Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc01g0004200 Simmondsia chinensis HOM05D003527 ORTHO05D004099 4.8e-149 531.2 273 100.0
Actinidia26460 Actinidia chinensis HOM05D003527 ORTHO05D004099 1.2e-14 84.7 121 48.8
Atru.chr8.1961 Acer truncatum HOM05D003527 ORTHO05D004099 2.6e-14 83.6 99 55.6
GSVIVG01034186001 Vitis vinifera HOM05D003527 ORTHO05D004099 5.8e-14 82.4 91 54.9
Thecc.09G322900 Theobroma cacao HOM05D003527 ORTHO05D004099 7.6e-14 82.0 109 49.5
COL.COLO4_18499 Corchorus olitorius HOM05D003527 ORTHO05D004099 1.0e-13 81.6 92 52.2
Gohir.D11G345500 Gossypium hirsutum HOM05D003527 ORTHO05D004099 2.9e-13 80.1 109 47.7
Sabra16G0144000 Salix brachista HOM05D003527 ORTHO05D004099 2.9e-13 80.1 107 49.5
Dinv37181 Davidia involucrata HOM05D003527 ORTHO05D004099 3.8e-13 79.7 111 52.3
Aqoxy2G02103 Aquilegia oxysepala HOM05D003527 ORTHO05D004099 5.0e-13 79.3 90 53.3
Duzib168G1608 Durio zibethinus HOM05D003527 ORTHO05D004099 5.0e-13 79.3 109 49.5
Potri.001G238900 Populus trichocarpa HOM05D003527 ORTHO05D004099 5.0e-13 79.3 107 48.6
CiPaw.13G095400 Carya illinoinensis HOM05D003527 ORTHO05D004099 6.5e-13 79.0 101 48.5
Hma1.2p1_1513F.1_g288070 Hydrangea macrophylla HOM05D003527 ORTHO05D004099 6.5e-13 79.0 98 55.1
QL01p032299 Quercus lobata HOM05D003527 ORTHO05D004099 8.4e-13 78.6 111 48.6
Gohir.A11G326600 Gossypium hirsutum HOM05D003527 ORTHO05D004099 1.1e-12 78.2 109 46.8
Gohir.D05G096200 Gossypium hirsutum HOM05D003527 ORTHO05D004099 1.1e-12 78.2 91 50.5
Gorai.009G099700 Gossypium raimondii HOM05D003527 ORTHO05D004099 1.1e-12 78.2 91 50.5
Lj3g0018686 Lotus japonicus HOM05D003527 ORTHO05D004099 1.1e-12 78.2 99 56.6
Gohir.A05G096000 Gossypium hirsutum HOM05D003527 ORTHO05D004099 1.9e-12 77.4 91 49.5
SalBow3G4662 Salvia bowleyana HOM05D003527 ORTHO05D004099 2.5e-12 77.0 109 46.8
Actinidia23946 Actinidia chinensis HOM05D003527 ORTHO05D004099 3.2e-12 76.6 96 52.1
FAN25G2547 Fragaria x ananassa HOM05D003527 ORTHO05D004099 3.2e-12 76.6 92 52.2
MD11G1110500 Malus domestica HOM05D003527 ORTHO05D004099 3.2e-12 76.6 96 51.0
Manes.04G034300 Manihot esculenta HOM05D003527 ORTHO05D004099 3.2e-12 76.6 111 46.8
Potri.009G030100 Populus trichocarpa HOM05D003527 ORTHO05D004099 3.2e-12 76.6 107 46.7
MSTRG.19089 Avicennia marina HOM05D003527 ORTHO05D004099 4.2e-12 76.3 109 48.6
Lj2A96T67 Lonicera japonica HOM05D003527 ORTHO05D004099 4.2e-12 76.3 97 48.5
Potri.006G084400 Populus trichocarpa HOM05D003527 ORTHO05D004099 4.2e-12 76.3 115 44.3
CSS0027996 Camellia sinensis var. sinensis HOM05D003527 ORTHO05D004099 5.5e-12 75.9 90 51.1
