Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc01g0003720 Simmondsia chinensis HOM05D004973 ORTHO05D006119 3.5e-114 415.2 254 100.0
Ciclev10012401m.g Citrus clementina HOM05D004973 ORTHO05D006119 6.6e-20 102.1 267 37.1
Dinv37236 Davidia involucrata HOM05D004973 ORTHO05D006119 9.6e-19 98.2 273 37.7
Thecc.05G050500 Theobroma cacao HOM05D004973 ORTHO05D006119 9.6e-19 98.2 263 38.0
GSVIVG01025573001 Vitis vinifera HOM05D004973 ORTHO05D009107 1.3e-18 97.8 214 41.1
QL07p045858 Quercus lobata HOM05D004973 ORTHO05D006119 1.6e-18 97.4 276 38.8
Hund12070 Selenicereus undatus HOM05D004973 ORTHO05D006119 2.8e-18 96.7 274 36.1
Gorai.006G177300 Gossypium raimondii HOM05D004973 ORTHO05D006119 8.1e-18 95.1 257 35.8
Manes.08G000800 Manihot esculenta HOM05D004973 ORTHO05D006119 8.1e-18 95.1 258 36.4
Gohir.A09G160200 Gossypium hirsutum HOM05D004973 ORTHO05D006119 1.8e-17 94.0 253 36.0
Nitab4.5_0000643g0210 Nicotiana tabacum HOM05D004973 ORTHO05D006119 2.4e-17 93.6 260 35.4
Nitab4.5_0000202g0430 Nicotiana tabacum HOM05D004973 ORTHO05D006119 3.1e-17 93.2 284 36.6
Hma1.2p1_0111F.1_g053560 Hydrangea macrophylla HOM05D004973 ORTHO05D006119 4.0e-17 92.8 269 38.3
HanXRQChr07g0195961 Helianthus annuus HOM05D004973 ORTHO05D006119 6.9e-17 92.0 278 34.2
CSS0008181 Camellia sinensis var. sinensis HOM05D004973 ORTHO05D006119 9.0e-17 91.7 257 33.9
Haze_20682 Corylus avellana HOM05D004973 ORTHO05D006119 2.6e-16 90.1 274 36.9
CSS0000366 Camellia sinensis var. sinensis HOM05D004973 ORTHO05D006119 3.4e-16 89.7 257 32.7
COL.COLO4_10304 Corchorus olitorius HOM05D004973 ORTHO05D006119 3.4e-16 89.7 257 36.6
CiPaw.09G185000 Carya illinoinensis HOM05D004973 ORTHO05D006119 4.5e-16 89.4 254 35.0
ECA238G2925 Erigeron canadensis HOM05D004973 ORTHO05D006119 4.5e-16 89.4 212 37.3
Sabra06G0166700 Salix brachista HOM05D004973 ORTHO05D006119 4.5e-16 89.4 269 34.6
Potri.006G216300 Populus trichocarpa HOM05D004973 ORTHO05D006119 1.3e-15 87.8 268 31.7
CSS0037973 Camellia sinensis var. sinensis HOM05D004973 ORTHO05D006119 1.7e-15 87.4 274 36.5
Cc06_g03330 Coffea canephora HOM05D004973 ORTHO05D006119 3.8e-15 86.3 302 33.8
PGSC0003DMG400011051 Solanum tuberosum HOM05D004973 ORTHO05D006119 4.9e-15 85.9 214 36.9
Peaxi162Scf00472g00079 Petunia axillaris HOM05D004973 ORTHO05D006119 6.4e-15 85.5 213 37.6
CiPaw.10G138900 Carya illinoinensis HOM05D004973 ORTHO05D006119 1.1e-14 84.7 225 39.6
Manes.09G071500 Manihot esculenta HOM05D004973 ORTHO05D006119 3.2e-14 83.2 260 33.8
DCAR_017742 Daucus carota HOM05D004973 ORTHO05D006119 7.1e-14 82.0 269 34.6
Gohir.D09G155800 Gossypium hirsutum HOM05D004973 ORTHO05D006119 1.6e-13 80.9 119 52.1
Eucgr.A01206 Eucalyptus grandis HOM05D004973 ORTHO05D006119 2.1e-13 80.5 258 34.5
Potri.016G082700 Populus trichocarpa HOM05D004973 ORTHO05D006119 2.1e-13 80.5 227 37.9
HanXRQChr14g0453421 Helianthus annuus HOM05D004973 ORTHO05D006119 6.0e-13 79.0 253 32.8
Prupe.6G245100 Prunus persica HOM05D004973 ORTHO05D009107 1.0e-12 78.2 264 31.4
Nitab4.5_0016310g0010 Nicotiana tabacum HOM05D004973 ORTHO05D006119 2.3e-12 77.0 282 35.8
THA.LOC104823441 Tarenaya hassleriana HOM05D004973 ORTHO05D006119 2.3e-12 77.0 124 50.0
