Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc01g0004350 Simmondsia chinensis HOM05D002515 ORTHO05D002722 0.0e+00 1162.1 598 100.0
EL10Ac5g11575 Beta vulgaris HOM05D002515 ORTHO05D002722 1.2e-59 235.3 490 40.0
AUR62041766 Chenopodium quinoa HOM05D002515 ORTHO05D002722 3.8e-50 203.8 393 41.5
Prupe.6G254700 Prunus persica HOM05D002515 ORTHO05D002722 5.2e-47 193.4 679 30.2
Ciclev10013810m.g Citrus clementina HOM05D002515 ORTHO05D002722 8.8e-47 192.6 587 29.3
Actinidia05311 Actinidia chinensis HOM05D002515 ORTHO05D002722 1.7e-45 188.3 565 30.1
TAR633G1102 Trochodendron aralioides HOM05D002515 ORTHO05D002722 2.8e-45 187.6 633 29.4
Actinidia13143 Actinidia chinensis HOM05D002515 ORTHO05D002722 1.2e-43 182.2 579 29.7
Thecc.05G040000 Theobroma cacao HOM05D002515 ORTHO05D002722 1.6e-43 181.8 676 29.6
CSS0028630 Camellia sinensis var. sinensis HOM05D002515 ORTHO05D002722 4.5e-43 180.3 586 30.4
Rhsim04G0157000 Rhododendron simsii HOM05D002515 ORTHO05D002722 2.5e-41 174.5 552 29.3
MD12G1141400 Malus domestica HOM05D002515 ORTHO05D002722 3.2e-41 174.1 612 28.4
Rhsim04G0156800 Rhododendron simsii HOM05D002515 ORTHO05D002722 3.2e-41 174.1 552 29.3
MD04G1128800 Malus domestica HOM05D002515 ORTHO05D002722 1.6e-40 171.8 645 28.8
CANSAT35G0014 Cannabis sativa HOM05D002515 ORTHO05D002722 1.0e-39 169.1 487 31.0
Oeu036148.1 Olea europaea HOM05D002515 ORTHO05D002722 3.7e-37 160.6 582 29.6
Cfa017383 Carpinus fangiana HOM05D002515 ORTHO05D002722 4.8e-37 160.2 638 28.1
Lj2A95G42 Lonicera japonica HOM05D002515 ORTHO05D002722 4.8e-37 160.2 529 30.1
FvH4_6g13720 Fragaria vesca HOM05D002515 ORTHO05D002722 9.1e-36 156.0 592 30.2
Atru.chr8.1972 Acer truncatum HOM05D002515 ORTHO05D002722 2.7e-35 154.5 553 26.9
Nitab4.5_0000216g0300 Nicotiana tabacum HOM05D002515 ORTHO05D002722 5.9e-35 153.3 529 31.4
PSO339G4477 Papaver somniferum HOM05D002515 ORTHO05D002722 5.9e-35 153.3 541 29.4
FAN09G4793 Fragaria x ananassa HOM05D002515 ORTHO05D002722 1.0e-34 152.5 578 29.8
Cpa.g.sc228.13 Carica papaya HOM05D003688 ORTHO05D004338 1.3e-34 152.1 535 29.7
Haze_20788 Corylus avellana HOM05D002515 ORTHO05D002722 1.7e-34 151.8 646 27.6
Nn2g10370 Nelumbo nucifera HOM05D002515 ORTHO05D002722 1.7e-34 151.8 690 26.7
FAN14G0333 Fragaria x ananassa HOM05D002515 ORTHO05D002722 3.8e-34 150.6 559 30.2
TWI74G1566 Tripterygium wilfordii HOM05D002515 ORTHO05D002722 5.0e-34 150.2 624 27.6
Nitab4.5_0000202g0110 Nicotiana tabacum HOM05D002515 ORTHO05D002722 6.5e-34 149.8 522 31.6
vmacro08655 Vaccinium macrocarpon HOM05D002515 ORTHO05D002722 6.5e-34 149.8 557 27.3
PGR004G0883 Punica granatum HOM05D002515 ORTHO05D002722 1.2e-32 145.6 490 28.4
FAN02G3265 Fragaria x ananassa HOM05D002515 ORTHO05D002722 2.7e-32 144.4 544 28.5
Sopen10g034200 Solanum pennellii HOM05D002515 ORTHO05D002722 4.7e-32 143.7 676 27.2