Ciclev10012740m.g Citrus clementina HOM05D003527 ORTHO05D004099 5.5e-12 75.9 93 50.5
COL.COLO4_14818 Corchorus olitorius HOM05D003527 ORTHO05D004099 5.5e-12 75.9 93 51.6
Dinv12411 Davidia involucrata HOM05D003527 ORTHO05D004099 5.5e-12 75.9 90 50.0
Migut.J00336 Erythranthe guttata HOM05D003527 ORTHO05D004099 5.5e-12 75.9 107 47.7
MD03G1096000 Malus domestica HOM05D003527 ORTHO05D004099 5.5e-12 75.9 91 53.8
Medtr2g096780 Medicago truncatula HOM05D003527 ORTHO05D004099 5.5e-12 75.9 101 51.5
Prupe.6G079000 Prunus persica HOM05D003527 ORTHO05D004099 5.5e-12 75.9 90 51.1
Hund04968 Selenicereus undatus HOM05D003527 ORTHO05D004099 5.5e-12 75.9 110 50.0
FAN16G0579 Fragaria x ananassa HOM05D003527 ORTHO05D004099 7.1e-12 75.5 92 51.1
Sabra09G0021000 Salix brachista HOM05D003527 ORTHO05D004099 7.1e-12 75.5 107 45.8
Ah.08g219410 Amaranthus hybridus HOM05D003527 ORTHO05D004099 9.3e-12 75.1 115 48.7
CARHR210970 Cardamine hirsuta HOM05D003527 ORTHO05D004099 9.3e-12 75.1 91 53.8
Nn5g26928 Nelumbo nucifera HOM05D003527 ORTHO05D004099 9.3e-12 75.1 90 53.3
Haze_24084 Corylus avellana HOM05D003527 ORTHO05D004099 1.2e-11 74.7 111 47.7
Duzib093G1072 Durio zibethinus HOM05D003527 ORTHO05D004099 1.2e-11 74.7 103 50.5
Glyma.03G082900 Glycine max HOM05D003527 ORTHO05D004099 1.2e-11 74.7 109 46.8
Nn2g10383 Nelumbo nucifera HOM05D003527 ORTHO05D004099 1.2e-11 74.7 109 47.7
Oeu024354.1 Olea europaea HOM05D003527 ORTHO05D004099 1.2e-11 74.7 111 49.5
Thecc.05G040900 Theobroma cacao HOM05D003527 ORTHO05D004099 1.2e-11 74.7 93 53.8
TAR633G1470 Trochodendron aralioides HOM05D003527 ORTHO05D004099 1.2e-11 74.7 109 47.7
Aqoxy4G02910 Aquilegia oxysepala HOM05D003527 ORTHO05D004099 1.6e-11 74.3 107 45.8
Cpa.g.sc81.162 Carica papaya HOM05D003527 ORTHO05D004099 1.6e-11 74.3 98 48.0
EL10Ac7g16007 Beta vulgaris HOM05D003527 ORTHO05D004099 2.1e-11 73.9 115 47.8
FAN21G2526 Fragaria x ananassa HOM05D003527 ORTHO05D004099 2.1e-11 73.9 92 50.0
Manes.08G081800 Manihot esculenta HOM05D003527 ORTHO05D004099 2.1e-11 73.9 111 45.9
Manes.09G089700 Manihot esculenta HOM05D003527 ORTHO05D004099 2.1e-11 73.9 94 50.0
CiPaw.09G191600 Carya illinoinensis HOM05D003527 ORTHO05D004099 2.7e-11 73.6 92 52.2
AUR62001798 Chenopodium quinoa HOM05D003527 ORTHO05D004099 2.7e-11 73.6 115 47.8
AUR62009585 Chenopodium quinoa HOM05D003527 ORTHO05D004099 2.7e-11 73.6 115 47.8
Dinv16990 Davidia involucrata HOM05D003527 ORTHO05D004099 2.7e-11 73.6 111 44.1
Dinv42939 Davidia involucrata HOM05D003527 ORTHO05D004099 2.7e-11 73.6 111 44.1
Dinv43161 Davidia involucrata HOM05D003527 ORTHO05D004099 2.7e-11 73.6 111 44.1