Dinv35683 Davidia involucrata HOM05D004973 ORTHO05D006119 3.0e-12 76.6 274 33.2
Migut.L01647 Erythranthe guttata HOM05D004973 ORTHO05D006119 3.0e-12 76.6 272 33.1
Solyc10g084420.2 Solanum lycopersicum HOM05D004973 ORTHO05D006119 3.0e-12 76.6 209 38.8
Lj2A104T80 Lonicera japonica HOM05D004973 ORTHO05D006119 3.9e-12 76.3 107 53.3
BcaNung06611 Brassica carinata HOM05D004973 ORTHO05D006119 5.1e-12 75.9 168 40.5
C04p65800 Brassica napus HOM05D004973 ORTHO05D006119 5.1e-12 75.9 168 40.5
BolC4t28082H Brassica oleracea HOM05D004973 ORTHO05D006119 5.1e-12 75.9 168 40.5
Sopen10g033860 Solanum pennellii HOM05D004973 ORTHO05D006119 1.1e-11 74.7 210 35.7
Thhalv10017275m.g Eutrema salsugineum HOM05D004973 ORTHO05D006119 1.5e-11 74.3 173 40.5
MSTRG.19121 Avicennia marina HOM05D004973 ORTHO05D006119 1.9e-11 73.9 142 43.7
FAN09G0990 Fragaria x ananassa HOM05D004973 ORTHO05D006119 1.9e-11 73.9 272 33.1
FAN14G1622 Fragaria x ananassa HOM05D004973 ORTHO05D006119 3.3e-11 73.2 272 32.0
Gohir.A04G077600 Gossypium hirsutum HOM05D004973 ORTHO05D006119 4.3e-11 72.8 255 32.2
Medtr1g067220 Medicago truncatula HOM05D004973 ORTHO05D006119 4.3e-11 72.8 264 34.1
Carub.0004s1921 Capsella rubella HOM05D004973 ORTHO05D006119 5.6e-11 72.4 99 52.5
Gohir.D04G116800 Gossypium hirsutum HOM05D004973 ORTHO05D006119 5.6e-11 72.4 255 33.3
AL4G33680 Arabidopsis lyrata HOM05D004973 ORTHO05D006119 7.4e-11 72.0 139 43.2
BcaNung06612 Brassica carinata HOM05D004973 ORTHO05D006119 7.4e-11 72.0 103 52.4
A03p20600 Brassica napus HOM05D000861 ORTHO05D001799 7.4e-11 72.0 158 41.8
CDE04G2944 Ceratophyllum demersum HOM05D005673 ORTHO05D007081 7.4e-11 72.0 221 36.2
Gorai.009G421700 Gossypium raimondii HOM05D004973 ORTHO05D006119 9.6e-11 71.6 252 33.3
SalBow4G1465 Salvia bowleyana HOM05D004973 ORTHO05D006119 9.6e-11 71.6 141 41.8
TAR623G0749 Trochodendron aralioides HOM05D004973 ORTHO05D006119 9.6e-11 71.6 181 40.3
Peaxi162Scf00597g00824 Petunia axillaris HOM05D004973 ORTHO05D006119 1.6e-10 70.9 256 32.4
Atru.chr8.2512 Acer truncatum HOM05D004973 ORTHO05D006119 2.1e-10 70.5 84 58.3
Lj3A975T70 Lonicera japonica HOM05D004973 ORTHO05D006119 2.1e-10 70.5 268 33.6
RcHm_v2.0_Chr3g0468111 Rosa chinensis HOM05D004973 ORTHO05D006119 2.1e-10 70.5 86 59.3
Sp4g19620 Schrenkiella parvula HOM05D004973 ORTHO05D006119 2.1e-10 70.5 99 53.5
BraA03t11302Z Brassica rapa HOM05D000861 ORTHO05D001799 2.8e-10 70.1 73 61.6
Lsat_1_v5_gn_2_110141 Lactuca sativa HOM05D004973 ORTHO05D006119 2.8e-10 70.1 220 34.5
arahy.Tifrunner.gnm1.ann1.P2DQEA Arachis hypogaea HOM05D004973 ORTHO05D006119 3.6e-10 69.7 258 32.2
DCAR_014954 Daucus carota HOM05D000267 ORTHO05D000298 4.8e-10 69.3 81 59.3
FAN05G3543 Fragaria x ananassa HOM05D004973 ORTHO05D006119 4.8e-10 69.3 274 32.1
Nn2g10587 Nelumbo nucifera HOM05D004973 ORTHO05D006119 4.8e-10 69.3 153 41.2
EL10Ac7g17266 Beta vulgaris HOM05D004973 ORTHO05D006119 1.1e-09 68.2 262 34.0
C03p24200 Brassica napus HOM05D000861 ORTHO05D001799 1.1e-09 68.2 74 59.5
BolC3t14814H Brassica oleracea HOM05D004973 ORTHO05D006119 1.1e-09 68.2 74 59.5
THA.LOC104805339 Tarenaya hassleriana HOM05D004973 ORTHO05D006119 1.1e-09 68.2 166 41.0
