Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc01g0003780 Simmondsia chinensis HOM05D005959 ORTHO05D007263 2.4e-137 492.3 265 100.0
Thecc.05G049500 Theobroma cacao HOM05D005959 ORTHO05D007263 1.9e-118 429.5 263 85.6
Hund12071 Selenicereus undatus HOM05D005959 ORTHO05D007263 5.5e-118 427.9 263 85.2
Duzib106G1538 Durio zibethinus HOM05D005959 ORTHO05D007263 7.2e-118 427.6 263 85.6
EL10Ac7g17275 Beta vulgaris HOM05D005959 ORTHO05D007263 6.1e-117 424.5 262 86.3
Gohir.D04G117100 Gossypium hirsutum HOM05D005959 ORTHO05D007263 8.0e-117 424.1 263 85.2
Duzib128G1635 Durio zibethinus HOM05D005959 ORTHO05D007263 1.8e-116 422.9 263 85.2
PGR004G1166 Punica granatum HOM05D005959 ORTHO05D007263 1.8e-116 422.9 263 85.6
Duzib093G0581 Durio zibethinus HOM05D005959 ORTHO05D007263 2.3e-116 422.5 263 85.2
Gorai.009G422000 Gossypium raimondii HOM05D005959 ORTHO05D007263 2.3e-116 422.5 263 84.8
Peaxi162Scf00009g00079 Petunia axillaris HOM05D005959 ORTHO05D007263 5.2e-116 421.4 263 83.3
Cc06_g03270 Coffea canephora HOM05D005959 ORTHO05D007263 1.3e-114 416.8 263 83.3
Nitab4.5_0000725g0200 Nicotiana tabacum HOM05D005959 ORTHO05D007263 1.3e-114 416.8 263 81.7
Manes.08G000700 Manihot esculenta HOM05D005959 ORTHO05D007263 2.2e-114 416.0 263 84.0
PGSC0003DMG400017610 Solanum tuberosum HOM05D005959 ORTHO05D007263 3.7e-114 415.2 263 82.5
Solyc10g085950.2 Solanum lycopersicum HOM05D005959 ORTHO05D007263 4.8e-114 414.8 263 81.7
Migut.L01643 Erythranthe guttata HOM05D005959 ORTHO05D007263 6.3e-114 414.5 262 82.8
MSTRG.26742 Avicennia marina HOM05D005959 ORTHO05D007263 1.1e-113 413.7 262 82.4
Eucgr.K03183 Eucalyptus grandis HOM05D005959 ORTHO05D007263 1.1e-113 413.7 260 84.2
QL07p045958 Quercus lobata HOM05D005959 ORTHO05D007263 1.1e-113 413.7 263 83.3
FAN09G4388 Fragaria x ananassa HOM05D005959 ORTHO05D007263 3.1e-113 412.1 263 81.7
RcHm_v2.0_Chr3g0468051 Rosa chinensis HOM05D005959 ORTHO05D007263 4.1e-113 411.8 263 81.7
Hma1.2p1_0111F.1_g053440 Hydrangea macrophylla HOM05D005959 ORTHO05D007263 5.3e-113 411.4 263 81.4
Ah.15g091970 Amaranthus hybridus HOM05D005959 ORTHO05D007263 7.0e-113 411.0 263 83.3
Cfa017467 Carpinus fangiana HOM05D005959 ORTHO05D007263 7.0e-113 411.0 263 82.1
FAN02G2849 Fragaria x ananassa HOM05D005959 ORTHO05D007263 9.1e-113 410.6 263 81.4
Oeu026074.1 Olea europaea HOM05D005959 ORTHO05D007263 9.1e-113 410.6 262 81.3
Potri.006G215700 Populus trichocarpa HOM05D005959 ORTHO05D007263 9.1e-113 410.6 259 83.0
unitig_578.g16043 Utricularia gibba HOM05D005959 ORTHO05D007263 9.1e-113 410.6 263 81.7
Prupe.6G245600 Prunus persica HOM05D005959 ORTHO05D007263 1.2e-112 410.2 263 82.5
FAN05G1034 Fragaria x ananassa HOM05D005959 ORTHO05D007263 1.6e-112 409.8 263 81.4
DCAR_020866 Daucus carota HOM05D005959 ORTHO05D007263 2.0e-112 409.5 263 81.0
Rhsim05G0184400 Rhododendron simsii HOM05D005959 ORTHO05D007263 2.0e-112 409.5 263 82.9
Glyma.10G047100 Glycine max HOM05D005959 ORTHO05D007263 3.5e-112 408.7 258 83.7
