G118000 Phaseolus vulgaris HOM05D005845 ORTHO05D007067 2.2e-28 129.0 79 78.5
SalBow1G4544 Salvia bowleyana HOM05D005845 ORTHO05D007067 2.2e-28 129.0 79 78.5
SalBow7G2664 Salvia bowleyana HOM05D005845 ORTHO05D007067 2.2e-28 129.0 79 78.5
BcaC05g29521 Brassica carinata HOM05D005845 ORTHO05D007067 2.9e-28 128.6 80 78.8
FvH4_6g13240 Fragaria vesca HOM05D005845 ORTHO05D007067 2.9e-28 128.6 93 67.7
FAN02G1947 Fragaria x ananassa HOM05D005845 ORTHO05D007067 2.9e-28 128.6 93 67.7
FAN14G4222 Fragaria x ananassa HOM05D005845 ORTHO05D007067 2.9e-28 128.6 93 67.7
VMungo1383G2075 Vigna mungo HOM05D005845 ORTHO05D007067 2.9e-28 128.6 79 78.5
Ciclev10013078m.g Citrus clementina HOM05D005845 ORTHO05D007067 3.7e-28 128.3 82 73.2
CARHR083690 Cardamine hirsuta HOM05D005845 ORTHO05D007067 4.9e-28 127.9 80 77.5
Gohir.D04G102600 Gossypium hirsutum HOM05D005845 ORTHO05D007067 4.9e-28 127.9 80 76.2
PGR004G0892 Punica granatum HOM05D005845 ORTHO05D007067 4.9e-28 127.9 79 74.7
PGSC0003DMG400008901 Solanum tuberosum HOM05D005845 ORTHO05D007067 4.9e-28 127.9 79 77.2
EL10Ac2g03022 Beta vulgaris HOM05D005845 ORTHO05D007067 6.4e-28 127.5 81 76.5
BcaC05g29660 Brassica carinata HOM05D005845 ORTHO05D007067 8.3e-28 127.1 80 77.5
C05p58690 Brassica napus HOM05D005845 ORTHO05D007067 8.3e-28 127.1 80 77.5
BolC5t34518H Brassica oleracea HOM05D005845 ORTHO05D007067 8.3e-28 127.1 80 77.5
Peaxi162Scf00527g00733 Petunia axillaris HOM05D005845 ORTHO05D007067 8.3e-28 127.1 79 78.5
Thecc.05G035600 Theobroma cacao HOM05D005845 ORTHO05D007067 8.3e-28 127.1 80 76.2
Zm00001eb299980 Zea mays HOM05D005845 ORTHO05D007067 8.3e-28 127.1 94 69.1
Gohir.A04G065200 Gossypium hirsutum HOM05D005845 ORTHO05D007067 1.1e-27 126.7 83 75.9
PSO339G6396 Papaver somniferum HOM05D005845 ORTHO05D007067 1.1e-27 126.7 80 76.2
Carub.0006s0096 Capsella rubella HOM05D005845 ORTHO05D007067 1.4e-27 126.3 85 72.9
THA.LOC104816255 Tarenaya hassleriana HOM05D005845 ORTHO05D007067 1.4e-27 126.3 88 73.9
Aqoxy1G00879 Aquilegia oxysepala HOM05D005845 ORTHO05D007067 1.9e-27 125.9 79 77.2
Solyc09g011010.3 Solanum lycopersicum HOM05D005845 ORTHO05D007067 1.9e-27 125.9 79 75.9
Sopen09g005730 Solanum pennellii HOM05D005845 ORTHO05D007067 1.9e-27 125.9 79 75.9
Migut.L01960 Erythranthe guttata HOM05D005845 ORTHO05D007067 2.4e-27 125.6 109 58.7
A03p00540 Brassica napus HOM05D005845 ORTHO05D007067 3.2e-27 125.2 85 71.8
A05p39650 Brassica napus HOM05D005845 ORTHO05D007067 3.2e-27 125.2 79 78.5
BraA03t09444Z Brassica rapa HOM05D005845 ORTHO05D007067 3.2e-27 125.2 85 71.8
BraA05t22747Z Brassica rapa HOM05D005845 ORTHO05D007067 3.2e-27 125.2 79 78.5
Sp6g40320 Schrenkiella parvula HOM05D005845 ORTHO05D007067 3.2e-27 125.2 80 75.0
CARHR211240 Cardamine hirsuta HOM05D005845 ORTHO05D007067 4.1e-27 124.8 85 71.8
Lj1g0012131 Lotus japonicus HOM05D005845 ORTHO05D007067 4.1e-27 124.8 82 78.0
MBI05_g35632_MAGBIO Magnolia biondii HOM05D005845 ORTHO05D007067 4.1e-27 124.8 80 75.0
Os05g0292800 Oryza sativa ssp. japonica HOM05D005845 ORTHO05D007067 7.1e-27 124.0 81 76.5
AL3G20470 Arabidopsis lyrata HOM05D005845 ORTHO05D007067 9.2e-27 123.6 80 76.2
arahy.Tifrunner.gnm1.ann1.1BNP0N Arachis hypogaea HOM05D005845 ORTHO05D007067 9.2e-27 123.6 82 75.6
ATR0559G337 Amborella trichopoda HOM05D005845 ORTHO05D007067 1.2e-26 123.2 73 82.2
BcaB01g06068 Brassica carinata HOM05D005845 ORTHO05D007067 2.7e-26 122.1 85 69.4
C03p00800 Brassica napus HOM05D005845 ORTHO05D007067 2.7e-26 122.1 85 69.4