AT2G37300 Arabidopsis thaliana HOM05D004973 ORTHO05D006119 1.4e-09 67.8 172 39.0
arahy.Tifrunner.gnm1.ann1.C8BSPY Arachis hypogaea HOM05D004973 ORTHO05D006119 1.4e-09 67.8 258 31.8
A04p28480 Brassica napus HOM05D004973 ORTHO05D006119 2.4e-09 67.0 167 38.9
TWI53G0396 Tripterygium wilfordii HOM05D004973 ORTHO05D006119 4.0e-09 66.2 103 49.5
MELO3C003079.2 Cucumis melo HOM05D004973 ORTHO05D006119 5.3e-09 65.9 208 34.1
FvH4_6g14910 Fragaria vesca HOM05D004973 ORTHO05D006119 6.9e-09 65.5 135 42.2
Glyma.10G047400 Glycine max HOM05D004973 ORTHO05D006119 6.9e-09 65.5 259 32.8
PGR004G2597 Punica granatum HOM05D004973 ORTHO05D006119 9.0e-09 65.1 104 49.0
BraA04t18326Z Brassica rapa HOM05D004973 ORTHO05D006119 1.5e-08 64.3 165 38.2
Oeu060067.1 Olea europaea HOM05D004973 ORTHO05D006119 2.0e-08 63.9 306 32.0
CANSAT80G1895 Cannabis sativa HOM05D004973 ORTHO05D006119 2.6e-08 63.5 258 32.6
vmacro20083 Vaccinium macrocarpon HOM05D004973 ORTHO05D006119 2.6e-08 63.5 198 34.8
Lj5g0023317 Lotus japonicus HOM05D004973 ORTHO05D006119 3.4e-08 63.2 215 35.8
Migut.J00395 Erythranthe guttata HOM05D004973 ORTHO05D006119 4.5e-08 62.8 128 39.1
Nn2g12943 Nelumbo nucifera HOM05D004973 ORTHO05D006119 4.5e-08 62.8 236 33.1
unitig_60.g25816 Utricularia gibba HOM05D004973 ORTHO05D006119 4.5e-08 62.8 75 60.0
VMungo1383G2298 Vigna mungo HOM05D004973 ORTHO05D006119 7.6e-08 62.0 71 54.9
FAN02G2240 Fragaria x ananassa HOM05D004973 ORTHO05D006119 9.9e-08 61.6 201 34.3
MD04G1111000 Malus domestica HOM05D004973 ORTHO05D006119 9.9e-08 61.6 127 43.3
MSTRG.10290 Avicennia marina HOM05D004973 ORTHO05D006119 1.3e-07 61.2 316 29.1
A05p08610 Brassica napus HOM05D004973 ORTHO05D006119 1.3e-07 61.2 70 57.1
SGA_v2.0_scaffold35G14182 Striga asiatica HOM05D004973 ORTHO05D006119 1.3e-07 61.2 225 32.9
BcaC02g07519 Brassica carinata HOM05D004973 ORTHO05D006119 2.9e-07 60.1 73 58.9
Glyma.19G176500 Glycine max HOM05D004973 ORTHO05D006119 2.9e-07 60.1 201 36.8
MD12G1129800 Malus domestica HOM05D004973 ORTHO05D006119 3.8e-07 59.7 253 31.6
C04p10700 Brassica napus HOM05D004973 ORTHO05D006119 4.9e-07 59.3 73 57.5
Lalb_Chr06g0171201 Lupinus albus HOM05D004973 ORTHO05D006119 4.9e-07 59.3 108 46.3
PSO384G3176 Papaver somniferum HOM05D004973 ORTHO05D006119 4.9e-07 59.3 128 39.8
Glyma.03G176000 Glycine max HOM05D004973 ORTHO05D006119 6.4e-07 58.9 200 36.5
Aqoxy4G03126 Aquilegia oxysepala HOM05D004973 ORTHO05D006119 1.1e-06 58.2 204 30.4
VMungo0720G0246 Vigna mungo HOM05D004973 ORTHO05D006119 1.1e-06 58.2 280 30.0
ClCG04G008700 Citrullus lanatus HOM05D004973 ORTHO05D006119 1.4e-06 57.8 207 32.4
CsaV3_4G024460 Cucumis sativus L. HOM05D004973 ORTHO05D006119 1.4e-06 57.8 224 32.1
Oeu029113.1 Olea europaea HOM05D004973 ORTHO05D006119 1.4e-06 57.8 208 32.2
TPR.G35656 Trifolium pratense HOM05D004973 ORTHO05D006119 1.4e-06 57.8 155 35.5
arahy.Tifrunner.gnm1.ann1.X85SHR Arachis hypogaea HOM05D004973 ORTHO05D006119 1.9e-06 57.4 81 50.6
arahy.Tifrunner.gnm1.ann1.4HMS3J Arachis hypogaea HOM05D004973 ORTHO05D006119 5.5e-06 55.8 81 49.4
MSTRG.26739 Avicennia marina HOM05D004973 ORTHO05D006119 9.3e-06 55.1 311 28.0


User provided reference genes

Program Settings