SGA_v2.0_scaffold94G28648 Striga asiatica HOM05D005959 ORTHO05D007263 3.5e-112 408.7 262 80.5
Glyma.03G175800 Glycine max HOM05D005959 ORTHO05D007263 4.5e-112 408.3 262 80.2
FAN14G3394 Fragaria x ananassa HOM05D005959 ORTHO05D007263 5.9e-112 407.9 263 80.6
Ciclev10012473m.g Citrus clementina HOM05D005959 ORTHO05D007263 7.7e-112 407.5 261 82.0
Thhalv10017068m.g Eutrema salsugineum HOM05D005959 ORTHO05D007263 7.7e-112 407.5 262 80.5
MD04G1110300 Malus domestica HOM05D005959 ORTHO05D007263 7.7e-112 407.5 263 81.7
Potri.016G082100 Populus trichocarpa HOM05D005959 ORTHO05D007263 1.3e-111 406.8 259 83.0
TWI74G1319 Tripterygium wilfordii HOM05D005959 ORTHO05D007263 1.3e-111 406.8 262 82.1
Phvul.001G172900 Phaseolus vulgaris HOM05D005959 ORTHO05D007263 3.8e-111 405.2 262 79.4
ATR0594G178 Amborella trichopoda HOM05D005959 ORTHO05D007263 5.0e-111 404.8 254 83.1
A04p28510 Brassica napus HOM05D005959 ORTHO05D007263 5.0e-111 404.8 259 80.7
Lj3A975G71 Lonicera japonica HOM05D005959 ORTHO05D007263 5.0e-111 404.8 263 79.8
C04p65830 Brassica napus HOM05D005959 ORTHO05D007263 6.5e-111 404.4 259 80.7
BraA04t18329Z Brassica rapa HOM05D005959 ORTHO05D007263 8.5e-111 404.1 259 80.3
MD12G1131100 Malus domestica HOM05D005959 ORTHO05D007263 1.5e-110 403.3 262 80.5
arahy.Tifrunner.gnm1.ann1.R87Y2D Arachis hypogaea HOM05D005959 ORTHO05D007263 2.5e-110 402.5 262 78.6
BcaC02g07517 Brassica carinata HOM05D005959 ORTHO05D007263 2.5e-110 402.5 259 80.3
BolC4t28086H Brassica oleracea HOM05D005959 ORTHO05D007263 2.5e-110 402.5 259 80.3
Lalb_Chr25g0289351 Lupinus albus HOM05D005959 ORTHO05D007263 2.5e-110 402.5 263 80.6
Haze_20691 Corylus avellana HOM05D005959 ORTHO05D007263 3.2e-110 402.1 276 77.9
Atru.chr8.2507 Acer truncatum HOM05D005959 ORTHO05D007263 7.2e-110 401.0 263 79.8
AL4G33710 Arabidopsis lyrata HOM05D005959 ORTHO05D007263 9.4e-110 400.6 262 78.6
Ca_08807_v3 Cicer arietinum L. HOM05D005959 ORTHO05D007263 2.1e-109 399.4 263 79.5
TAR623G1105 Trochodendron aralioides HOM05D005959 ORTHO05D007263 2.1e-109 399.4 263 80.6
CSS0020892 Camellia sinensis var. sinensis HOM05D005959 ORTHO05D007263 2.7e-109 399.1 263 78.7
Carub.0004s1924 Capsella rubella HOM05D005959 ORTHO05D007263 2.7e-109 399.1 262 79.0
CARHR132260 Cardamine hirsuta HOM05D005959 ORTHO05D007263 2.7e-109 399.1 262 79.0
FvH4_6g14820 Fragaria vesca HOM05D005959 ORTHO05D007263 3.6e-109 398.7 253 83.0
Lsat_1_v5_gn_6_33160 Lactuca sativa HOM05D005959 ORTHO05D007263 4.7e-109 398.3 261 77.8
TPR.G21452 Trifolium pratense HOM05D005959 ORTHO05D007263 4.7e-109 398.3 263 77.9
BcaC02g11852 Brassica carinata HOM05D005959 ORTHO05D007263 6.1e-109 397.9 262 79.0
Lj1g0020453 Lotus japonicus HOM05D005959 ORTHO05D007263 8.0e-109 397.5 259 79.2
Sopen10g035320 Solanum pennellii HOM05D005959 ORTHO05D007263 1.0e-108 397.1 251 83.7
Psat0s1952g0120 Pisum sativum HOM05D005959 ORTHO05D007263 1.8e-108 396.4 263 78.3