Solyc10g084750.1 Solanum lycopersicum HOM05D002515 ORTHO05D002722 8.0e-32 142.9 676 27.1
CiPaw.09G192400 Carya illinoinensis HOM05D002515 ORTHO05D002722 1.8e-31 141.7 637 28.4
GSVIVG01034175001 Vitis vinifera HOM05D002515 ORTHO05D002722 3.0e-31 141.0 495 29.3
RcHm_v2.0_Chr3g0466591 Rosa chinensis HOM05D002515 ORTHO05D002722 4.0e-31 140.6 434 31.6
SGA_v2.0_scaffold35G14232 Striga asiatica HOM05D002515 ORTHO05D002722 5.2e-31 140.2 487 27.3
Gohir.A11G326700 Gossypium hirsutum HOM05D002515 ORTHO05D002722 3.4e-30 137.5 499 27.3
Carub.0006s0118 Capsella rubella HOM05D002515 ORTHO05D002722 4.4e-30 137.1 609 26.6
TAR636G1413 Trochodendron aralioides HOM05D002515 ORTHO05D002722 5.7e-30 136.7 509 28.3
Potri.016G095500 Populus trichocarpa HOM05D002515 ORTHO05D002722 7.5e-30 136.3 681 24.4
Gohir.D11G345600 Gossypium hirsutum HOM05D002515 ORTHO05D002722 2.2e-29 134.8 620 26.6
Lj6g0009284 Lotus japonicus HOM05D002515 ORTHO05D002722 2.2e-29 134.8 517 27.9
Gorai.007G375900 Gossypium raimondii HOM05D002515 ORTHO05D002722 8.3e-29 132.9 620 26.6
MBI14_g20110_MAGBIO Magnolia biondii HOM05D002515 ORTHO05D002722 2.4e-28 131.3 576 26.2
Aqoxy4G02918 Aquilegia oxysepala HOM05D002515 ORTHO05D002722 5.4e-28 130.2 601 26.5
Aa31LG1G22410 Aethionema arabicum HOM05D002515 ORTHO05D002722 7.0e-28 129.8 531 26.4
Glyma.10G126600 Glycine max HOM05D002515 ORTHO05D002722 2.0e-27 128.3 555 26.1
Cc06_g02660 Coffea canephora HOM05D002515 ORTHO05D002722 3.5e-27 127.5 637 27.5
A03p00660 Brassica napus HOM05D002515 ORTHO05D002722 4.5e-27 127.1 491 27.9
PGSC0003DMG400011004 Solanum tuberosum HOM05D002515 ORTHO05D002722 4.5e-27 127.1 491 29.7
Lalb_Chr03g0036731 Lupinus albus HOM05D002515 ORTHO05D002722 5.9e-27 126.7 514 26.8
Sabra16G0101300 Salix brachista HOM05D002515 ORTHO05D002722 7.7e-27 126.3 575 25.2
AL6G11620 Arabidopsis lyrata HOM05D002515 ORTHO05D002722 1.3e-26 125.6 600 26.3
BraA03t09456Z Brassica rapa HOM05D005843 ORTHO05D007781 2.9e-26 124.4 496 29.0
Phvul.007G107700 Phaseolus vulgaris HOM05D002515 ORTHO05D002722 2.9e-26 124.4 518 26.8
CARHR211020 Cardamine hirsuta HOM05D002515 ORTHO05D002722 5.0e-26 123.6 589 25.1
Dinv35605 Davidia involucrata HOM05D002515 ORTHO05D002722 6.5e-26 123.2 329 34.0
C09p74180 Brassica napus HOM05D002515 ORTHO05D002722 1.5e-25 122.1 595 26.1
BolC9t60151H Brassica oleracea HOM05D002515 ORTHO05D002722 1.5e-25 122.1 595 26.1
Migut.L01943 Erythranthe guttata HOM05D002515 ORTHO05D002722 1.5e-25 122.1 461 29.3
FAN05G1797 Fragaria x ananassa HOM05D002515 ORTHO05D002722 1.5e-25 122.1 326 35.0
Sp6g40090 Schrenkiella parvula HOM05D002515 ORTHO05D002722 1.5e-25 122.1 610 24.6
arahy.Tifrunner.gnm1.ann1.T3EUR0 Arachis hypogaea HOM05D002515 ORTHO05D002722 2.5e-25 121.3 483 25.3
BcaB01g06160 Brassica carinata HOM05D005843 ORTHO05D007781 4.2e-25 120.6 438 29.9
