Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc01g0004440 Simmondsia chinensis HOM05D004372 ORTHO05D004331 1.2e-32 142.5 69 100.0
Gohir.A05G094000 Gossypium hirsutum HOM05D004372 ORTHO05D004331 6.4e-10 67.0 52 61.5
Manes.07G117700 Manihot esculenta HOM05D004372 ORTHO05D004331 1.4e-09 65.9 54 55.6
HPP92_019243 Vanilla planifolia HOM05D004372 ORTHO05D004331 1.4e-09 65.9 62 50.0
Nn2g11160 Nelumbo nucifera HOM05D004372 ORTHO05D004331 2.4e-09 65.1 54 57.4
Haze_20817 Corylus avellana HOM05D004372 ORTHO05D004331 3.2e-09 64.7 55 54.5
Duzib150G1613 Durio zibethinus HOM05D004372 ORTHO05D004331 3.2e-09 64.7 52 57.7
Os03g0822400 Oryza sativa ssp. japonica HOM05D004372 ORTHO05D004331 3.2e-09 64.7 70 47.1
Cfa017356 Carpinus fangiana HOM05D004372 ORTHO05D004331 4.2e-09 64.3 55 54.5
Nn2g13398 Nelumbo nucifera HOM05D004372 ORTHO05D004331 7.1e-09 63.5 59 50.8
Haze_17088 Corylus avellana HOM05D004372 ORTHO05D004331 9.3e-09 63.2 54 57.4
CDE02G0964 Ceratophyllum demersum HOM05D000511 ORTHO05D000413 2.7e-08 61.6 60 50.0
MD04G1131100 Malus domestica HOM05D004372 ORTHO05D004331 2.7e-08 61.6 50 56.0
A10p33400 Brassica napus HOM05D004372 ORTHO05D004331 3.5e-08 61.2 58 50.0
BolC9t60164H Brassica oleracea HOM05D004372 ORTHO05D004331 3.5e-08 61.2 58 50.0
Manes.10G028900 Manihot esculenta HOM05D004372 ORTHO05D004331 3.5e-08 61.2 59 52.5
THA.LOC109116790 Tarenaya hassleriana HOM05D004372 ORTHO05D004331 4.6e-08 60.8 54 50.0
Carub.0006s0106 Capsella rubella HOM05D004372 ORTHO05D004331 7.9e-08 60.1 53 50.9
ClCG07G003460 Citrullus lanatus HOM05D004372 ORTHO05D004331 7.9e-08 60.1 47 57.4
Os01g0843700 Oryza sativa ssp. japonica HOM05D004372 ORTHO05D004331 7.9e-08 60.1 59 50.8
TAR623G0224 Trochodendron aralioides HOM05D004372 ORTHO05D004331 7.9e-08 60.1 43 67.4
Cfa001453 Carpinus fangiana HOM05D004372 ORTHO05D004331 1.0e-07 59.7 46 63.0
Zm00001eb148250 Zea mays HOM05D004372 ORTHO05D004331 1.0e-07 59.7 54 53.7
MELO3C003142.2 Cucumis melo HOM05D004372 ORTHO05D004331 1.3e-07 59.3 50 56.0
MD12G1144200 Malus domestica HOM05D004372 ORTHO05D004331 1.3e-07 59.3 50 58.0
Atru.chr12.419 Acer truncatum HOM05D004372 ORTHO05D004331 2.3e-07 58.5 61 47.5
BolC2t06039H Brassica oleracea HOM05D004372 ORTHO05D004331 2.3e-07 58.5 46 56.5
Hma1.2p1_1889F.1_g306650 Hydrangea macrophylla HOM05D004372 ORTHO05D004331 2.3e-07 58.5 53 58.5
Hma1.2p1_2197F.1_g316913 Hydrangea macrophylla HOM05D004372 ORTHO05D004331 2.3e-07 58.5 53 58.5
BcaNung06028 Brassica carinata HOM05D004372 ORTHO05D004331 3.0e-07 58.2 46 56.5
C02p00390 Brassica napus HOM05D004372 ORTHO05D004331 3.0e-07 58.2 46 56.5