A05p08590 Brassica napus HOM05D005959 ORTHO05D007263 3.0e-108 395.6 262 78.6
Sp4g19650 Schrenkiella parvula HOM05D005959 ORTHO05D007263 3.0e-108 395.6 262 77.9
Aqoxy2G00899 Aquilegia oxysepala HOM05D005959 ORTHO05D007263 4.0e-108 395.2 257 80.5
AT2G37330 Arabidopsis thaliana HOM05D005959 ORTHO05D007263 4.0e-108 395.2 262 77.5
arahy.Tifrunner.gnm1.ann1.T45XFJ Arachis hypogaea HOM05D005959 ORTHO05D007263 4.0e-108 395.2 262 77.9
BraA05t19827Z Brassica rapa HOM05D005959 ORTHO05D007263 4.0e-108 395.2 262 78.2
THA.LOC104823437 Tarenaya hassleriana HOM05D005959 ORTHO05D007263 5.2e-108 394.8 261 79.7
C04p10680 Brassica napus HOM05D005959 ORTHO05D007263 8.8e-108 394.0 260 78.8
BolC4t22661H Brassica oleracea HOM05D005959 ORTHO05D007263 8.8e-108 394.0 260 78.8
MBI14_g34528_MAGBIO Magnolia biondii HOM05D005959 ORTHO05D007263 8.8e-108 394.0 254 83.5
Medtr7g100160 Medicago truncatula HOM05D005959 ORTHO05D007263 2.0e-107 392.9 263 77.9
HanXRQChr13g0399331 Helianthus annuus HOM05D005959 ORTHO05D007263 2.6e-107 392.5 261 77.4
MELO3C009294.2 Cucumis melo HOM05D005959 ORTHO05D007263 5.7e-107 391.3 265 77.7
CsaV3_3G035240 Cucumis sativus L. HOM05D005959 ORTHO05D007263 5.7e-107 391.3 265 77.4
Lj2A103T72 Lonicera japonica HOM05D005959 ORTHO05D007263 9.7e-107 390.6 265 77.4
CANSAT80G1914 Cannabis sativa HOM05D005959 ORTHO05D007263 2.2e-106 389.4 261 76.6
CAN.G687.19 Capsicum annuum HOM05D005959 ORTHO05D007263 2.2e-106 389.4 239 85.4
Aa31LG5G22650 Aethionema arabicum HOM05D005959 ORTHO05D007263 6.3e-106 387.9 259 78.8
CDE07G0433 Ceratophyllum demersum HOM05D005959 ORTHO05D007263 8.3e-106 387.5 272 75.7
ECA233G2168 Erigeron canadensis HOM05D005959 ORTHO05D007263 8.3e-106 387.5 250 81.6
Lalb_Chr20g0113031 Lupinus albus HOM05D005959 ORTHO05D007263 2.4e-105 386.0 262 75.6
BcaB02g09288 Brassica carinata HOM05D005959 ORTHO05D007263 4.1e-105 385.2 262 76.7
BcaB06g28984 Brassica carinata HOM05D005959 ORTHO05D007263 1.2e-104 383.6 251 80.1
PSO339G1263 Papaver somniferum HOM05D005959 ORTHO05D007263 1.2e-104 383.6 257 78.2
Sed0012545 Sechium edule HOM05D005959 ORTHO05D007263 2.0e-104 382.9 265 76.2
Sabra16G0089800 Salix brachista HOM05D005959 ORTHO05D007263 2.7e-104 382.5 259 79.9
PSO384G3658 Papaver somniferum HOM05D005959 ORTHO05D007263 7.7e-104 380.9 257 77.4
Aa31LG5G22670 Aethionema arabicum HOM05D005959 ORTHO05D007263 1.7e-103 379.8 251 80.1
Gohir.A04G077900 Gossypium hirsutum HOM05D005959 ORTHO05D007263 5.0e-103 378.3 284 74.6
vmacro20093 Vaccinium macrocarpon HOM05D005959 ORTHO05D007263 5.5e-102 374.8 285 74.4
HPP92_021201 Vanilla planifolia HOM05D005959 ORTHO05D007263 2.1e-101 372.9 259 76.1
SEGI_41460 Sequoiadendron giganteum HOM05D005959 ORTHO05D007263 6.1e-101 371.3 259 74.9
CiPaw.09G185300 Carya illinoinensis HOM05D005959 ORTHO05D007263 1.4e-100 370.2 223 87.9
Os05g0119000 Oryza sativa ssp. japonica HOM05D005959 ORTHO05D007263 1.2e-99 367.1 260 75.4
