Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc01g0003550 Simmondsia chinensis HOM05D006343 ORTHO05D005694 1.9e-124 449.1 221 100.0
Sc01g0003560 Simmondsia chinensis HOM05D006343 ORTHO05D005694 4.0e-45 185.7 182 60.4
Hma1.2p1_0702F.1_g206150 Hydrangea macrophylla HOM05D006343 ORTHO05D005694 4.1e-18 95.9 276 33.3
Dinv43841 Davidia involucrata HOM05D006343 ORTHO05D005694 2.1e-17 93.6 260 33.5
Rhsim01G0164400 Rhododendron simsii HOM05D006343 ORTHO05D005694 2.1e-17 93.6 287 32.8
Rhsim01G0164000 Rhododendron simsii HOM05D006343 ORTHO05D005694 4.6e-17 92.4 296 33.1
Actinidia20887 Actinidia chinensis HOM05D006343 ORTHO05D005694 4.3e-15 85.9 273 32.6
Atru.chr5.528 Acer truncatum HOM05D006343 ORTHO05D005694 3.6e-14 82.8 284 30.6
Potri.014G087500 Populus trichocarpa HOM05D006343 ORTHO05D005694 4.7e-14 82.4 308 28.9
vmacro20913 Vaccinium macrocarpon HOM05D006343 ORTHO05D005694 4.7e-14 82.4 296 31.1
Ciclev10021525m.g Citrus clementina HOM05D006343 ORTHO05D005694 8.1e-14 81.6 292 29.8
CSS0004449 Camellia sinensis var. sinensis HOM05D006343 ORTHO05D005694 1.1e-13 81.3 274 31.8
vmacro20912 Vaccinium macrocarpon HOM05D006343 ORTHO05D005694 3.1e-13 79.7 293 30.7
DCAR_015699 Daucus carota HOM05D006343 ORTHO05D005694 4.0e-13 79.3 247 31.6
DCAR_015701 Daucus carota HOM05D006343 ORTHO05D005694 6.8e-13 78.6 251 32.3
Sabra14G0063500 Salix brachista HOM05D006343 ORTHO05D005694 6.8e-13 78.6 308 28.6
Oeu055797.1 Olea europaea HOM05D006343 ORTHO05D005694 1.2e-12 77.8 280 31.1
Sabra02G0128600 Salix brachista HOM05D006343 ORTHO05D005694 5.8e-12 75.5 301 29.6
Glyma.07G068200 Glycine max HOM05D006343 ORTHO05D005694 9.9e-12 74.7 298 31.5
Manes.01G254700 Manihot esculenta HOM05D006343 ORTHO05D005694 1.3e-11 74.3 309 28.5
MSTRG.18339 Avicennia marina HOM05D006343 ORTHO05D005694 1.7e-11 73.9 263 30.4
Cpa.g.sc11.35 Carica papaya HOM05D006343 ORTHO05D005694 3.8e-11 72.8 290 31.4
CiPaw.02G033200 Carya illinoinensis HOM05D006343 ORTHO05D005694 3.8e-11 72.8 302 30.5
Dinv32502 Davidia involucrata HOM05D006343 ORTHO05D005694 1.1e-10 71.2 209 34.9
GSVIVG01026998001 Vitis vinifera HOM05D006343 ORTHO05D005694 1.1e-10 71.2 298 28.9
SalBow6G3791 Salvia bowleyana HOM05D006343 ORTHO05D005694 1.4e-10 70.9 272 31.2
Duzib138G0695 Durio zibethinus HOM05D006343 ORTHO05D005694 1.9e-10 70.5 281 30.6
Gorai.007G101600 Gossypium raimondii HOM05D006343 ORTHO05D005694 1.9e-10 70.5 266 30.5
Rhsim06G0236200 Rhododendron simsii HOM05D006343 ORTHO05D005694 1.9e-10 70.5 269 31.2
Prupe.2G173800 Prunus persica HOM05D006343 ORTHO05D005694 3.2e-10 69.7 295 30.5
Cc02_g38320 Coffea canephora HOM05D006343 ORTHO05D005694 5.4e-10 68.9 287 28.2
unitig_22.g5289 Utricularia gibba HOM05D006343 ORTHO05D005694 5.4e-10 68.9 250 32.4
THA.LOC104825850 Tarenaya hassleriana HOM05D012121 ORTHO05D005694 7.1e-10 68.6 308 28.9