Thhalv10012673m.g Eutrema salsugineum HOM05D002515 ORTHO05D002722 4.2e-25 120.6 533 26.8
Ah.12g062380 Amaranthus hybridus HOM05D002515 ORTHO05D002722 5.5e-25 120.2 461 30.2
COL.COLO4_14800 Corchorus olitorius HOM05D002515 ORTHO05D002722 9.5e-25 119.4 692 25.4
Peaxi162Scf00094g00141 Petunia axillaris HOM05D002515 ORTHO05D002722 9.5e-25 119.4 647 27.4
Manes.09G091300 Manihot esculenta HOM05D002515 ORTHO05D002722 3.6e-24 117.5 539 27.3
AT5G02390 Arabidopsis thaliana HOM05D002515 ORTHO05D002722 8.0e-24 116.3 605 25.6
BcaNung02129 Brassica carinata HOM05D005843 ORTHO05D007781 1.0e-23 115.9 594 26.1
Lalb_Chr01g0011091 Lupinus albus HOM05D002515 ORTHO05D002722 2.3e-23 114.8 534 26.2
QL07p048238 Quercus lobata HOM05D002515 ORTHO05D002722 2.3e-23 114.8 677 25.8
C03p00940 Brassica napus HOM05D005843 ORTHO05D007781 5.2e-23 113.6 436 29.6
BolC3t12656H Brassica oleracea HOM05D005843 ORTHO05D007781 5.2e-23 113.6 436 29.6
A10p33270 Brassica napus HOM05D002515 ORTHO05D002722 6.8e-23 113.2 592 25.0
BraA10t45358Z Brassica rapa HOM05D002515 ORTHO05D002722 1.2e-22 112.5 596 25.5
THA.LOC104816274 Tarenaya hassleriana HOM05D002515 ORTHO05D002722 1.5e-22 112.1 523 27.5
Peaxi162Scf00165g01219 Petunia axillaris HOM05D002515 ORTHO05D002722 2.0e-22 111.7 481 29.1
FAN16G3741 Fragaria x ananassa HOM05D002515 ORTHO05D002722 4.4e-22 110.5 483 25.9
arahy.Tifrunner.gnm1.ann1.6LJ86G Arachis hypogaea HOM05D002515 ORTHO05D002722 7.5e-22 109.8 484 25.4
BcaC06g31985 Brassica carinata HOM05D002515 ORTHO05D002722 9.8e-22 109.4 618 26.4
TPR.G31257 Trifolium pratense HOM05D002515 ORTHO05D002722 9.8e-22 109.4 518 24.5
DCAR_009231 Daucus carota HOM05D002515 ORTHO05D002722 1.3e-21 109.0 533 26.1
Dinv35606 Davidia involucrata HOM05D002515 ORTHO05D002722 1.7e-21 108.6 337 30.6
FAN25G0844 Fragaria x ananassa HOM05D002515 ORTHO05D002722 2.2e-21 108.2 478 25.3
Glyma.20G077800 Glycine max HOM05D002515 ORTHO05D002722 2.8e-21 107.8 449 27.8
Manes.04G034800 Manihot esculenta HOM05D002515 ORTHO05D002722 3.7e-21 107.5 519 26.2
QL01p032098 Quercus lobata HOM05D002515 ORTHO05D002722 4.9e-21 107.1 647 25.8
BcaNung05921 Brassica carinata HOM05D002515 ORTHO05D002722 1.8e-20 105.1 578 26.0
Duzib093G1384 Durio zibethinus HOM05D002515 ORTHO05D002722 1.6e-19 102.1 554 26.0
SalBow4G1848 Salvia bowleyana HOM05D002515 ORTHO05D002722 2.7e-19 101.3 469 28.4
Medtr1g047660 Medicago truncatula HOM05D002515 ORTHO05D002722 7.8e-19 99.8 536 23.9
Nitab4.5_0002018g0030 Nicotiana tabacum HOM05D002515 ORTHO05D002722 7.8e-19 99.8 624 27.7
CDE04G3739 Ceratophyllum demersum HOM05D002515 ORTHO05D002722 3.8e-18 97.4 544 24.1
Duzib150G0343 Durio zibethinus HOM05D002515 ORTHO05D002722 6.6e-18 96.7 503 25.4
FAN11G3380 Fragaria x ananassa HOM05D002515 ORTHO05D002722 6.6e-18 96.7 557 23.7