Cpa.g.sc114.24 Carica papaya HOM05D005959 ORTHO05D007263 7.5e-99 364.4 236 80.9
Eucgr.A01210 Eucalyptus grandis HOM05D005959 ORTHO05D007263 7.5e-99 364.4 258 74.4
Aa31LG5G22660 Aethionema arabicum HOM05D005959 ORTHO05D007263 9.8e-99 364.0 262 71.8
GSVIVG01025576001 Vitis vinifera HOM05D005959 ORTHO05D007263 9.8e-99 364.0 223 86.5
Hma1.2p1_0111F.1_g053390 Hydrangea macrophylla HOM05D005959 ORTHO05D007263 4.8e-98 361.7 262 70.2
AUR62041007 Chenopodium quinoa HOM05D005959 ORTHO05D007263 6.3e-98 361.3 263 76.0
Mapoly0099s0026 Marchantia polymorpha HOM05D005959 ORTHO05D007263 5.4e-97 358.2 260 73.1
Hma1.2p1_0111F.1_g053380 Hydrangea macrophylla HOM05D005959 ORTHO05D007263 2.5e-94 349.4 262 67.2
Pp3c20_6820 Physcomitrium patens HOM05D005959 ORTHO05D007263 3.3e-94 349.0 256 71.1
AagrBONN_evm.TU.Sc2ySwM_344.2577 Anthoceros agrestis HOM05D005959 ORTHO05D007263 1.2e-91 340.5 253 69.6
SMO271G0174 Selaginella moellendorffii HOM05D005959 ORTHO05D007263 7.8e-88 327.8 254 66.9
COL.COLO4_10311 Corchorus olitorius HOM05D005959 ORTHO05D007263 3.9e-87 325.5 263 70.0
SEGI_29713 Sequoiadendron giganteum HOM05D005959 ORTHO05D007263 5.8e-83 311.6 252 67.5
Dinv35677 Davidia involucrata HOM05D005959 ORTHO05D007263 2.9e-82 309.3 185 88.6
Actinidia05285 Actinidia chinensis HOM05D005959 ORTHO05D007263 7.1e-65 251.5 177 75.1
CBR_g49882 Chara braunii HOM05D000019 ORTHO05D000048 7.1e-65 251.5 258 51.6
Nitab4.5_0002073g0040 Nicotiana tabacum HOM05D005959 ORTHO05D007263 3.9e-63 245.7 263 55.9
Nn2g12822 Nelumbo nucifera HOM05D005959 ORTHO05D007263 4.3e-62 242.3 161 82.0
ClCG10G020740 Citrullus lanatus HOM05D005959 ORTHO05D007263 2.1e-61 240.0 154 82.5
Actinidia11237 Actinidia chinensis HOM05D005959 ORTHO05D007263 6.0e-56 221.9 152 80.3
SMO364G0860 Selaginella moellendorffii HOM05D005959 ORTHO05D007263 4.4e-51 205.7 241 44.8
CBR_g3295 Chara braunii HOM05D005959 ORTHO05D007263 9.3e-49 198.0 243 41.6
Actinidia19734 Actinidia chinensis HOM05D005959 ORTHO05D007263 4.0e-44 182.6 263 45.6
AagrBONN_evm.TU.Sc2ySwM_344.2052 Anthoceros agrestis HOM05D005959 ORTHO05D007263 4.6e-40 169.1 245 38.4
AagrBONN_evm.TU.Sc2ySwM_344.389 Anthoceros agrestis HOM05D005959 ORTHO05D007263 2.9e-34 149.8 240 35.8
CDE04G1398 Ceratophyllum demersum HOM05D004061 ORTHO05D004693 3.8e-34 149.4 98 76.5
Actinidia13264 Actinidia chinensis HOM05D005959 ORTHO05D007263 3.2e-33 146.4 96 83.3
MD08G1090300 Malus domestica HOM05D005959 ORTHO05D007263 3.1e-28 129.8 119 62.2
Nn5g28122 Nelumbo nucifera HOM05D005959 ORTHO05D007263 2.0e-27 127.1 75 86.7
Nn1g07598 Nelumbo nucifera HOM05D005959 ORTHO05D007263 2.5e-25 120.2 73 84.9
Cre16.g673000 Chlamydomonas reinhardtii HOM05D005959 ORTHO05D007263 1.2e-24 117.9 240 35.0
TAR629G2669 Trochodendron aralioides HOM05D002023 ORTHO05D002049 1.3e-18 97.8 98 56.1
Oeu004323.1 Olea europaea HOM05D005959 ORTHO05D007263 1.9e-09 67.4 42 81.0


User provided reference genes

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