Peaxi162Scf00165g01520 Petunia axillaris HOM05D003527 ORTHO05D004099 2.7e-11 73.6 99 47.5
RcHm_v2.0_Chr5g0064221 Rosa chinensis HOM05D003527 ORTHO05D004099 2.7e-11 73.6 90 51.1
Sabra06G0064100 Salix brachista HOM05D006626 ORTHO05D007352 2.7e-11 73.6 107 46.7
arahy.Tifrunner.gnm1.ann1.QWF1SC Arachis hypogaea HOM05D003527 ORTHO05D004099 3.5e-11 73.2 91 49.5
CSS0030599 Camellia sinensis var. sinensis HOM05D003527 ORTHO05D004099 3.5e-11 73.2 89 50.6
Haze_20770 Corylus avellana HOM05D003527 ORTHO05D004099 3.5e-11 73.2 91 51.6
Phvul.010G013400 Phaseolus vulgaris HOM05D003527 ORTHO05D004099 3.5e-11 73.2 100 51.0
QL07p048124 Quercus lobata HOM05D003527 ORTHO05D004099 3.5e-11 73.2 91 51.6
Rhsim13G0083400 Rhododendron simsii HOM05D003527 ORTHO05D004099 3.5e-11 73.2 103 47.6
MSTRG.5670 Avicennia marina HOM05D003527 ORTHO05D004099 4.6e-11 72.8 107 47.7
Ciclev10029234m.g Citrus clementina HOM05D003527 ORTHO05D004099 4.6e-11 72.8 92 51.1
Gorai.001G110200 Gossypium raimondii HOM05D003527 ORTHO05D004099 4.6e-11 72.8 111 46.8
Nitab4.5_0001800g0180 Nicotiana tabacum HOM05D003527 ORTHO05D004099 4.6e-11 72.8 99 51.5
GSVIVG01024982001 Vitis vinifera HOM05D003527 ORTHO05D004099 4.6e-11 72.8 90 51.1
Duzib128G0537 Durio zibethinus HOM05D003527 ORTHO05D004099 6.1e-11 72.4 102 51.0
Gohir.A07G097950 Gossypium hirsutum HOM05D003527 ORTHO05D004099 6.1e-11 72.4 109 47.7
Gohir.D07G102300 Gossypium hirsutum HOM05D003527 ORTHO05D004099 6.1e-11 72.4 109 47.7
Sc12g0001550 Simmondsia chinensis HOM05D003527 ORTHO05D004099 6.1e-11 72.4 110 47.3
TAR636G1653 Trochodendron aralioides HOM05D003527 ORTHO05D004099 6.1e-11 72.4 108 46.3
AT5G02440 Arabidopsis thaliana HOM05D003527 ORTHO05D004099 7.9e-11 72.0 101 52.5
ClCG02G020230 Citrullus lanatus HOM05D003527 ORTHO05D004099 7.9e-11 72.0 109 45.0
PGR004G1376 Punica granatum HOM05D003527 ORTHO05D004099 1.0e-10 71.6 112 48.2
Sed0026502 Sechium edule HOM05D003527 ORTHO05D004099 1.0e-10 71.6 109 47.7
TAR623G1457 Trochodendron aralioides HOM05D003527 ORTHO05D004099 1.0e-10 71.6 109 48.6
CDE02G3270 Ceratophyllum demersum HOM05D003527 ORTHO05D004099 1.3e-10 71.2 89 50.6
Thhalv10014850m.g Eutrema salsugineum HOM05D003527 ORTHO05D004099 1.3e-10 71.2 95 51.6
arahy.Tifrunner.gnm1.ann1.95G3UD Arachis hypogaea HOM05D003527 ORTHO05D004099 1.8e-10 70.9 90 48.9
C02p00460 Brassica napus HOM05D003527 ORTHO05D004099 1.8e-10 70.9 103 50.5
BolC2t06046H Brassica oleracea HOM05D003527 ORTHO05D004099 1.8e-10 70.9 103 50.5
FAN11G1093 Fragaria x ananassa HOM05D003527 ORTHO05D004099 1.8e-10 70.9 93 49.5