Nitab4.5_0001040g0020 Nicotiana tabacum HOM05D006343 ORTHO05D005694 9.2e-10 68.2 311 28.9
TAR629G3314 Trochodendron aralioides HOM05D006343 ORTHO05D005694 1.2e-09 67.8 288 28.5
Potri.002G161700 Populus trichocarpa HOM05D006343 ORTHO05D005694 2.1e-09 67.0 307 28.0
TWI23G0998 Tripterygium wilfordii HOM05D006343 ORTHO05D005694 2.7e-09 66.6 271 30.3
MSTRG.12522 Avicennia marina HOM05D006343 ORTHO05D005694 3.5e-09 66.2 279 28.7
Manes.05G031900 Manihot esculenta HOM05D006343 ORTHO05D005694 3.5e-09 66.2 303 27.7
Oeu035731.1 Olea europaea HOM05D006343 ORTHO05D005694 4.6e-09 65.9 275 28.0
CsaV3_6G000720 Cucumis sativus L. HOM05D006343 ORTHO05D005694 7.8e-09 65.1 291 28.2
Medtr8g028845 Medicago truncatula HOM05D006343 ORTHO05D005694 7.8e-09 65.1 214 31.8
Sed0018743 Sechium edule HOM05D006343 ORTHO05D005694 3.0e-08 63.2 269 27.9
Lsat_1_v5_gn_7_4100 Lactuca sativa HOM05D006343 ORTHO05D005694 3.9e-08 62.8 291 29.2
Gohir.D11G095300 Gossypium hirsutum HOM05D006343 ORTHO05D005694 6.6e-08 62.0 282 28.7
COL.COLO4_12739 Corchorus olitorius HOM05D006343 ORTHO05D005694 1.1e-07 61.2 284 30.6
RcHm_v2.0_Chr1g0357021 Rosa chinensis HOM05D006343 ORTHO05D005694 1.1e-07 61.2 299 28.1
Thhalv10028840m.g Eutrema salsugineum HOM05D012121 ORTHO05D005694 1.9e-07 60.5 314 28.7
FAN06G4353 Fragaria x ananassa HOM05D006343 ORTHO05D005694 2.5e-07 60.1 293 27.6
Nitab4.5_0001655g0110 Nicotiana tabacum HOM05D006343 ORTHO05D005694 3.3e-07 59.7 300 28.3
Oeu035725.1 Olea europaea HOM05D003054 ORTHO05D003376 3.3e-07 59.7 247 25.9
TWI14G1134 Tripterygium wilfordii HOM05D006343 ORTHO05D005694 5.6e-07 58.9 171 32.2
FAN10G3829 Fragaria x ananassa HOM05D006343 ORTHO05D005694 7.3e-07 58.5 290 26.9
CARHR248400 Cardamine hirsuta HOM05D012121 ORTHO05D005694 9.6e-07 58.2 318 28.6
CiPaw.01G064000 Carya illinoinensis HOM05D006343 ORTHO05D005694 1.2e-06 57.8 214 29.9
FAN10G0914 Fragaria x ananassa HOM05D006343 ORTHO05D005694 1.2e-06 57.8 290 26.6
SGA_v2.0_scaffold1G00635 Striga asiatica HOM05D006343 ORTHO05D005694 1.2e-06 57.8 138 33.3
Glyma.16G034200 Glycine max HOM05D006343 ORTHO05D005694 1.6e-06 57.4 310 26.5
FvH4_7g14870 Fragaria vesca HOM05D006343 ORTHO05D005694 2.1e-06 57.0 292 27.4
Nitab4.5_0002749g0010 Nicotiana tabacum HOM05D006343 ORTHO05D005694 2.8e-06 56.6 297 26.9
Oeu035719.1 Olea europaea HOM05D003054 ORTHO05D003376 2.8e-06 56.6 257 26.5
Actinidia10044 Actinidia chinensis HOM05D006343 ORTHO05D005694 3.6e-06 56.2 119 38.7
Oeu035722.1 Olea europaea HOM05D006343 ORTHO05D005694 3.6e-06 56.2 276 27.2
FAN06G0140 Fragaria x ananassa HOM05D006343 ORTHO05D005694 6.2e-06 55.5 291 27.5
SGA_v2.0_scaffold138G35202 Striga asiatica HOM05D004007 ORTHO05D005127 6.2e-06 55.5 224 28.1


User provided reference genes

Program Settings