Manes.11G128400 Manihot esculenta HOM05D002515 ORTHO05D002722 1.1e-17 95.9 545 26.8
CiPaw.13G094800 Carya illinoinensis HOM05D002515 ORTHO05D002722 1.5e-17 95.5 510 24.7
Haze_24092 Corylus avellana HOM05D002515 ORTHO05D002722 1.9e-17 95.1 613 25.1
Cfa011498 Carpinus fangiana HOM05D002515 ORTHO05D006653 2.5e-17 94.7 531 24.7
Psat6g048200 Pisum sativum HOM05D002515 ORTHO05D002722 2.5e-17 94.7 398 27.9
Duzib128G0266 Durio zibethinus HOM05D002515 ORTHO05D002722 3.3e-17 94.4 633 24.8
MD11G1109700 Malus domestica HOM05D002515 ORTHO05D002722 4.3e-17 94.0 512 27.0
PGSC0003DMG400008910 Solanum tuberosum HOM05D002515 ORTHO05D002722 4.3e-17 94.0 389 29.0
Sopen09g005510 Solanum pennellii HOM05D002515 ORTHO05D002722 7.3e-17 93.2 373 29.5
Prupe.6G078200 Prunus persica HOM05D002515 ORTHO05D002722 1.2e-16 92.4 658 25.8
Nitab4.5_0006455g0020 Nicotiana tabacum HOM05D002515 ORTHO05D002722 2.6e-14 84.7 520 27.7
FAN21G0377 Fragaria x ananassa HOM05D002515 ORTHO05D006653 3.4e-14 84.3 478 23.6
Solyc09g010790.2 Solanum lycopersicum HOM05D002515 ORTHO05D002722 2.2e-13 81.6 511 26.6
CDE07G1359 Ceratophyllum demersum HOM05D002515 ORTHO05D002722 2.9e-13 81.3 512 22.9
GSVIVG01024972001 Vitis vinifera HOM05D002515 ORTHO05D002722 9.2e-12 76.3 607 23.9
RcHm_v2.0_Chr5g0064421 Rosa chinensis HOM05D002515 ORTHO05D002722 1.6e-11 75.5 263 28.5
FvH4_3g36010 Fragaria vesca HOM05D002515 ORTHO05D002722 2.0e-11 75.1 557 22.3
COL.COLO4_18507 Corchorus olitorius HOM05D002515 ORTHO05D002722 7.8e-11 73.2 490 23.7
ECA236G1034 Erigeron canadensis HOM05D002515 ORTHO05D005057 1.0e-10 72.8 433 24.9
Gorai.009G099300 Gossypium raimondii HOM05D002515 ORTHO05D002722 1.0e-10 72.8 494 24.3
Thecc.09G300700 Theobroma cacao HOM05D002515 ORTHO05D002722 1.7e-10 72.0 508 22.6
HPP92_019199 Vanilla planifolia HOM05D002515 ORTHO05D002722 3.9e-10 70.9 518 24.5
TAR362G1002 Trochodendron aralioides HOM05D002515 ORTHO05D002722 6.6e-10 70.1 91 44.0
Psat7g237000 Pisum sativum HOM05D002515 ORTHO05D002722 1.5e-09 68.9 269 30.1
Duzib168G0968 Durio zibethinus HOM05D002515 ORTHO05D002722 1.9e-09 68.6 500 22.6
Glyma.03G082500 Glycine max HOM05D002515 ORTHO05D002722 2.5e-09 68.2 291 27.8
Gohir.A05G095700 Gossypium hirsutum HOM05D002515 ORTHO05D002722 2.5e-09 68.2 481 23.3
Os12g0570500 Oryza sativa ssp. japonica HOM05D002515 ORTHO05D002722 2.5e-09 68.2 409 24.9
Ciclev10027797m.g Citrus clementina HOM05D002515 ORTHO05D002722 3.3e-09 67.8 432 23.8
Dinv16998 Davidia involucrata HOM05D002515 ORTHO05D002722 3.3e-09 67.8 639 22.8
Dinv43153 Davidia involucrata HOM05D002515 ORTHO05D002722 3.3e-09 67.8 639 22.8
MBI18_g06450_MAGBIO Magnolia biondii HOM05D002082 ORTHO05D002130 1.2e-08 65.9 518 21.2
Lalb_Chr07g0193901 Lupinus albus HOM05D002515 ORTHO05D002722 2.8e-08 64.7 456 24.6
CSS0030774 Camellia sinensis var. sinensis HOM05D002515 ORTHO05D002722 4.7e-08 63.9 471 25.1