Duzib170G0558 Durio zibethinus HOM05D003527 ORTHO05D004099 2.3e-10 70.5 109 44.0
Eucgr.J02057 Eucalyptus grandis HOM05D003527 ORTHO05D004099 2.3e-10 70.5 111 47.7
MBI14_g37823_MAGBIO Magnolia biondii HOM05D003527 ORTHO05D004099 2.3e-10 70.5 89 53.9
PSO339G4025 Papaver somniferum HOM05D003527 ORTHO05D004099 2.3e-10 70.5 111 46.8
PSO384G3887 Papaver somniferum HOM05D003527 ORTHO05D004099 2.3e-10 70.5 111 46.8
AL6G11680 Arabidopsis lyrata HOM05D003527 ORTHO05D004099 3.0e-10 70.1 98 52.0
Ca_26083_v3 Cicer arietinum L. HOM05D003527 ORTHO05D004099 3.9e-10 69.7 111 48.6
ECA236G2982 Erigeron canadensis HOM05D003527 ORTHO05D004099 3.9e-10 69.7 97 51.5
PSO151G0026 Papaver somniferum HOM05D003527 ORTHO05D004099 3.9e-10 69.7 103 44.7
Sed0011659 Sechium edule HOM05D003527 ORTHO05D004099 3.9e-10 69.7 112 43.8
vmacro20143 Vaccinium macrocarpon HOM05D003527 ORTHO05D004099 3.9e-10 69.7 113 50.4
TWI31G0174 Tripterygium wilfordii HOM05D003527 ORTHO05D004099 5.1e-10 69.3 90 50.0
Eucgr.K03143 Eucalyptus grandis HOM05D003527 ORTHO05D004099 6.7e-10 68.9 94 47.9
TPR.G5587 Trifolium pratense HOM05D003527 ORTHO05D004099 6.7e-10 68.9 93 49.5
VMungo1383G0208 Vigna mungo HOM05D003527 ORTHO05D004099 6.7e-10 68.9 119 42.9
Medtr7g059410 Medicago truncatula HOM05D003527 ORTHO05D004099 8.7e-10 68.6 93 51.6
MELO3C025924.2 Cucumis melo HOM05D003527 ORTHO05D004099 1.1e-09 68.2 109 45.9
Carub.0006s0124 Capsella rubella HOM05D003527 ORTHO05D004099 1.5e-09 67.8 110 47.3
DCAR_005975 Daucus carota HOM05D003527 ORTHO05D004099 1.5e-09 67.8 98 50.0
Glyma.13G335402 Glycine max HOM05D003527 ORTHO05D004099 1.5e-09 67.8 111 44.1
Psat0s4138g0040 Pisum sativum HOM05D003527 ORTHO05D004099 1.5e-09 67.8 111 45.9
MBI05_g30238_MAGBIO Magnolia biondii HOM05D003527 ORTHO05D004099 1.9e-09 67.4 93 49.5
PSO339G2088 Papaver somniferum HOM05D003527 ORTHO05D004099 1.9e-09 67.4 103 43.7
Sc20g0003780 Simmondsia chinensis HOM05D003527 ORTHO05D389035 1.9e-09 67.4 42 78.6
Phvul.008G099800 Phaseolus vulgaris HOM05D003527 ORTHO05D004099 2.5e-09 67.0 108 45.4
CsaV3_3G034940 Cucumis sativus L. HOM05D003527 ORTHO05D004099 3.3e-09 66.6 121 43.8
CDE08G1604 Ceratophyllum demersum HOM05D003527 ORTHO05D004099 4.3e-09 66.2 110 42.7
Glyma.08G358400 Glycine max HOM05D003527 ORTHO05D004099 4.3e-09 66.2 108 46.3
Sopen09g005410 Solanum pennellii HOM05D003527 ORTHO05D004099 4.3e-09 66.2 98 44.9
TWI74G0830 Tripterygium wilfordii HOM05D003527 ORTHO05D004099 4.3e-09 66.2 96 47.9
FAN05G0377 Fragaria x ananassa HOM05D003527 ORTHO05D004099 7.4e-09 65.5 111 44.1
FAN09G3248 Fragaria x ananassa HOM05D003527 ORTHO05D004099 7.4e-09 65.5 111 44.1