ClCG10G021220 Citrullus lanatus HOM05D004372 ORTHO05D004331 3.0e-07 58.2 51 62.7
MBI05_g29695_MAGBIO Magnolia biondii HOM05D000093 ORTHO05D000814 3.0e-07 58.2 64 48.4
TAR636G3128 Trochodendron aralioides HOM05D004372 ORTHO05D004331 3.9e-07 57.8 62 54.8
C09p74310 Brassica napus HOM05D004372 ORTHO05D004331 5.1e-07 57.4 58 48.3
MELO3C023871.2 Cucumis melo HOM05D004372 ORTHO05D004331 6.7e-07 57.0 59 47.5
CsaV3_4G025140 Cucumis sativus L. HOM05D004372 ORTHO05D004331 6.7e-07 57.0 50 56.0
Glyma.02G248800 Glycine max HOM05D004372 ORTHO05D004331 8.7e-07 56.6 56 51.8
Hma1.2p1_0936F.1_g238880 Hydrangea macrophylla HOM05D004372 ORTHO05D004331 1.1e-06 56.2 50 54.0
TAR633G2336 Trochodendron aralioides HOM05D004372 ORTHO05D004331 1.1e-06 56.2 62 53.2
Hma1.2p1_1785F.1_g302220 Hydrangea macrophylla HOM05D004372 ORTHO05D004331 1.5e-06 55.8 59 50.8
Sed0017148 Sechium edule HOM05D004372 ORTHO05D004331 1.5e-06 55.8 47 53.2
Thecc.09G318100 Theobroma cacao HOM05D004372 ORTHO05D004331 1.5e-06 55.8 56 53.6
MBI14_g04662_MAGBIO Magnolia biondii HOM05D004372 ORTHO05D004331 1.9e-06 55.5 55 52.7
Phvul.008G231900 Phaseolus vulgaris HOM05D004372 ORTHO05D004331 2.5e-06 55.1 49 57.1
Rhsim04G0158600 Rhododendron simsii HOM05D004372 ORTHO05D004331 2.5e-06 55.1 48 56.2
CANSAT11G2039 Cannabis sativa HOM05D004372 ORTHO05D004331 3.3e-06 54.7 47 53.2
Manes.09G092400 Manihot esculenta HOM05D004372 ORTHO05D004331 3.3e-06 54.7 55 49.1
Prupe.6G257600 Prunus persica HOM05D004372 ORTHO05D004331 3.3e-06 54.7 50 52.0
BraA02t04711Z Brassica rapa HOM05D004372 ORTHO05D004331 4.3e-06 54.3 46 54.3
Cpa.g.sc81.114 Carica papaya HOM05D004372 ORTHO05D004331 4.3e-06 54.3 53 54.7
FAN02G2532 Fragaria x ananassa HOM05D004372 ORTHO05D004331 4.3e-06 54.3 51 52.9
FAN05G2794 Fragaria x ananassa HOM05D004372 ORTHO05D004331 4.3e-06 54.3 51 52.9
Medtr5g080040 Medicago truncatula HOM05D004372 ORTHO05D004331 4.3e-06 54.3 52 53.8
A10p06030 Brassica napus HOM05D004372 ORTHO05D004331 5.6e-06 53.9 62 48.4
BraA10t42865Z Brassica rapa HOM05D004372 ORTHO05D004331 5.6e-06 53.9 62 48.4
Gohir.D09G150300 Gossypium hirsutum HOM05D004372 ORTHO05D004331 5.6e-06 53.9 54 50.0
Gorai.006G171600 Gossypium raimondii HOM05D004372 ORTHO05D004331 5.6e-06 53.9 54 50.0
Cpa.g.c34680 Carica papaya HOM05D004372 ORTHO05D004331 7.4e-06 53.5 53 47.2
FAN09G4335 Fragaria x ananassa HOM05D004372 ORTHO05D004331 7.4e-06 53.5 51 52.9
Lsat_1_v5_gn_8_15240 Lactuca sativa HOM05D004372 ORTHO05D004331 9.6e-06 53.1 53 50.9


User provided reference genes

Program Settings