Eucgr.K03137 Eucalyptus grandis HOM05D002515 ORTHO05D002722 4.7e-08 63.9 311 25.1
HPP92_000806 Vanilla planifolia HOM05D002515 ORTHO05D002722 4.7e-08 63.9 293 25.6
HPP92_019190 Vanilla planifolia HOM05D002515 ORTHO05D002722 4.7e-08 63.9 523 24.1
ATR0559G060 Amborella trichopoda HOM05D002515 ORTHO05D002722 6.2e-08 63.5 615 21.8
arahy.Tifrunner.gnm1.ann1.D53E9A Arachis hypogaea HOM05D002515 ORTHO05D002722 8.0e-08 63.2 408 25.7
Eucgr.J02056 Eucalyptus grandis HOM05D002515 ORTHO05D002722 8.0e-08 63.2 461 23.2
Cpa.g.sc81.155 Carica papaya HOM05D002515 ORTHO05D002722 1.1e-07 62.8 532 24.2
HPP92_014791 Vanilla planifolia HOM05D002082 ORTHO05D002130 1.1e-07 62.8 337 24.3
CSS0020060 Camellia sinensis var. sinensis HOM05D002515 ORTHO05D002722 1.4e-07 62.4 471 25.1
TAR636G1669 Trochodendron aralioides HOM05D002515 ORTHO05D002722 1.4e-07 62.4 208 29.8
arahy.Tifrunner.gnm1.ann1.WWI603 Arachis hypogaea HOM05D002515 ORTHO05D002722 1.8e-07 62.0 419 25.8
Ca_20526_v3 Cicer arietinum L. HOM05D002515 ORTHO05D002722 1.8e-07 62.0 465 23.4
Ca_30765_v3 Cicer arietinum L. HOM05D002515 ORTHO05D002722 1.8e-07 62.0 465 23.4
CANSAT54G1460 Cannabis sativa HOM05D002515 ORTHO05D002722 2.3e-07 61.6 547 22.9
Lj3g0026583 Lotus japonicus HOM05D002515 ORTHO05D002722 2.3e-07 61.6 322 24.8
Lsat_1_v5_gn_8_109380 Lactuca sativa HOM05D002515 ORTHO05D002722 4.0e-07 60.8 571 23.5
TAR362G0676 Trochodendron aralioides HOM05D002515 ORTHO05D002722 4.0e-07 60.8 266 26.7
FvH4_5g02600 Fragaria vesca HOM05D002082 ORTHO05D002130 6.8e-07 60.1 140 31.4
Zm00001eb029260 Zea mays HOM05D002515 ORTHO05D002722 8.9e-07 59.7 397 25.4
VMungo0331G1811 Vigna mungo HOM05D002515 ORTHO05D002722 1.2e-06 59.3 285 25.6
FAN08G0625 Fragaria x ananassa HOM05D002082 ORTHO05D002130 2.0e-06 58.5 139 31.7
FAN13G1469 Fragaria x ananassa HOM05D002082 ORTHO05D002130 2.0e-06 58.5 139 31.7
PSO782G2744 Papaver somniferum HOM05D002082 ORTHO05D002130 2.0e-06 58.5 294 24.5
FAN18G2062 Fragaria x ananassa HOM05D002082 ORTHO05D002130 2.6e-06 58.2 139 31.7
TWI79G0006 Tripterygium wilfordii HOM05D002515 ORTHO05D002722 2.6e-06 58.2 533 24.0
TAR629G0527 Trochodendron aralioides HOM05D002082 ORTHO05D002130 4.4e-06 57.4 330 25.8
Atru.chr3.3898 Acer truncatum HOM05D002515 ORTHO05D002722 5.8e-06 57.0 568 23.9
FAN04G2070 Fragaria x ananassa HOM05D002082 ORTHO05D002130 5.8e-06 57.0 139 30.9
THA.LOC104800658 Tarenaya hassleriana HOM05D002515 ORTHO05D002722 5.8e-06 57.0 260 23.8
Lj3g0010198 Lotus japonicus HOM05D002515 ORTHO05D002722 7.5e-06 56.6 645 23.1
MBI17_g24689_MAGBIO Magnolia biondii HOM05D002082 ORTHO05D002130 7.5e-06 56.6 426 22.5
PSO478G2816 Papaver somniferum HOM05D002082 ORTHO05D002130 9.8e-06 56.2 298 23.5


User provided reference genes

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