Hund18916 Selenicereus undatus HOM05D003527 ORTHO05D004099 7.4e-09 65.5 115 47.8
FAN09G0639 Fragaria x ananassa HOM05D003527 ORTHO05D004099 9.7e-09 65.1 111 44.1
CSS0044295 Camellia sinensis var. sinensis HOM05D003527 ORTHO05D004099 1.3e-08 64.7 89 50.6
Lalb_Chr03g0035091 Lupinus albus HOM05D003527 ORTHO05D004099 2.2e-08 63.9 121 44.6
CANSAT35G0216 Cannabis sativa HOM05D003527 ORTHO05D004099 2.8e-08 63.5 111 46.8
Lsat_1_v5_gn_8_75920 Lactuca sativa HOM05D003527 ORTHO05D004099 2.8e-08 63.5 97 49.5
HanXRQChr05g0134511 Helianthus annuus HOM05D003527 ORTHO05D004099 3.7e-08 63.2 90 50.0
ECA247G3528 Erigeron canadensis HOM05D003527 ORTHO05D004099 4.8e-08 62.8 94 48.9
FAN02G4097 Fragaria x ananassa HOM05D003527 ORTHO05D004099 4.8e-08 62.8 111 43.2
RcHm_v2.0_Chr3g0466801 Rosa chinensis HOM05D003527 ORTHO05D004099 4.8e-08 62.8 111 44.1
VMungo1080G1739 Vigna mungo HOM05D003527 ORTHO05D004099 4.8e-08 62.8 108 47.2
FAN14G4675 Fragaria x ananassa HOM05D003527 ORTHO05D004099 6.3e-08 62.4 111 43.2
FvH4_6g13980 Fragaria vesca HOM05D003527 ORTHO05D004099 8.2e-08 62.0 111 43.2
LjContig00564g0015687 Lotus japonicus HOM05D003527 ORTHO05D004099 8.2e-08 62.0 111 42.3
Glyma.15G039000 Glycine max HOM05D003527 ORTHO05D004099 1.1e-07 61.6 91 47.3
ClCG04G008250 Citrullus lanatus HOM05D003527 ORTHO05D004099 1.4e-07 61.2 112 40.2
HanXRQChr08g0234711 Helianthus annuus HOM05D003527 ORTHO05D004099 1.4e-07 61.2 98 44.9
TWI79G0031 Tripterygium wilfordii HOM05D003527 ORTHO05D004099 1.4e-07 61.2 90 44.4
Cc06_g02720 Coffea canephora HOM05D003527 ORTHO05D004099 1.8e-07 60.8 114 41.2
DCAR_014846 Daucus carota HOM05D006626 ORTHO05D007352 3.1e-07 60.1 93 43.0
ATR0680G191 Amborella trichopoda HOM05D003527 ORTHO05D004099 6.9e-07 58.9 110 40.0
ATR0559G115 Amborella trichopoda HOM05D003527 ORTHO05D004099 2.0e-06 57.4 111 37.8
CiPaw.10G145200 Carya illinoinensis HOM05D003527 ORTHO05D004099 2.6e-06 57.0 109 42.2
THA.LOC104816278 Tarenaya hassleriana HOM05D003527 ORTHO05D004099 2.6e-06 57.0 99 47.5
PGR102G2755 Punica granatum HOM05D003527 ORTHO05D004099 3.4e-06 56.6 112 42.9
Prupe.6G253600 Prunus persica HOM05D003527 ORTHO05D004099 4.5e-06 56.2 93 40.9
Solyc11g066010.2 Solanum lycopersicum HOM05D003527 ORTHO05D004099 5.9e-06 55.8 91 44.0
Sopen11g025750 Solanum pennellii HOM05D003527 ORTHO05D004099 5.9e-06 55.8 91 44.0
PGSC0003DMG400000395 Solanum tuberosum HOM05D003527 ORTHO05D004099 5.9e-06 55.8 91 44.0
Ca_12948_v3 Cicer arietinum L. HOM05D003527 ORTHO05D004099 1.0e-05 55.1 78 47.4


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