BolC3t12643H Brassica oleracea HOM05D005845 ORTHO05D007067 2.7e-26 122.1 85 69.4
Sabra06G0067200 Salix brachista HOM05D000102 ORTHO05D004225 2.7e-26 122.1 106 61.3
Aa31LG3G1810 Aethionema arabicum HOM05D005845 ORTHO05D007067 3.5e-26 121.7 82 72.0
Thhalv10015070m.g Eutrema salsugineum HOM05D005845 ORTHO05D007067 3.5e-26 121.7 80 73.8
Sp3g07700 Schrenkiella parvula HOM05D005845 ORTHO05D007067 3.5e-26 121.7 80 73.8
SEGI_39626 Sequoiadendron giganteum HOM05D005845 ORTHO05D007067 4.6e-26 121.3 78 75.6
Carub.0003s0843 Capsella rubella HOM05D005845 ORTHO05D007067 6.0e-26 120.9 80 73.8
AL6G11350 Arabidopsis lyrata HOM05D005845 ORTHO05D007067 7.8e-26 120.6 80 73.8
AT5G02120 Arabidopsis thaliana HOM05D005845 ORTHO05D007067 7.8e-26 120.6 80 72.5
CAN.G597.2 Capsicum annuum HOM05D005845 ORTHO05D007067 1.0e-25 120.2 75 76.0
BcaB01g06213 Brassica carinata HOM05D005845 ORTHO05D007067 1.7e-25 119.4 85 69.4
Rhsim04G0158900 Rhododendron simsii HOM05D005845 ORTHO05D007067 1.7e-25 119.4 92 65.2
FAN05G4617 Fragaria x ananassa HOM05D005845 ORTHO05D007067 3.9e-25 118.2 93 64.5
Eucgr.G01508 Eucalyptus grandis HOM05D005845 ORTHO05D007067 3.3e-24 115.2 68 83.8
Os12g0480100 Oryza sativa ssp. japonica HOM05D005845 ORTHO05D007067 4.3e-24 114.8 86 67.4
Lalb_Chr01g0022631 Lupinus albus HOM05D005845 ORTHO05D007067 5.6e-24 114.4 80 71.2
MELO3C009241.2 Cucumis melo HOM05D005845 ORTHO05D007067 1.2e-23 113.2 112 58.0
CDE06G2558 Ceratophyllum demersum HOM05D000816 ORTHO05D009154 2.1e-23 112.5 73 71.2
Zm00001eb090340 Zea mays HOM05D005845 ORTHO05D007067 4.7e-23 111.3 85 69.4
Eucgr.K03089 Eucalyptus grandis HOM05D005845 ORTHO05D007067 1.5e-21 106.3 101 56.4
Eucgr.K03094 Eucalyptus grandis HOM05D005845 ORTHO05D007067 3.4e-21 105.1 68 76.5
Dinv35574 Davidia involucrata HOM05D005845 ORTHO05D007067 6.4e-20 100.9 72 68.1
Pp3c18_21050 Physcomitrium patens HOM05D005845 ORTHO05D007067 3.2e-19 98.6 73 64.4
Actinidia11275 Actinidia chinensis HOM05D005845 ORTHO05D007067 7.1e-19 97.4 66 66.7
HPP92_019240 Vanilla planifolia HOM05D005845 ORTHO05D007067 1.2e-18 96.7 105 53.3
Oeu023072.1 Olea europaea HOM05D005845 ORTHO05D007067 1.6e-18 96.3 59 76.3
Pp3c22_8010 Physcomitrium patens HOM05D005845 ORTHO05D007067 4.6e-18 94.7 72 63.9
AagrBONN_evm.TU.Sc2ySwM_344.1593 Anthoceros agrestis HOM05D005845 ORTHO05D007067 6.0e-18 94.4 75 60.0
Zm00001eb372120 Zea mays HOM05D005845 ORTHO05D007067 6.0e-18 94.4 79 60.8
TAR369G0629 Trochodendron aralioides HOM05D005845 ORTHO05D007067 3.9e-17 91.7 57 77.2
Mapoly0151s0005 Marchantia polymorpha HOM05D005845 ORTHO05D007067 1.1e-16 90.1 85 54.1
SEGI_14936 Sequoiadendron giganteum HOM05D005845 ORTHO05D007067 1.5e-16 89.7 57 75.4
Eucgr.G00292 Eucalyptus grandis HOM05D005845 ORTHO05D007067 5.6e-16 87.8 53 79.2
Glyma.18G185300 Glycine max HOM05D005845 ORTHO05D007067 4.7e-15 84.7 80 57.5
Eucgr.K03086 Eucalyptus grandis HOM05D005845 ORTHO05D007067 8.1e-15 84.0 57 68.4
CBR_g4596 Chara braunii HOM05D005845 ORTHO05D007067 3.1e-14 82.0 99 45.5
TPR.G22204 Trifolium pratense HOM05D000026 ORTHO05D007067 9.0e-14 80.5 94 52.1
TPR.G34843 Trifolium pratense HOM05D005845 ORTHO05D007067 3.4e-13 78.6 47 76.6
Rhsim04G0160800 Rhododendron simsii HOM05D005845 ORTHO05D007067 9.3e-11 70.5 37 91.9
Cre02.g109950 Chlamydomonas reinhardtii HOM05D005845 ORTHO05D007067 8.7e-09 63.9 89 39.3
MCO09G323 Micromonas commoda HOM05D005845 ORTHO05D007067 2.8e-07 58.9 78 39.7


User provided reference genes

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